View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_27 (Length: 242)
Name: NF13244_low_27
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 12382282 - 12382425
Alignment:
| Q |
77 |
attagagtatattttagatatggaaatgaattattatattattcacgcgctcaaatcaaatattgttgggtggagtatcataaaaatactcaaacgtcac |
176 |
Q |
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| T |
12382282 |
attagagtatattttagatatggaaatgaattattatattgttcacgcactcaaatcaaatattgttgggtagagtatcataaaaatactcaaacgtcac |
12382381 |
T |
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| Q |
177 |
gttagctggtgataagatctattagaacttacaaggtaatgttc |
220 |
Q |
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| T |
12382382 |
gttagctggtgataagatctattagaacttacaaggtaatgttc |
12382425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 12386349 - 12386492
Alignment:
| Q |
77 |
attagagtatattttagatatggaaatgaattattatattattcacgcgctcaaatcaaatattgttgggtggagtatcataaaaatactcaaacgtcac |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12386349 |
attagagtatattttagatatggaaatgaattattatattgttcacgcactcaaatcaaatattgttgggtagagtatcataaaaatactcaaacgtcac |
12386448 |
T |
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| Q |
177 |
gttagctggtgataagatctattagaacttacaaggtaatgttc |
220 |
Q |
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| T |
12386449 |
gttagctggtgataagatctattagaacttacaaggtaatgttc |
12386492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 12369044 - 12369187
Alignment:
| Q |
77 |
attagagtatattttagatatggaaatgaattattatattattcacgcgctcaaatcaaatattgttgggtggagtatcataaaaatactcaaacgtcac |
176 |
Q |
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| T |
12369044 |
attagagtatattttagatatggaaatgaattattatattattcacgcactcaaatcaaatattgttgggtggagtatcataaaaatactcgaacgtcgc |
12369143 |
T |
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| Q |
177 |
gttagctggtgataagatctattagaacttacaaggtaatgttc |
220 |
Q |
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| T |
12369144 |
attagatggtgataagatctattagaacttataaggtaatgttc |
12369187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12381932 - 12382010
Alignment:
| Q |
1 |
gtgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaatatccaatgttgagatt |
79 |
Q |
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| T |
12381932 |
gtgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaacatccaatgttcagatt |
12382010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12385999 - 12386077
Alignment:
| Q |
1 |
gtgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaatatccaatgttgagatt |
79 |
Q |
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| T |
12385999 |
gtgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaacatccaatgttcagatt |
12386077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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