View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13244_low_28 (Length: 238)

Name: NF13244_low_28
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13244_low_28
NF13244_low_28
[»] chr2 (30 HSPs)
chr2 (28-172)||(36317490-36317632)
chr2 (172-235)||(1923982-1924046)
chr2 (172-235)||(45408730-45408794)
chr2 (172-235)||(2818771-2818835)
chr2 (172-235)||(6605840-6605903)
chr2 (172-238)||(9933572-9933638)
chr2 (172-237)||(10552984-10553050)
chr2 (172-235)||(7737170-7737234)
chr2 (172-235)||(24101834-24101898)
chr2 (172-235)||(27920677-27920741)
chr2 (172-238)||(16705835-16705902)
chr2 (172-222)||(34455887-34455938)
chr2 (172-215)||(16705735-16705779)
chr2 (172-215)||(20892886-20892930)
chr2 (172-215)||(34490581-34490625)
chr2 (172-235)||(43476051-43476115)
chr2 (172-215)||(45408627-45408671)
chr2 (172-238)||(3116978-3117045)
chr2 (191-238)||(42713799-42713846)
chr2 (192-238)||(9850781-9850827)
chr2 (174-235)||(12850546-12850608)
chr2 (172-215)||(1924106-1924150)
chr2 (172-215)||(3116878-3116922)
chr2 (172-215)||(7737066-7737110)
chr2 (172-215)||(8111698-8111742)
chr2 (172-215)||(9281472-9281516)
chr2 (172-215)||(9933694-9933738)
chr2 (172-215)||(23835878-23835922)
chr2 (172-215)||(24101957-24102001)
chr2 (172-215)||(34490458-34490502)
[»] chr4 (33 HSPs)
chr4 (172-235)||(18417762-18417826)
chr4 (172-238)||(24915796-24915863)
chr4 (172-235)||(530671-530735)
chr4 (172-235)||(24969543-24969607)
chr4 (172-235)||(55107629-55107693)
chr4 (172-238)||(1299014-1299081)
chr4 (172-235)||(21048707-21048771)
chr4 (172-235)||(32318722-32318786)
chr4 (172-235)||(42274494-42274558)
chr4 (172-238)||(43486202-43486269)
chr4 (172-215)||(1298914-1298958)
chr4 (172-227)||(4688249-4688305)
chr4 (174-238)||(16995559-16995623)
chr4 (172-238)||(3422431-3422498)
chr4 (172-215)||(530794-530838)
chr4 (172-235)||(4552890-4552954)
chr4 (172-235)||(13204482-13204546)
chr4 (172-215)||(18417659-18417703)
chr4 (172-215)||(20435265-20435309)
chr4 (172-235)||(27434715-27434779)
chr4 (172-238)||(28809848-28809916)
chr4 (172-215)||(52824241-52824285)
chr4 (172-235)||(55049402-55049466)
chr4 (172-235)||(23928570-23928633)
chr4 (174-235)||(9355557-9355619)
chr4 (172-215)||(13204379-13204423)
chr4 (172-235)||(20435142-20435206)
chr4 (172-215)||(24969669-24969713)
chr4 (172-215)||(27434612-27434656)
chr4 (172-215)||(28573949-28573993)
chr4 (172-215)||(28809972-28810016)
chr4 (172-215)||(37525068-37525112)
chr4 (172-215)||(42274618-42274662)
[»] scaffold0653 (1 HSPs)
scaffold0653 (172-235)||(3395-3459)
[»] chr7 (36 HSPs)
chr7 (172-235)||(9285716-9285780)
chr7 (172-235)||(9289783-9289847)
chr7 (172-235)||(31231616-31231680)
chr7 (172-235)||(24836125-24836189)
chr7 (174-238)||(30259070-30259135)
chr7 (172-235)||(20184240-20184304)
chr7 (172-235)||(34052384-34052448)
chr7 (172-235)||(35339280-35339344)
chr7 (172-235)||(45997510-45997574)
chr7 (172-235)||(39143714-39143778)
chr7 (173-235)||(30594798-30594861)
chr7 (172-238)||(35665635-35665702)
chr7 (172-232)||(10936472-10936533)
chr7 (172-235)||(3953044-3953108)
chr7 (172-215)||(10936595-10936639)
chr7 (172-215)||(29277840-29277884)
chr7 (172-215)||(30259191-30259235)
chr7 (172-215)||(31231741-31231785)
chr7 (172-215)||(33721829-33721873)
chr7 (172-215)||(38528537-38528581)
chr7 (172-235)||(39617843-39617907)
chr7 (172-214)||(17101656-17101699)
chr7 (172-214)||(17101700-17101743)
chr7 (172-214)||(24836022-24836065)
chr7 (172-235)||(40358220-40358287)
chr7 (172-225)||(48103480-48103534)
chr7 (189-238)||(31521545-31521594)
chr7 (172-212)||(35665744-35665785)
chr7 (171-235)||(37093873-37093938)
chr7 (172-215)||(3953167-3953211)
chr7 (172-215)||(34052281-34052325)
chr7 (172-215)||(38883223-38883267)
chr7 (172-215)||(38883346-38883390)
chr7 (172-215)||(39143831-39143875)
chr7 (172-224)||(47237435-47237487)
chr7 (172-215)||(47237553-47237597)
[»] chr8 (19 HSPs)
chr8 (172-238)||(15882303-15882370)
chr8 (172-235)||(17426630-17426694)
chr8 (172-235)||(40891118-40891182)
chr8 (174-235)||(24741827-24741889)
chr8 (172-228)||(24211280-24211337)
chr8 (172-235)||(38629579-38629643)
chr8 (172-238)||(37114340-37114407)
chr8 (174-238)||(14834676-14834741)
chr8 (172-215)||(15882202-15882246)
chr8 (172-222)||(37114240-37114291)
chr8 (172-235)||(12234572-12234636)
chr8 (172-235)||(23940806-23940870)
chr8 (172-215)||(24211403-24211447)
chr8 (172-215)||(33100647-33100691)
chr8 (172-235)||(38520123-38520187)
chr8 (174-235)||(35467275-35467337)
chr8 (183-235)||(4261989-4262042)
chr8 (172-215)||(8210325-8210369)
chr8 (172-215)||(17426755-17426799)
[»] chr1 (47 HSPs)
chr1 (172-238)||(27240926-27240993)
chr1 (172-235)||(47940572-47940636)
chr1 (174-238)||(49284298-49284363)
chr1 (172-238)||(50162540-50162607)
chr1 (171-215)||(50162664-50162709)
chr1 (172-235)||(3607731-3607795)
chr1 (172-235)||(5189574-5189638)
chr1 (172-235)||(14387017-14387081)
chr1 (172-235)||(19954913-19954977)
chr1 (172-227)||(29598450-29598506)
chr1 (172-235)||(40647223-40647287)
chr1 (172-235)||(42561297-42561361)
chr1 (172-215)||(42561420-42561464)
chr1 (172-235)||(51789599-51789663)
chr1 (174-238)||(957691-957756)
chr1 (172-236)||(2125072-2125137)
chr1 (172-235)||(362462-362526)
chr1 (172-235)||(2854534-2854598)
chr1 (172-215)||(3607854-3607898)
chr1 (172-215)||(5189471-5189515)
chr1 (172-215)||(9978177-9978221)
chr1 (172-215)||(15324628-15324672)
chr1 (172-215)||(19797106-19797150)
chr1 (172-215)||(19955036-19955080)
chr1 (172-235)||(23698504-23698568)
chr1 (172-235)||(48954216-48954280)
chr1 (172-215)||(49285100-49285144)
chr1 (172-215)||(51276820-51276864)
chr1 (172-230)||(21930488-21930547)
chr1 (174-227)||(27928302-27928356)
chr1 (171-235)||(15324732-15324797)
chr1 (172-212)||(19796983-19797024)
chr1 (172-215)||(1387903-1387947)
chr1 (172-215)||(2854657-2854701)
chr1 (172-215)||(4299520-4299564)
chr1 (172-235)||(9978053-9978117)
chr1 (172-215)||(14387140-14387184)
chr1 (172-215)||(23698627-23698671)
chr1 (172-215)||(25297972-25298016)
chr1 (172-235)||(26208530-26208594)
chr1 (172-215)||(27241049-27241093)
chr1 (172-227)||(27926253-27926309)
chr1 (172-215)||(27926377-27926421)
chr1 (172-215)||(36880636-36880680)
chr1 (172-215)||(47940696-47940740)
chr1 (172-215)||(48954339-48954383)
chr1 (172-215)||(50627133-50627177)
[»] chr6 (20 HSPs)
chr6 (175-238)||(4238956-4239020)
chr6 (172-235)||(14393669-14393733)
chr6 (172-235)||(15546737-15546801)
chr6 (172-235)||(21379943-21380007)
chr6 (172-235)||(8091167-8091231)
chr6 (172-215)||(885387-885431)
chr6 (172-235)||(4890482-4890546)
chr6 (172-238)||(885487-885554)
chr6 (172-215)||(7808734-7808778)
chr6 (172-235)||(13439801-13439865)
chr6 (172-215)||(21380066-21380110)
chr6 (172-226)||(6433692-6433747)
chr6 (179-235)||(3369090-3369147)
chr6 (190-235)||(6433762-6433807)
chr6 (172-215)||(4890606-4890650)
chr6 (172-215)||(11687145-11687189)
chr6 (172-215)||(11687268-11687312)
chr6 (172-215)||(15546634-15546678)
chr6 (172-235)||(18998119-18998182)
chr6 (171-222)||(18998235-18998287)
[»] chr3 (57 HSPs)
chr3 (172-235)||(4072275-4072339)
chr3 (172-235)||(12789711-12789775)
chr3 (172-235)||(13723990-13724053)
chr3 (172-235)||(21969159-21969223)
chr3 (172-235)||(21991595-21991659)
chr3 (172-235)||(45487904-45487968)
chr3 (172-235)||(3970493-3970557)
chr3 (172-235)||(8831846-8831910)
chr3 (172-235)||(13078165-13078229)
chr3 (172-235)||(22176214-22176278)
chr3 (172-235)||(50099539-50099603)
chr3 (172-238)||(10254671-10254738)
chr3 (172-238)||(32237396-32237463)
chr3 (172-235)||(25446355-25446418)
chr3 (172-215)||(25488466-25488510)
chr3 (172-215)||(25561013-25561057)
chr3 (172-238)||(26976844-26976911)
chr3 (172-222)||(32237512-32237563)
chr3 (172-238)||(35368835-35368902)
chr3 (174-235)||(1476555-1476617)
chr3 (172-215)||(5529893-5529937)
chr3 (172-215)||(12838079-12838123)
chr3 (172-235)||(12838182-12838246)
chr3 (172-215)||(21969282-21969326)
chr3 (172-215)||(21991718-21991762)
chr3 (172-235)||(22101270-22101334)
chr3 (172-235)||(25488343-25488407)
chr3 (172-235)||(25561116-25561180)
chr3 (172-235)||(26906559-26906623)
chr3 (172-235)||(36278758-36278822)
chr3 (172-235)||(44611384-44611447)
chr3 (172-215)||(45487801-45487845)
chr3 (172-235)||(45712905-45712969)
chr3 (172-226)||(10117625-10117680)
chr3 (173-214)||(45713029-45713071)
chr3 (174-214)||(8831744-8831785)
chr3 (174-238)||(42105387-42105452)
chr3 (189-238)||(46222048-46222097)
chr3 (172-235)||(404150-404213)
chr3 (172-215)||(3970616-3970660)
chr3 (172-215)||(4072399-4072443)
chr3 (172-215)||(10017116-10017160)
chr3 (172-215)||(10017234-10017278)
chr3 (172-215)||(10254570-10254614)
chr3 (172-215)||(10441383-10441427)
chr3 (172-215)||(12789608-12789652)
chr3 (172-215)||(26906456-26906500)
chr3 (172-215)||(35368551-35368595)
chr3 (172-215)||(36278881-36278925)
chr3 (172-215)||(36657435-36657479)
chr3 (172-215)||(36657558-36657602)
chr3 (172-215)||(36822762-36822806)
chr3 (172-215)||(36822885-36822929)
chr3 (172-215)||(38125304-38125348)
chr3 (172-215)||(39850470-39850514)
chr3 (172-235)||(43639083-43639147)
chr3 (172-215)||(43639207-43639251)
[»] scaffold0122 (2 HSPs)
scaffold0122 (172-238)||(45936-46003)
scaffold0122 (172-215)||(45836-45880)
[»] scaffold0595 (2 HSPs)
scaffold0595 (172-235)||(5810-5876)
scaffold0595 (172-215)||(5703-5747)
[»] chr5 (30 HSPs)
chr5 (172-235)||(20476536-20476600)
chr5 (172-238)||(33629347-33629414)
chr5 (172-235)||(21259732-21259796)
chr5 (173-235)||(12744931-12744994)
chr5 (173-235)||(12808016-12808079)
chr5 (174-215)||(8364755-8364797)
chr5 (174-235)||(19976367-19976429)
chr5 (174-235)||(32623219-32623281)
chr5 (171-215)||(24397371-24397416)
chr5 (172-232)||(37552310-37552371)
chr5 (174-221)||(780911-780959)
chr5 (172-227)||(2268718-2268774)
chr5 (172-235)||(4266087-4266151)
chr5 (172-235)||(21591215-21591279)
chr5 (172-235)||(21595332-21595396)
chr5 (172-238)||(1138661-1138728)
chr5 (174-231)||(4913258-4913316)
chr5 (174-235)||(10132359-10132421)
chr5 (172-212)||(17583367-17583408)
chr5 (172-235)||(780796-780860)
chr5 (172-215)||(1138561-1138605)
