View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_17 (Length: 311)
Name: NF13244_low_17
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 33423863 - 33424152
Alignment:
| Q |
8 |
cgaagaatatgattgtggatctcaattgagtcgctttctcttgggtcttatacaaca---tggattaagttgaactaagaagcaagcaaacattttgtat |
104 |
Q |
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| T |
33423863 |
cgaacaatatgattgtggatctcaattgagtcgctttctcttgggtcttatacaacaatatggattaagttgaactaagaagcaagcaaacattttgtat |
33423962 |
T |
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| Q |
105 |
aataaattattaatgaaagttcgagttacaatctgatttgaaagaactcatgcacaaaccaaaacataacaggatataaaattgaggaccaaattacaat |
204 |
Q |
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| T |
33423963 |
aataaattattaatgaaagttagagttacaatctgatttgaaagaactcatgcacaaaccaaaacataacaggatataaaattgaggaccaaattacaat |
33424062 |
T |
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| Q |
205 |
gacattaacataaataaccatataattcataatttaaaaaattcaaacaaatatggcaatgtatcttgccaaaagattaacacaaatact |
294 |
Q |
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| T |
33424063 |
gacattaacataaataaccatataattcataattcaaaaaattcaaataaatatggcaatgtatcttgccaaaagattaacacaaatact |
33424152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 60 - 294
Target Start/End: Original strand, 33410019 - 33410250
Alignment:
| Q |
60 |
caacatggattaagttgaactaagaagcaagcaaacattttgtataataaattattaatgaaagttcgagttacaatctgatttgaaagaa-ctcatgca |
158 |
Q |
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| T |
33410019 |
caacatggataaa-ttgaaataagaagtaagctaacacttttaataacaaattcttaatgaatgggagagttacaatctgatttgaaggaaactcgagaa |
33410117 |
T |
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| Q |
159 |
caaaccaaaacataacaggatataaaattgaggaccaaattacaatgac----attaacataaataaccatataattcataatttaaaaaattcaaacaa |
254 |
Q |
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| T |
33410118 |
caaaccaaaacataacaagatataaaattgaggatcaaattacaatgactttaattaacataaataatcatataattc-------aaaaaattcaaacaa |
33410210 |
T |
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| Q |
255 |
atatggcaatgtatcttgccaaaagattaacacaaatact |
294 |
Q |
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| T |
33410211 |
atatagcaatatatattgccaaaagattaacacaaatact |
33410250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 33415966 - 33416095
Alignment:
| Q |
164 |
caaaacataacaggatataaaattgaggaccaaattacaatgacattaacataaataaccatata--attcat-aatttaaaaaattcaaacaaatatgg |
260 |
Q |
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| T |
33415966 |
caaagcataacaagatataaaactgtggatctagttacaatatcattaacataaagaatcatatataattcattaattcaaaaaattcaaacaaatatag |
33416065 |
T |
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| Q |
261 |
caatgtatcttgccaaaagattaacacaaa |
290 |
Q |
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| T |
33416066 |
caatatatattgccaagaggttaacacaaa |
33416095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 33415854 - 33415913
Alignment:
| Q |
40 |
gctttctcttgggtcttatacaacatggattaagttgaactaagaagcaagcaaacatttt |
100 |
Q |
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| T |
33415854 |
gctttctcttgggtcttttgca-catggataaagttgaactaagaagtaaggaaacatttt |
33415913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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