View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_22 (Length: 266)
Name: NF13244_low_22
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 12382429 - 12382681
Alignment:
| Q |
1 |
taacaagccgattttgattatgatgtgttacgatagagaaatatgactagtgttagaacaacaaatccaactctaaagaaaacagatgaatcacgaaaca |
100 |
Q |
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| T |
12382429 |
taacgagccgattttgattatgatgtgttacgatagagaaatatgactagtgt-agaacaacaaatccgactctaaagaaaatagatgaatcacgaaaca |
12382527 |
T |
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| Q |
101 |
caatgattgatcatcgagttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12382528 |
caatgattgatcatcgagttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtac |
12382627 |
T |
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| Q |
201 |
aaattatatttaaaaactacaaaattgcaagaaggcagaagtttttgtctccta |
254 |
Q |
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| T |
12382628 |
aaattatatttaaaaactacaaaattgcaagaagacataagtttttgtctccta |
12382681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 12386496 - 12386748
Alignment:
| Q |
1 |
taacaagccgattttgattatgatgtgttacgatagagaaatatgactagtgttagaacaacaaatccaactctaaagaaaacagatgaatcacgaaaca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
12386496 |
taacgagccgattttgattatgatgtgttacgatagagaaatatgactagtgt-agaacaacaaatccgactctaaagaaaatagatgaatcacgaaaca |
12386594 |
T |
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| Q |
101 |
caatgattgatcatcgagttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtac |
200 |
Q |
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| T |
12386595 |
caatgattgatcatcgagttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtac |
12386694 |
T |
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| Q |
201 |
aaattatatttaaaaactacaaaattgcaagaaggcagaagtttttgtctccta |
254 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
12386695 |
aaattatatttaaaaactacaaaattgcaagaagacataagtttttgtctccta |
12386748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 12369191 - 12369424
Alignment:
| Q |
1 |
taacaagccgattttgattatgatgtgttacgatagagaaatatgactagtgttagaacaacaaatccaactctaaagaaaacagatgaatcacgaaaca |
100 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
12369191 |
taacgagccgattttgattatgatgtgttatgatagagaaatatgactagtgttagaacaacaaattcgactctaaagaaaacagatgaatcacgaaaca |
12369290 |
T |
|
| Q |
101 |
caatgattgatcatcgagttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtac |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
12369291 |
caatgattgatcatcaagttcagtcaatatgccaacatctccgacagctgtgtgactgttgtggtttttctgtaatgcaatgtttaaggttacatagtac |
12369390 |
T |
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| Q |
201 |
aaattatatttaaaaactacaaaattgcaagaag |
234 |
Q |
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|| | | |||||||||||||||||||||||||| |
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| T |
12369391 |
aaggtgtgtttaaaaactacaaaattgcaagaag |
12369424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 15846717 - 15846753
Alignment:
| Q |
166 |
ttttctgttatgcaatgcttaaggttacatagtacaa |
202 |
Q |
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| T |
15846717 |
ttttctattatgcaatgcttaagattacatagtacaa |
15846753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 15860777 - 15860813
Alignment:
| Q |
51 |
tgttagaacaacaaatccaactctaaagaaaacagat |
87 |
Q |
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| T |
15860777 |
tgttagaacaacaaacccaactctaaagcaaacagat |
15860813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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