chr5 (172-215)||(2255587-2255631)
chr5 (172-215)||(4265984-4266028)
chr5 (172-235)||(13754293-13754357)
chr5 (172-215)||(15855845-15855889)
chr5 (172-215)||(15855968-15856012)
chr5 (172-215)||(16473080-16473124)
chr5 (172-215)||(20476433-20476477)
chr5 (172-215)||(35420614-35420658)
chr5 (172-215)||(35420737-35420781)
[»] scaffold0163 (2 HSPs)
scaffold0163 (172-235)||(1941-2005)
scaffold0163 (172-215)||(2065-2109)
[»] scaffold0086 (1 HSPs)
scaffold0086 (172-238)||(48228-48295)
[»] scaffold0188 (1 HSPs)
scaffold0188 (172-235)||(7191-7255)
[»] scaffold0107 (2 HSPs)
scaffold0107 (172-235)||(51168-51232)
scaffold0107 (172-215)||(51065-51109)
[»] scaffold0137 (1 HSPs)
scaffold0137 (172-238)||(10217-10284)
[»] scaffold0118 (1 HSPs)
scaffold0118 (172-230)||(14552-14611)
[»] scaffold0006 (1 HSPs)
scaffold0006 (176-238)||(72294-72357)
[»] scaffold0069 (1 HSPs)
scaffold0069 (172-212)||(26407-26448)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 36317632 - 36317490
Alignment:
Q  28 ccctagtagtgttaactctttaactatgtcttttccacatacttatcgccacataacaaacaattacgatcatttcgaattctacatgtgtcatcaatca 127  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  36317632 ccctagtagtgttaactctt-aactatgtcttt-ccacatacttatcgccacataataaacaattacgatcatttcgaattctacatgtatcatcaatca 36317535  T
Q  128 cgaaccacgagctacttatgtgtaattctcgaccaattaacaata 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36317534 cgaaccacgagctacttatgtgtaattctcgaccaattaacaata 36317490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 1923982 - 1924046
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||||    
T  1923982 agaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcaccatgattt 1924046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 45408794 - 45408730
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||    
T  45408794 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaattaaatttaccatgattt 45408730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 2818835 - 2818771
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| | |||||||||||||||||    
T  2818835 agaaaacttaggtacaattctttaggtgtttttcgtatggttcttaactaaattcaccatgattt 2818771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 6605903 - 6605840
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||    
T  6605903 agaaaacttaggtacaattctttaggtgctttttgtatggttctt-actaaatttaccatgattt 6605840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 9933572 - 9933638
Alignment:
Q  172 agaaaacttaggtacaattcttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| |  ||||||||  |||||||||| | ||||||||||||||||||||    
T  9933572 agaaaacttaggtacaattcattagtgcttttcctatggttcttaactaaattcaccatgattttct 9933638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 10553050 - 10552984
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttc 237  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||| | |||||||||||||||||||    
T  10553050 agaaaacttaggtacaattccttaggtgtttttcgtatgattcttaactaaattcaccatgattttc 10552984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 7737234 - 7737170
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||| | |||||| ||||||||||    
T  7737234 agaaaacttaggtacaattccttaggtgcttttcgtatgattcttaactaaatttaccatgattt 7737170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 24101834 - 24101898
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||  ||||||||||    
T  24101834 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaatataccatgattt 24101898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 27920741 - 27920677
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| || || ||||||| ||||||||||| | |||||||||||||||||    
T  27920741 agaaaacttaggtacaattttttagctgcttttcgtatggttcttaactaaattcaccatgattt 27920677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 16705902 - 16705835
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||| ||||||||||||| |||||||||||| |||||||| || | ||||||||| ||||||||||    
T  16705902 agaaaatttaggtacaattccttaggtgcttttcgtatggtttttaactaaattcactatgattttct 16705835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 34455887 - 34455938
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaa 222  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  34455887 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaattaaa 34455938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 16705735 - 16705779
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  16705735 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 16705779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 20892886 - 20892930
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  20892886 agaaaacttaggtacaatttcttaggtgcttttcgtatggttctt 20892930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 34490625 - 34490581
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  34490625 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 34490581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 43476115 - 43476051
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| ||||||| ||||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  43476115 agaaaatttaggtataattccttaggtgtttttcgtatggttcttaactaaattcaccatgattt 43476051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 45408627 - 45408671
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||    
T  45408627 agaaaacttaggtacaattccttaggtgttttttgtatggttctt 45408671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 3117045 - 3116978
Alignment:
Q  172 agaaaacttaggtacaattct-taggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||| | ||||||||  ||||||||||    
T  3117045 agaaaacttaggtacaattccatagctgcttttcgtatggttcttaactaaattcattatgattttct 3116978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 42713799 - 42713846
Alignment:
Q  191 cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||| |||| ||||||||||| | ||||||||||||||||||||    
T  42713799 cttaggtgtttttcgtatggttcttaactaaattcaccatgattttct 42713846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 9850781 - 9850827
Alignment:
Q  192 ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||| ||||||||||| | |||||| |||||||||||||    
T  9850781 ttaggtgcttttcgtatggttcttaactaaatttaccatgattttct 9850827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 12850546 - 12850608
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||| ||||||||||||| |||||| |||||||||||||| || | |||||| ||||||||||    
T  12850546 aaaatttaggtacaattccttaggtactttttgtatggtttttaactaaatttaccatgattt 12850608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 1924150 - 1924106
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  1924150 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 1924106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 3116878 - 3116922
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| || ||||||||| |||||||||||    
T  3116878 agaaaacttaggtacaattcttttggtgcttttcgtatggttctt 3116922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 7737066 - 7737110
Alignment:
Q  172 agaaaacttaggtacaa-ttcttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||    
T  7737066 agaaaacttaggtacaatttcttaggtgcttttggtatgattctt 7737110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 8111742 - 8111698
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  8111742 agaaaacttagttacaatttcttaggtcctttttgtatggttctt 8111698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 9281516 - 9281472
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  9281516 agaaaacttaggtacaattccttaggtccttttcgtatggttctt 9281472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 9933738 - 9933694
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||    
T  9933738 agaaaatttaggtacaatttcttaggtgcttttcgtatggttctt 9933694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 23835878 - 23835922
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||    
T  23835878 agaaaacttatgtacaattccttaggtgcttttcgtatggttctt 23835922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 24102001 - 24101957
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||    
T  24102001 agaaaacttaagtacaattccttaggtgcttttcgtatggttctt 24101957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 34490458 - 34490502
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||    
T  34490458 agaaaacttaggtacaattctttaggtgtttttcgtatggttctt 34490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 18417826 - 18417762
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  18417826 agaaaacttaggtacaattccttaggtgctttttgtatggttcttaattaaattcaccatgattt 18417762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 24915796 - 24915863
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||    
T  24915796 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattttct 24915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 530671 - 530735
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||    
T  530671 agaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaaattcaccatcattt 530735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 24969543 - 24969607
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||    
T  24969543 agaaaacttaggtacaattctttaggtgcttttcgtatggttcttaactaaattcaccatgattt 24969607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 55107693 - 55107629
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||    
T  55107693 agaaaacttaggtacaattccttaggtgctttttgtatggttctttactaaatttaccatgattt 55107629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 1299081 - 1299014
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| ||||||||||||  |||||||||| | ||||||||||||||||||||    
T  1299081 agaaaacttaggtacaattccttaggtgcttttcttatggttcttaactaaattcaccatgattttct 1299014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21048707 - 21048771
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||| | |||||||||||||||||    
T  21048707 agaaaacttaggtacaattcgttagatgcttttcgtatggttcttaactaaattcaccatgattt 21048771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 32318722 - 32318786
