View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_19 (Length: 283)
Name: NF13244_low_19
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 8946659 - 8946928
Alignment:
| Q |
1 |
tggacctaatgaaaccgaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattttgt |
100 |
Q |
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| T |
8946659 |
tggacctaatgaaatcgaaagaacatcaacaccgtccgatattgcagcatcaattgcagccattatatcagatgaaattgcaattggatcttcattttgt |
8946758 |
T |
|
| Q |
101 |
ccccacacaatcttgtacatagacactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttc |
200 |
Q |
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| T |
8946759 |
ccccacacaatcttgtacatagacactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttc |
8946858 |
T |
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| Q |
201 |
cggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
270 |
Q |
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| T |
8946859 |
cggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
8946928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 8973814 - 8973588
Alignment:
| Q |
17 |
gaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattttgtccccacacaatcttgt |
116 |
Q |
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| T |
8973814 |
gaaagaacatcaacaccgtccgatattgaggcatcaactgcggctattatatcagatgacactgca------tgtccatctttgccccacgcagtcttgt |
8973721 |
T |
|
| Q |
117 |
acatagacactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttga |
216 |
Q |
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| T |
8973720 |
acatagctactctagacaatgtagctattcctcttgctgttccgtttgcataaccaaagaatgatgcaccatcaacttgattcccagctgctgttgttga |
8973621 |
T |
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| Q |
217 |
agtgtgggttccatgaccatttgtgtcacgtgt |
249 |
Q |
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| T |
8973620 |
agtgtgtgtcccatgaccatttgtgtcacgtgt |
8973588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 8962415 - 8962166
Alignment:
| Q |
17 |
gaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattttgtcccca--cacaat--c |
112 |
Q |
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| T |
8962415 |
gaaagaacatccacaccgtctgatattgcggcatcaattgcagctattgtgtcagatgaaagtgc-------ttttccatttgttcccggccacaatgcc |
8962323 |
T |
|
| Q |
113 |
ttgtacatagacactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttg |
212 |
Q |
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| T |
8962322 |
ttgtacactgctactctagataacggggctattcctcttgctgttccatttgcataaccgaagaatgatgcaccattaacctgattccccgctaccgttg |
8962223 |
T |
|
| Q |
213 |
ttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtat |
269 |
Q |
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| T |
8962222 |
ttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttcactgttgttgtat |
8962166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 270
Target Start/End: Original strand, 9950079 - 9950240
Alignment:
| Q |
109 |
aatcttgtacatagacactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgct |
208 |
Q |
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|||||||||||||| ||||||||||||||| |||| | ||| |||| |||| |||||||||||||| ||||||||||||||||||||| | || | |
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| T |
9950079 |
aatcttgtacatagctactctagacaatgtaattatttcttttgtagttcgatttacataaccaaagaaaaatgcaccatcaacttgatttcaagttgtt |
9950178 |
T |
|
| Q |
209 |
gttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
270 |
Q |
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||| |||||||||||| | | | ||| ||| | || |||||| ||||| ||||||||||| |
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| T |
9950179 |
gttaatgaagtgtgggtctcttaatcatatgtatgacatgtagtattcacaattgttgtatt |
9950240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 8957404 - 8957346
Alignment:
| Q |
17 |
gaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatga |
75 |
Q |
| |
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| T |
8957404 |
gaaagaacatcaacaccgtctgatattgccgcgtcaattgcggctattacatcagatga |
8957346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 8957270 - 8957197
Alignment:
| Q |
163 |
tgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccat |
236 |
Q |
| |
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| T |
8957270 |
tgcataaccaaaaaatgaagcatcatcaactctgtttccagctgctgttgatgaagtgtgagtcccatgaccat |
8957197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 21687820 - 21688065
Alignment:
| Q |
17 |
gaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattttgtccccacacaatcttgt |
116 |
Q |
| |
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||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||| ||| ||| ||| || ||||||| || |||||| |
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| T |
21687820 |
gaaagaatgtcaacaccgtcagatattgcagcatcaattgcagctattatatcagatgaaagtgcg------tctccatcttttccccacgcagtcttgt |
21687913 |
T |
|
| Q |
117 |
acatagacactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttga |
216 |
Q |
| |
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| |||| ||||||||| ||| |||||| || ||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
21687914 |
atatagctactctagacgatgaagctatacctcttgctgttccatttgcatagccaaagaaagatgcaccatcaactttgcttccagctgctgttgttga |
21688013 |
T |
|
| Q |
217 |
agtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgta |
268 |
Q |
| |
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||| || || || ||||| |||||||||||||| | ||||| ||||||||| |
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| T |
21688014 |
agtatgtgtcccgtgaccgtttgtgtcacgtgtggagttcaaaattgttgta |
21688065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 34963572 - 34963657
Alignment:
| Q |
164 |
gcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgt |
249 |
Q |
| |
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|||||||||||||| |||||| |||||| |||| ||||||||||||||||| || ||||||||||| | |||||||||||| |
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| T |
34963572 |
gcataaccaaagaatgatgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgt |
34963657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 34963437 - 34963494
Alignment:
| Q |
17 |
gaaagaacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatg |
74 |
Q |
| |
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|||| |||||| |||||||| |||||||| || ||||||||||| |||| |||||||| |
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| T |
34963437 |
gaaataacatcgacaccgtcggatattgcagcgtcaattgcagctattacatcagatg |
34963494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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