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||| | |||||||||||||||||    
T  32318722 agaaaacttaggtacaattccttatgtgcttttcgtatggttcttaactaaattcaccatgattt 32318786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 42274494 - 42274558
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||| | |||||||||||||||||    
T  42274494 agaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaattcaccatgattt 42274558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 43486202 - 43486269
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| |||||| |||||  |||||||||| | ||||||||||||||||||||    
T  43486202 agaaaacttaggtacaattccttaggtacttttcctatggttcttaactaaattcaccatgattttct 43486269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 1298914 - 1298958
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  1298914 agaaaacttaggtacaattccttaggtgctttttgtatggttctt 1298958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 4688249 - 4688305
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcac 227  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||    
T  4688249 agaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcac 4688305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 16995559 - 16995623
Alignment:
Q  174 aaaacttaggtacaattcttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||| | |||| |||| |||||||| || |||||||||| |||||||||||    
T  16995559 aaaacttaggtacaattccttggtgtttttcgtatggtttttaattaaattcaacatgattttct 16995623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 3422431 - 3422498
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||| |||||||| |  ||||||||||    
T  3422431 agaaaacttaggtacaatttcttaggtgcttttcgtatagttcttaattaaatttagtatgattttct 3422498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 530838 - 530794
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  530838 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 530794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 4552954 - 4552890
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||  |||||| |||||||||||| | |||||||| ||||||||    
T  4552954 agaaaacttaggtacaattccttatatgctttctgtatggttcttaactaaattcatcatgattt 4552890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 13204546 - 13204482
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| || ||||| |||||||| || | |||||||||||||||||    
T  13204546 agaaaacttaggtacaattccttatgtacttttcgtatggtttttaactaaattcaccatgattt 13204482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 18417659 - 18417703
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  18417659 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 18417703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 20435309 - 20435265
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  20435309 agaaaacttaggtacaattctttaggtgcttttcgtatggttctt 20435265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 27434779 - 27434715
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||| | |||||| ||||| ||||    
T  27434779 agaaaacttaagtacaattccttaggtgcttttcgtatggttcttaactaaatttaccataattt 27434715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 28809848 - 28809916
Alignment:
Q  172 agaaaacttaggtacaa-ttcttaggtgctttttgtatggttcttgattaaa-ttcaccatgattttct 238  Q
    ||||||||||||||||| ||||||||||||||| |||| ||| || | |||| ||||||||||||||||    
T  28809848 agaaaacttaggtacaatttcttaggtgcttttggtattgtttttaactaaatttcaccatgattttct 28809916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 52824241 - 52824285
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  52824241 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 52824285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 55049402 - 55049466
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||| ||||||||| |||||||||||| |||| |||||| | ||||||||| |||||||    
T  55049402 agaaaacttatgtacaattccttaggtgcttttcgtatagttcttaactaaattcactatgattt 55049466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 23928570 - 23928633
Alignment:
Q  172 agaaaacttaggtacaattcttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |  ||| |||| ||||| ||||| | |||||||||||||||||    
T  23928570 agaaaacttaggtacaattccttagtgtttttcgtatgattcttaactaaattcaccatgattt 23928633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 9355557 - 9355619
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||  ||||||||| ||||||||||||  |||||||||| | |||||||||||||||||    
T  9355557 aaaacttccgtacaattccttaggtgcttttcatatggttcttaactaaattcaccatgattt 9355619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 13204379 - 13204423
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  13204379 agaaaacttagatacaattacttaggtactttttgtatggttctt 13204423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 20435142 - 20435206
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||  |||||||| |||| ||||||| ||||||||||| | |||||||| ||||||||    
T  20435142 agaaaacttatatacaattccttagatgcttttcgtatggttcttaactaaattcatcatgattt 20435206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 24969713 - 24969669
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||||    
T  24969713 agaaaacttaggtacaattccttaggtgcttttcgtatagttctt 24969669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 27434612 - 27434656
Alignment:
Q  172 agaaaacttaggtacaa-ttcttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||    
T  27434612 agaaaacttaggtacaatttcttatgtgctttttgtatagttctt 27434656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 28573949 - 28573993
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||    
T  28573949 agaaaacttaggtacaattacttaggtgcttttcgcatggttctt 28573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 28810016 - 28809972
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  28810016 agaaaacttaggtacaatttcttagctgcttttggtatggttctt 28809972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 37525112 - 37525068
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| || ||||||||    
T  37525112 agaaaacttaggtacaattctttaggtgcttttcgtgtggttctt 37525068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 42274662 - 42274618
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  42274662 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 42274618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 3395 - 3459
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||    
T  3395 agaaaacttaggtacaattcatttggtgctttttgtatggttcttaattaaattcaccatgattt 3459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 9285716 - 9285780
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||    
T  9285716 agaaaacttaggtacaattcatttggtgctttttgtatggttcttaattaaattcaccatgattt 9285780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 9289783 - 9289847
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||    
T  9289783 agaaaacttaggtacaattcatttggtgctttttgtatggttcttaattaaattcaccatgattt 9289847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 31231616 - 31231680
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  31231616 agaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaaattcaccatgattt 31231680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 24836189 - 24836125
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  24836189 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 24836125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 30259070 - 30259135
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||| ||||||||||||  |||||||||| | ||||||||||||||||||||    
T  30259070 aaaacttaggtacaattccttaggtgcttttcctatggttcttaactaaattcaccatgattttct 30259135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 20184240 - 20184304
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||| | |||||||||||||||||    
T  20184240 agaaaacttaggtacaattccttaggtgcttttcgtatgattcttaactaaattcaccatgattt 20184304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 34052448 - 34052384
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| |||||||||||   |||||||||||||||||    
T  34052448 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttagctaaattcaccatgattt 34052384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 35339280 - 35339344
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||| ||||||||    
T  35339280 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcatcatgattt 35339344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 45997510 - 45997574
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| | || |||||||||||||||||||| | |||||||||||||||||    
T  45997510 agaaaacttaggtacaatttcatatgtgctttttgtatggttcttaactaaattcaccatgattt 45997574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 39143714 - 39143778
Alignment:
Q  172 agaaaacttaggtacaattcttagg-tgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| | || ||||||| ||||||||||||| |||||||||||| ||||    
T  39143714 agaaaacttaggtacaattcattggatgcttttcgtatggttcttgactaaattcaccataattt 39143778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 30594861 - 30594798
Alignment:
Q  173 gaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||| |||||||||||||| |||| ||||||| ||||||||||| | |||||||||||||||||    
T  30594861 gaaagcttaggtacaattccttagatgcttttcgtatggttcttaactaaattcaccatgattt 30594798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 35665635 - 35665702
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||   |||||||||||||    
T  35665635 agaaaacttaggtacaattgcttaggtgcttttcgtatggttcttaactaaaaataccatgattttct 35665702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 10936472 - 10936533
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatga 232  Q
    |||||||||| ||||||||| |||||||||||| ||| ||||||| | ||||||||||||||    
T  10936472 agaaaacttatgtacaattccttaggtgcttttcgtacggttcttaactaaattcaccatga 10936533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 3953044 - 3953108
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| || ||||| |||||||| || | |||||||||||||||||    
T  3953044 agaaaacttaggtacaattccttatgtacttttcgtatggtttttaactaaattcaccatgattt 3953108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 10936639 - 10936595
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  10936639 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 10936595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 29277840 - 29277884
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  29277840 agaaaacttaggtacaattctttaggtactttttgtatggttctt 29277884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 30259235 - 30259191
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  30259235 agaaaacttaggtacaattccttgggtgctttttgtatggttctt 30259191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 31231785 - 31231741
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  31231785 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 31231741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 33721829 - 33721873
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  33721829 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 33721873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 38528581 - 38528537
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  38528581 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 38528537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 39617843 - 39617907
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||| || | || ||||||||||| | |||||||||||||||||    
T  39617843 agaaaacttaggtacaatttcttagatgttcttcgtatggttcttaactaaattcaccatgattt 39617907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 17101656 - 17101699
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttct 214  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  17101656 agaaaacttaggtacaatttcttaggtgcttttcgtatggttct 17101699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 17101743 - 17101700
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttct 214  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  17101743 agaaaacttaggtacaatttcttaggtgcttttcgtatggttct 17101700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 24836022 - 24836065
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttct 214  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  24836022 agaaaacttaggtacaattgcttaggtgcttttcgtatggttct 24836065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 40358287 - 40358220
Alignment:
Q  172 agaaaacttaggtacaattc----ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||||    ||||||||||||  |||| ||||| | |||||||||||||||||    
T  40358287 agaaaacttaggtacaattcctccttaggtgcttttcctatgattcttaactaaattcaccatgattt 40358220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 48103534 - 48103480
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattc 225  Q
    ||||||||||  |||||||||| |||||||||||||||||||||| | |||||||    
T  48103534 agaaaacttatctacaattctttaggtgctttttgtatggttcttaactaaattc 48103480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 31521545 - 31521594
Alignment:
Q  189 ttcttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||| ||||||| ||||||||||| | |||||| |||||||||||||    
T  31521545 ttcttagatgcttttcgtatggttcttaactaaatttaccatgattttct 31521594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 35665785 - 35665744
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggtt 212  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  35665785 agaaaacttaggtacaattccttaggtgcttttcgtatggtt 35665744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 37093938 - 37093873
Alignment:
Q  171 tagaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||| |||| ||||||| ||||||| ||||| |||||||| || | |||||||||||||||||    
T  37093938 tagaaaatttagatacaatttcttaggtacttttcgtatggtttttaactaaattcaccatgattt 37093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 3953211 - 3953167
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  3953211 agaaaacttagatacaattacttaggtactttttgtatggttctt 3953167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 34052281 - 34052325
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||    
T  34052281 agaaaacttaggtacatttccttaggtgcttttcgtatggttctt 34052325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 38883223 - 38883267
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  38883223 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 38883267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 38883390 - 38883346
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  38883390 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 38883346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 39143875 - 39143831
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||    
T  39143875 agaaaacttaggtacaattcattaggtgtttttcgtatggttctt 39143831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 47237435 - 47237487
Alignment:
Q  172 agaaaacttaggtacaattcttaggtgctttttgtatggttcttgattaaatt 224  Q
    |||||||||||||| ||||| |||||||||||  |||||||||| | ||||||    
T  47237435 agaaaacttaggtataattcctaggtgcttttcctatggttcttaactaaatt 47237487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 47237597 - 47237553
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| || |||||||||| |||||||||||    
T  47237597 agaaaacttaggtacaatttctaaggtgcttttcgtatggttctt 47237553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 15882370 - 15882303
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||    
T  15882370 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattttct 15882303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 17426630 - 17426694
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  17426630 agaaaacttaggtacaattcattaggtgcttttcgtatggttcttaactaaattcaccatgattt 17426694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 40891182 - 40891118
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  40891182 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 40891118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 24741827 - 24741889
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  24741827 aaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 24741889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 24211280 - 24211337
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcacc 228  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  24211280 agaaaacttaggtacaattctttaggtgcttttcgtatggttcttaattaaattcacc 24211337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 38629643 - 38629579
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  38629643 agaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaattcaccatgattt 38629579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 37114407 - 37114340
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||| ||||||||||||||| || || |||||||||||||||| | ||||||||||||||||||||    
T  37114407 agaaaatttaggtacaattctttagatgttttttgtatggttcttaactaaattcaccatgattttct 37114340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 14834676 - 14834741
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||| ||||||||| ||| |||||||| ||||||||||| | ||||||||||||||||||||    
T  14834676 aaaacttacgtacaattccttacgtgcttttcgtatggttcttaactaaattcaccatgattttct 14834741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 15882202 - 15882246
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  15882202 agaaaacttaggtacaattccttaggtgctttttgtatggttctt 15882246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 37114240 - 37114291
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaa 222  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  37114240 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaattaaa 37114291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 12234636 - 12234572
Alignment:
Q  172 agaaaacttaggtacaa-ttcttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||| ||||||| ||||||| |||||||| || | ||||||||| |||||||    
T  12234636 agaaaacttaggtacaatttcttagatgcttttcgtatggttattaactaaattcacgatgattt 12234572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 23940806 - 23940870
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||| ||||||||| |||| |||||||| ||||| ||||| | |||||||||||||||||    
T  23940806 agaaaacttcggtacaatttcttaagtgcttttcgtatgattcttaactaaattcaccatgattt 23940870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 24211447 - 24211403
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  24211447 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 24211403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 33100647 - 33100691
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  33100647 agaaaacttaggtacaatttcttaggtgcttttcgtatggttctt 33100691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 38520187 - 38520123
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| |||||||| ||||| || || | |||||||||||||||||    
T  38520187 agaaaacttaggtacaattccttaagtgcttttcgtatgttttttaactaaattcaccatgattt 38520123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 35467337 - 35467275
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||| ||||||||| ||| |||||||| ||||||||||| | |||||||| ||||||||    
T  35467337 aaaacttacgtacaattccttatgtgcttttcgtatggttcttaactaaattcatcatgattt 35467275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 4261989 - 4262042
Alignment:
Q  183 gtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||| |||||||||| ||||||||||| | ||||||||| |||||||    
T  4261989 gtacaattctttaggtgcttttcgtatggttcttaactaaattcactatgattt 4262042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 8210325 - 8210369
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||    
T  8210325 agaaaacttaggtacaattccttaggtgcttttcgtatgattctt 8210369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 17426799 - 17426755
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| || |||||||||| |||||||||||    
T  17426799 agaaaacttaggtacaattttttaggtgcttttcgtatggttctt 17426755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 27240926 - 27240993
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||    
T  27240926 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattttct 27240993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 47940572 - 47940636
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||||    
T  47940572 agaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcaccatgattt 47940636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 49284298 - 49284363
Alignment:
Q  174 aaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||| ||||| || |||||||||||||||| | ||||||||||||||||||||    
T  49284298 aaaacttaggtacaatttcttagttgttttttgtatggttcttaactaaattcaccatgattttct 49284363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 50162540 - 50162607
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| ||||||  ||||||||||||| || |||||||||||| |||||||||    
T  50162540 agaaaacttaggtacaattccttaggtattttttgtatggtttttaattaaattcaccgtgattttct 50162607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 50162709 - 50162664
Alignment:
Q  171 tagaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  50162709 tagaaaacttaggtacaattccttaggtgctttttgtatggttctt 50162664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 3607731 - 3607795
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||| | |||||||| ||||||||    
T  3607731 agaaaatttaggtagaatttcttaggtgctttttgtatggttcttaactaaattcatcatgattt 3607795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 5189638 - 5189574
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| ||||||||||||| |||| ||||||| ||||||||||| | |||||||||||||||||    
T  5189638 agaaaatttaggtacaattccttagatgcttttcgtatggttcttaactaaattcaccatgattt 5189574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 14387017 - 14387081
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||| | |||||||||||||||||    
T  14387017 agaaaacttaggtacaattccttagatgcatttcgtatggttcttaactaaattcaccatgattt 14387081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 19954913 - 19954977
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| |||||||| |||| |||||| | |||||||||||||||||    
T  19954913 agaaaacttaggtacaattccttatgtgcttttcgtatagttcttaactaaattcaccatgattt 19954977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 29598506 - 29598450
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcac 227  Q
    |||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||    
T  29598506 agaaaacttaggtacaattcgttaggtactttttgtatggttcttaactaaattcac 29598450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 40647287 - 40647223
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||| || || | |||||||||||||||||    
T  40647287 agaaaacttaggtacaattccttaggtgcttttcgtatgatttttaactaaattcaccatgattt 40647223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 42561297 - 42561361
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||| |||| ||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  42561297 agaaatcttaagtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 42561361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 42561464 - 42561420
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  42561464 agaaaacttaggtacaattccttaggtgctttttgtatggttctt 42561420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 51789599 - 51789663
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||||||| |||| |||||||| || | |||||||||||||||||    
T  51789599 agaaaacttaggtacaattccttaggtgattttcgtatggtttttaactaaattcaccatgattt 51789663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 957756 - 957691
Alignment:
Q  174 aaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||| ||||||| |||||||| |||| ||||| ||||| | ||||||||||||||||||||    
T  957756 aaaacttagatacaatttcttaggtgtttttcgtatgattcttaactaaattcaccatgattttct 957691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 2125072 - 2125137
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgatttt 236  Q
    |||||| |||| ||||||| |||| |||||||| ||||||||||| | ||||||||||||||||||    
T  2125072 agaaaatttagttacaatttcttatgtgcttttcgtatggttcttaactaaattcaccatgatttt 2125137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 362526 - 362462
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| ||||||||||||||| |||||||||| ||||| ||||| | |||||| ||||||||||    
T  362526 agaaaatttaggtacaattctttaggtgcttttcgtatgattcttaactaaatttaccatgattt 362462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 2854534 - 2854598
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||| | ||||| ||||||||||| | ||||||||| |||||||    
T  2854534 agaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgattt 2854598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 3607898 - 3607854
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  3607898 agaaaacttaggtacaatttcttaggtgcttttcgtatggttctt 3607854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 5189471 - 5189515
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  5189471 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 5189515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 9978221 - 9978177
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  9978221 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 9978177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 15324628 - 15324672
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  15324628 agaaaacttaggtacaatttcttaggtgcttttcgtatggttctt 15324672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 19797150 - 19797106
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  19797150 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 19797106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 19955080 - 19955036
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  19955080 agaaaacttaggtacaattccttaggtactttttgtatggttctt 19955036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 23698504 - 23698568
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||| | ||||| ||||||||||| | ||||||||| |||||||    
T  23698504 agaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgattt 23698568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 48954216 - 48954280
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||| | ||||||||| |||||||    
T  48954216 agaaaacttaggtacaattccttaggtacttttcatatggttcttaactaaattcactatgattt 48954280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 49285144 - 49285100
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  49285144 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 49285100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 51276864 - 51276820
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  51276864 agaaaacttaggtacaatttcttaggtgcttttcgtatggttctt 51276820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 21930547 - 21930488
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccat 230  Q
    |||||| |||||||||||| |||||||| |||| ||||||||||| | ||||||||||||    
T  21930547 agaaaatttaggtacaattacttaggtgtttttcgtatggttcttaactaaattcaccat 21930488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 27928302 - 27928356
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcac 227  Q
    ||||||||| |||||||| ||| |||||||||||||||||||| | |||||||||    
T  27928302 aaaacttagatacaattccttatgtgctttttgtatggttcttaactaaattcac 27928356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 15324797 - 15324732
Alignment:
Q  171 tagaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||| ||| ||||||||| ||| |||||||| ||||||||||| | ||||||||| |||||||    
T  15324797 tagaaaatttatgtacaattccttatgtgcttttcgtatggttcttaactaaattcactatgattt 15324732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 19796983 - 19797024
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggtt 212  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  19796983 agaaaacttaggtacaatttcttaggtgcttttcgtatggtt 19797024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 1387947 - 1387903
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||    
T  1387947 agaaaatttaggtacaattccttaggtgcttttcgtatggttctt 1387903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 2854701 - 2854657
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  2854701 agaaaacttaggtacaattccttaggtccttttcgtatggttctt 2854657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 4299564 - 4299520
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  4299564 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 4299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 9978053 - 9978117
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| |||||||||||| |||| |||||||| ||||| ||||| | ||||||||| |||||||    
T  9978053 agaaaatttaggtacaattccttatgtgcttttcgtatgattcttaactaaattcactatgattt 9978117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 14387184 - 14387140
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  14387184 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 14387140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 23698671 - 23698627
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  23698671 agaaaacttaggtacaattccttaggtccttttcgtatggttctt 23698627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 25298016 - 25297972
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  25298016 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 25297972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 26208594 - 26208530
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||| ||| ||||| |||||||||||| ||||||||||  | |||||||||||| ||||    
T  26208594 agaaaacttatgtataattccttaggtgcttttcgtatggttctgaactaaattcaccataattt 26208530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 27241093 - 27241049
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  27241093 agaaaacttaggtacaattcgttaggtgctttgcgtatggttctt 27241049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 27926253 - 27926309
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcac 227  Q
    |||||||||||||| ||||| ||| |||||||| ||||||||||| | |||||||||    
T  27926253 agaaaacttaggtataattccttatgtgcttttcgtatggttcttaactaaattcac 27926309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 27926421 - 27926377
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||    
T  27926421 agaaaacttatgtacaattccttaggtgcttttcgtatggttctt 27926377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 36880680 - 36880636
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  36880680 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 36880636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 47940740 - 47940696
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  47940740 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 47940696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 48954383 - 48954339
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  48954383 agaaaacttaggtacaattccttaggtccttttcgtatggttctt 48954339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 50627133 - 50627177
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  50627133 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 50627177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 4239020 - 4238956
Alignment:
Q  175 aaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||||||    
T  4239020 aaacttaggtacaattccttctgtgctttttgtatggttcttaattaaattcaccatgattttct 4238956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 14393733 - 14393669
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  14393733 agaaaacttaggtataattccttaggtgctttttgtatggttcttaactaaattcaccatgattt 14393669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 15546801 - 15546737
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||    
T  15546801 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaattaaatttaccatgattt 15546737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21379943 - 21380007
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  21379943 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 21380007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 8091231 - 8091167
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||| ||||||    
T  8091231 agaaaacttaggtacaattgcttaggtgcttttcgtatggttcttaactaaattcaccgtgattt 8091167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 885387 - 885431
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  885387 agaaaacttaggtacaattccttaggtgctttttgtatggttctt 885431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 4890482 - 4890546
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||| | |||||| ||||||||||    
T  4890482 agaaaacttaggtacaatttcttaggtgtttttcgtatggttcttaactaaatttaccatgattt 4890546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 885554 - 885487
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| ||||||||||||  |||| ||||| | |||||||| |||||||||||    
T  885554 agaaaacttaggtacaattccttaggtgcttttcctatgattcttaactaaattcatcatgattttct 885487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 7808778 - 7808734
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  7808778 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 7808734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 13439865 - 13439801
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| |  ||||| |||| ||||||||||| | |||||||||||||||||    
T  13439865 agaaaacttaggtacaattacgcaggtgtttttcgtatggttcttaactaaattcaccatgattt 13439801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 21380110 - 21380066
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  21380110 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 21380066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 6433692 - 6433747
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattca 226  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||| | ||||||||    
T  6433692 agaaaacttaggtataatttcttaggtgcttttcgtatggttcttaactaaattca 6433747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 3369147 - 3369090
Alignment:
Q  179 ttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||| |||||||||||| |||| |||| | | |||||||||||||||||    
T  3369147 ttaggtacaattcgttaggtgcttttcgtatcgttcctaactaaattcaccatgattt 3369090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 6433807 - 6433762
Alignment:
Q  190 tcttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||| ||||||||||| | ||||||||| |||||||    
T  6433807 tcttaggtgcttttcgtatggttcttaactaaattcactatgattt 6433762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 4890650 - 4890606
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||    
T  4890650 agaaaatttaggtacaattccttaggtgcttttcgtatggttctt 4890606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 11687145 - 11687189
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  11687145 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 11687189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 11687312 - 11687268
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  11687312 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 11687268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 15546634 - 15546678
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||    
T  15546634 agaaaacttaggtacaattccttagttgttttttgtatggttctt 15546678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 18998119 - 18998182
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| |||||||| |||| |||  |||||| | |||||||||||||||||    
T  18998119 agaaaacttaggtacaattccttaggtgtttttcgta-cgttcttaactaaattcaccatgattt 18998182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 18998287 - 18998235
Alignment:
Q  171 tagaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaa 222  Q
    ||||||| |||| |||||||| |||||||||||| ||||||||||| ||||||    
T  18998287 tagaaaatttagctacaattccttaggtgcttttcgtatggttcttaattaaa 18998235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 57)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 4072275 - 4072339
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||||    
T  4072275 agaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcaccatgattt 4072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 12789775 - 12789711
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  12789775 agaaaactttggtagaattccttaggtgctttttgtatggttcttaattaaattcaccatgattt 12789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 13723990 - 13724053
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  13723990 agaaaacttaggtacaatttcttaggtgctttttgtatggttctt-actaaattcaccatgattt 13724053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21969159 - 21969223
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  21969159 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 21969223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21991595 - 21991659
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  21991595 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 21991659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 45487968 - 45487904
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  45487968 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 45487904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 3970493 - 3970557
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  3970493 agaaaacttaggtgcaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 3970557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 8831910 - 8831846
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| || |||||||||| ||||||||||| | |||||||||||||||||    
T  8831910 agaaaacttaggtacaattttttaggtgcttttcgtatggttcttaactaaattcaccatgattt 8831846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 13078165 - 13078229
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  13078165 agaaaacttaggtgcaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 13078229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 22176278 - 22176214
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||| |||||||    
T  22176278 agaaaacttaggtacaattccttatgtgctttttgtatggttcttaactaaattcactatgattt 22176214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 50099603 - 50099539
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||| ||||    
T  50099603 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccataattt 50099539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 10254738 - 10254671
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||| | |||||||| |||||||||||    
T  10254738 agaaaatttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcatcatgattttct 10254671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 32237396 - 32237463
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| | |||||| |||||||||||||    
T  32237396 agaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaatttaccatgattttct 32237463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 25446418 - 25446355
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  25446418 agaaaacttag-tacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 25446355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 25488510 - 25488466
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  25488510 agaaaacttaggtacaattccttaggtgctttttgtatggttctt 25488466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 25561013 - 25561057
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  25561013 agaaaacttaggtacaattccttaggtgctttttgtatggttctt 25561057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 26976844 - 26976911
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||| |||||||| |  ||||||||||    
T  26976844 agaaaacttaggtacaatttcttaggtgcttttcgtatagttcttaattaaatttagtatgattttct 26976911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 32237563 - 32237512
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaa 222  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  32237563 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaattaaa 32237512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 35368902 - 35368835
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||||| |||| ||| |||| |||||||| || | ||||||||||||||||||||    
T  35368902 agaaaacttaggtacaatttcttatgtgtttttcgtatggtttttaactaaattcaccatgattttct 35368835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 1476555 - 1476617
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||| |||||||||||| ||||||||||    |||||||||||||||||    
T  1476555 aaaacttaggtacaattccttaggtgcttttggtatggttctaacctaaattcaccatgattt 1476617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 5529893 - 5529937
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  5529893 agaaaacttaggtacaatttcttaggtgcttttcgtatggttctt 5529937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 12838079 - 12838123
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  12838079 agaaaacttatgtacaattccttaggtgctttttgtatggttctt 12838123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 12838246 - 12838182
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||| ||||||||||| ||||| |||| |||||||| || | |||||||||||||||||    
T  12838246 agaaaacttatgtacaattctttaggtgtttttcgtatggtttttaactaaattcaccatgattt 12838182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 21969326 - 21969282
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  21969326 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 21969282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 21991762 - 21991718
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  21991762 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 21991718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 22101334 - 22101270
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| | |||||| ||||||||||| | ||||||||| |||||||    
T  22101334 agaaaacttaggtacaattccttatgagcttttcgtatggttcttaactaaattcactatgattt 22101270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 25488343 - 25488407
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||| |||| ||||||||| |||||||||||| |||| |||||| | |||||||||||||||||    
T  25488343 agaaatcttaagtacaattccttaggtgcttttcgtatagttcttaactaaattcaccatgattt 25488407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 25561180 - 25561116
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||| |||| ||||||||| |||||||||||| |||| |||||| | |||||||||||||||||    
T  25561180 agaaatcttaagtacaattccttaggtgcttttcgtatagttcttaactaaattcaccatgattt 25561116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 26906623 - 26906559
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||| | ||||| ||||||||||| | ||||||||| |||||||    
T  26906623 agaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgattt 26906559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 36278758 - 36278822
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||| | ||||| ||||||||||| | ||||||||| |||||||    
T  36278758 agaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgattt 36278822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 44611384 - 44611447
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||| |||||||| |||||| |||||||||| |||||| | |||||||||||||||||    
T  44611384 agaaaacttag-tacaattccttaggtactttttgtatagttcttaactaaattcaccatgattt 44611447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 45487801 - 45487845
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  45487801 agaaaacttaggtacaattccttaggtgcttttcgtatggttctt 45487845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 45712905 - 45712969
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||||||||||||| | |  ||||| | |||||||||||||||||    
T  45712905 agaaaacttaggtacaattccttaggtgctttttttttttttcttaactaaattcaccatgattt 45712969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 10117680 - 10117625
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattca 226  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||| | ||||||||    
T  10117680 agaaaatttaggtacaattccttaggtgcttttcgtatggttcttaactaaattca 10117625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 45713071 - 45713029
Alignment:
Q  173 gaaaacttaggtacaattc-ttaggtgctttttgtatggttct 214  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  45713071 gaaaacttaggtacaattccttaggtgcttttcgtatggttct 45713029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 8831744 - 8831785
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttct 214  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  8831744 aaaacttaggtacaattccttaggtgcttttcgtatggttct 8831785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 42105387 - 42105452
Alignment:
Q  174 aaaacttaggtacaa-ttcttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||| ||| ||||| |||||  |||||||||| | |||||||||| |||||||||    
T  42105387 aaaacttaggtacaatttcataggtacttttcttatggttcttaactaaattcaccgtgattttct 42105452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 46222048 - 46222097
Alignment:
Q  189 ttcttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||| |||| |||||||| || | ||||||||||||||||||||    
T  46222048 ttcttaggtgtttttcgtatggtttttaactaaattcaccatgattttct 46222097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 404213 - 404150
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||| |||||||||| || ||||||  ||||||||||| | |||||||||||||||||    
T  404213 agaaaacttag-tacaattctttagatgctttccgtatggttcttaactaaattcaccatgattt 404150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 3970660 - 3970616
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  3970660 agaaaacttaggtacaatttcttaggtacttttcgtatggttctt 3970616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 4072443 - 4072399
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  4072443 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 4072399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 10017116 - 10017160
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||    
T  10017116 agaaaacttaggtacaattccttaggtgcttttcatatggttctt 10017160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 10017278 - 10017234
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||    
T  10017278 agaaaatttaggtacaattccttaggtgcttttcgtatggttctt 10017234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 10254570 - 10254614
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||    
T  10254570 agaaaacttaggtacaattccttaggtgcttttcatatggttctt 10254614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 10441427 - 10441383
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||    
T  10441427 agaaaacttaggtacaattccttaggtgcttttggtacggttctt 10441383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 12789608 - 12789652
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  12789608 agaaaacttaggtacaattccttaggtgtttttcgtatggttctt 12789652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 26906456 - 26906500
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  26906456 agaaaacttaggtacaattccttaggtccttttcgtatggttctt 26906500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 35368551 - 35368595
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||    
T  35368551 agaaaacttaggtacaattccttatgtgcttttcgtatggttctt 35368595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 36278925 - 36278881
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  36278925 agaaaacttaggtacaattccttaggtccttttcgtatggttctt 36278881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 36657435 - 36657479
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  36657435 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 36657479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 36657602 - 36657558
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  36657602 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 36657558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 36822762 - 36822806
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  36822762 agaaaacttaggtacaattccttagctgcttttcgtatggttctt 36822806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 36822929 - 36822885
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| || |||||||||| |||||||||||    
T  36822929 agaaaacttaggtacaattttttaggtgcttttcgtatggttctt 36822885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 38125348 - 38125304
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||    
T  38125348 agaaaacttaggtacaattcattaggtgtttttcgtatggttctt 38125304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 39850514 - 39850470
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||    
T  39850514 agaaaacttaggtacaattccttaggtgcttttcgtatgattctt 39850470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 43639083 - 43639147
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||| || ||||| |||||||||||| ||||| ||||| |  ||||||||||||||||    
T  43639083 agaaaacttagttataattccttaggtgcttttcgtatgattcttaaccaaattcaccatgattt 43639147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 43639251 - 43639207
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||    
T  43639251 agaaaacttaggtacaattccttaggtgcttttcgtatgattctt 43639207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 46003 - 45936
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| ||||||||||||  |||||||||| | ||||||||||||||||||||    
T  46003 agaaaacttaggtacaattccttaggtgcttttcttatggttcttaactaaattcaccatgattttct 45936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 45836 - 45880
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  45836 agaaaacttaggtacaattccttaggtgctttttgtatggttctt 45880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 5876 - 5810
Alignment:
Q  172 agaaaacttaggtacaatt---cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||   ||||||||||||| ||||||||||| | |||||||||||||||||    
T  5876 agaaaacttaggtacaattttccttaggtgcttttcgtatggttcttaactaaattcaccatgattt 5810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 5703 - 5747
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttctt 215  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||    
T  5703 agaaaactaaggtacaattctttaggtgcttttcgtatggttctt 5747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 20476600 - 20476536
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| | |||||||| ||||||||    
T  20476600 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcatcatgattt 20476536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 33629347 - 33629414
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||| | ||||||||| ||||||||||    
T  33629347 agaaaacttaggtacaattccttatgtgcttttggtatggttcttaactaaattcactatgattttct 33629414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21259732 - 21259796
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||| ||||||||||| | |||||||| |||||||||||  ||||||||||||||||||    
T  21259732 agaaaacttacgtacaattctttatgtgcttttcgtatggttcttagttaaattcaccatgattt 21259796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 12744994 - 12744931
Alignment:
Q  173 gaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||| |||| ||||| || |||| |||||||||||||||||    
T  12744994 gaaaacttaggtacaattccttaggtgtttttcgtatgatttttgactaaattcaccatgattt 12744931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 12808079 - 12808016
Alignment:
Q  173 gaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||||||||||    
T  12808079 gaaaacttaggtacaattccttaagtgtttttcgtatgattcttgactaaattcaccatgattt 12808016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 8364797 - 8364755
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  8364797 aaaacttaggtacaattccttaggtgctttttgtatggttctt 8364755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 19976429 - 19976367
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||| ||||||||||||| |||||||||||| |||| ||| ||||||||||| ||||||||||    
T  19976429 aaaatttaggtacaattccttaggtgcttttcgtatagttattgattaaatttaccatgattt 19976367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 32623219 - 32623281
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||| ||||||| |||| ||||||||||| | ||||||||| |||||||    
T  32623219 aaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaattcactatgattt 32623281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 24397416 - 24397371
Alignment:
Q  171 tagaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||    
T  24397416 tagaaaacttaggtacaattccttaggtgcttttcgtatggttctt 24397371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 37552310 - 37552371
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatga 232  Q
    |||||||||||||||||||| ||  |||||||||||| ||||||| | ||||||||||||||    
T  37552310 agaaaacttaggtacaattcattccgtgctttttgtacggttcttaactaaattcaccatga 37552371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 780959 - 780911
Alignment:
Q  174 aaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaa 221  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  780959 aaaacttaggtacaatttcttaggtgcttttcgtatggttcttaattaa 780911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 2268774 - 2268718
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcac 227  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||| | |||||||||    
T  2268774 agaaaacttaggtataatttcttagatgctttttgtatggttcttaactaaattcac 2268718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 4266151 - 4266087
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||| |||||||||| ||||||| |||| ||||||||||| | |||||||||| ||||||    
T  4266151 agaaaacttcggtacaattccttaggtgtttttcgtatggttcttaactaaattcaccgtgattt 4266087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21591215 - 21591279
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| |||||||| |||||||| |  | |||||||||||||||||    
T  21591215 agaaaacttaggtacaattccttaagtgcttttcgtatggttgtgaactaaattcaccatgattt 21591279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 21595332 - 21595396
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||||||||||||||||| ||| |||||||| |||||||| |  | |||||||||||||||||    
T  21595332 agaaaacttaggtacaattccttaagtgcttttcgtatggttgtgaactaaattcaccatgattt 21595396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 1138728 - 1138661
Alignment:
Q  172 agaaaacttaggtacaattct-taggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||| | ||||||||  ||||||||||    
T  1138728 agaaaacttaggtacaattccatagctgcttttcgtatggttcttaactaaattcattatgattttct 1138661  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 4913316 - 4913258
Alignment:
Q  174 aaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatg 231  Q
    |||||||| |||||||| |||||||| |||||||||||||||| | |||||||| ||||    
T  4913316 aaaacttacgtacaatttcttaggtgttttttgtatggttcttaactaaattcatcatg 4913258  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 10132421 - 10132359
Alignment:
Q  174 aaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||| |||||||| ||| ||| |||||||||||||||| | ||||||||||| |||||    
T  10132421 aaaacttagatacaattccttatgtgttttttgtatggttcttaactaaattcaccacgattt 10132359  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 17583408 - 17583367
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggtt 212  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  17583408 agaaaacttaggtacaatttcttaggtgcttttcgtatggtt 17583367  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 780796 - 780860
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| ||||||| ||||| |||| | ||||| |||||  ||||||||||||||||||||||||    
T  780796 agaaaagttaggtagaattccttagattcttttcgtatgactcttgattaaattcaccatgattt 780860  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 1138561 - 1138605
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| || ||||||||| |||||||||||    
T  1138561 agaaaacttaggtacaattcttttggtgcttttcgtatggttctt 1138605  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 2255631 - 2255587
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| |||||||||||| || ||||||||    
T  2255631 agaaaacttaggtacaattctttaggtgcttttcgtgtggttctt 2255587  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 4265984 - 4266028
Alignment:
Q  172 agaaaacttaggtacaa-ttcttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||    
T  4265984 agaaaacttaggtacaatttcttaggtgtttttcgtatggttctt 4266028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 13754293 - 13754357
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| |||| ||| |||| ||||| ||||| | |||||||||||| ||||    
T  13754293 agaaaacttaggtacaattccttatgtgtttttcgtatgattcttaactaaattcaccataattt 13754357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 15855845 - 15855889
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  15855845 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 15855889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 15856012 - 15855968
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  15856012 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 15855968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 16473124 - 16473080
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  16473124 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 16473080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 20476433 - 20476477
Alignment:
Q  172 agaaaacttaggtacaattct-taggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||    
T  20476433 agaaaacttaggtacaattctctagatgcttttcgtatggttctt 20476477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 35420614 - 35420658
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  35420614 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 35420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 35420781 - 35420737
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  35420781 agaaaacttaggtacaattccttagatgcttttcgtatggttctt 35420737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 1941 - 2005
Alignment:
Q  172 agaaaacttaggtacaattctt-aggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| ||||||| |||| || |||||||||||||||||||||| | |||||||||||||||||    
T  1941 agaaaatttaggtataattgtttaggtgctttttgtatggttcttaactaaattcaccatgattt 2005  T

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Target: scaffold0163; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 2109 - 2065
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttctt 215  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  2109 agaaaacttaggtacaattccttaggtgctttttatatggttctt 2065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 48295 - 48228
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    ||||||||||| |||||||| |||| ||||||| |||| |||||| | ||||||||||||||||||||    
T  48295 agaaaacttagatacaattccttagatgcttttcgtatagttcttaactaaattcaccatgattttct 48228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 7255 - 7191
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    |||||| |||||||| |||| |||||||||||| ||||||||||| | |||||||| ||||||||    
T  7255 agaaaatttaggtacgattccttaggtgcttttcgtatggttcttaactaaattcatcatgattt 7191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 51232 - 51168
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattt 235  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||| | ||||||||| |||||||    
T  51232 agaaaacttaggtacaattccttaggtacttttcatatggttcttaactaaattcactatgattt 51168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 51065 - 51109
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttctt 215  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  51065 agaaaacttaggtacaattccttaggtccttttcgtatggttctt 51109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 10284 - 10217
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||| |||||||||||| |||| |||||||| ||||  ||||| | ||||||||||||||||||||    
T  10284 agaaaatttaggtacaatttcttatgtgcttttcgtataattcttaagtaaattcaccatgattttct 10217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 14611 - 14552
Alignment:
Q  172 agaaaacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccat 230  Q
    |||||||||||||||||||| || ||||||||| |||| |||||| | ||||||||||||    
T  14611 agaaaacttaggtacaattccttgggtgcttttcgtatcgttcttaactaaattcaccat 14552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 72294 - 72357
Alignment:
Q  176 aacttaggtacaattc-ttaggtgctttttgtatggttcttgattaaattcaccatgattttct 238  Q
    |||||||||||||||| |||| ||||||||||||| |||||   |||||||||||| |||||||    
T  72294 aacttaggtacaattccttagatgctttttgtatgattcttagctaaattcaccataattttct 72357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 26407 - 26448
Alignment:
Q  172 agaaaacttaggtacaatt-cttaggtgctttttgtatggtt 212  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  26407 agaaaacttaggtacaattccttaggtgcttttcgtatggtt 26448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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