View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13244_low_3 (Length: 910)
Name: NF13244_low_3
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 220 - 738
Target Start/End: Original strand, 52411825 - 52412346
Alignment:
| Q |
220 |
gtgtacaaaagaataataaagtttcaaatttggcatgcttacaccttgaaacttttgtatagtcccaaattaaccaatgtggctgtcaaattaaaagttt |
319 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | | | |||||||| | || |||||||||| ||||||| |
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| T |
52411825 |
gtgtacagaagaataataaagtttcaaatttggcatgcttacaccttgaactttttgcgtaatgcaatattaaccattttgactgtcaaatttaaagttt |
52411924 |
T |
|
| Q |
320 |
tcattaagcaaatcaaagttacataatataagctgagacaaaacacacaatgcataagactccaaaatcttgtctgtcaccattatcactcaccaaaacc |
419 |
Q |
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||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||| |
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| T |
52411925 |
tcattaagcaaatcaaagtcacataatataagctcagaccaaacacacaatgcataacac--caaaattctgtcagtcaccattatcactcaccaaaacc |
52412022 |
T |
|
| Q |
420 |
tgaagaaaagcacaccaatttctctttacaatgtttttctgttgcagttaagttttatgcagtgattcaagaatagcagaaaaatttgcagtcaagaata |
519 |
Q |
| |
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||||||||| |||||||||||||||| ||| ||||||| |||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
52412023 |
tgaagaaaatcacaccaatttctcttcacagtgtttttttgttgctgttaagttttatgaagtgattgaagaacagcagaaaaatttgcagtcaagaata |
52412122 |
T |
|
| Q |
520 |
agagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataatacaaaactagctctaactgaa |
619 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||||| | || ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
52412123 |
agaatgaattgtatagcagaataacttttttattctcatttcatataatattggacaatacaattgatttgatgctaatacaaaactaactctaactgaa |
52412222 |
T |
|
| Q |
620 |
aattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaa-----gcatctcattcttcttggcataaat |
714 |
Q |
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| T |
52412223 |
aattacaatgagaacattcaaactacgccatttagaaataaaaacaatgagtaatccctgtaattgctaaagatctcatttcattcttcttgctataaat |
52412322 |
T |
|
| Q |
715 |
tacttcctcttccgctatcacatc |
738 |
Q |
| |
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| |||||||||||| ||||||||| |
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| T |
52412323 |
ttcttcctcttccgatatcacatc |
52412346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 739 - 893
Target Start/End: Original strand, 45200920 - 45201074
Alignment:
| Q |
739 |
cttcctttcacactcactgtccttctcattgcaaaagcatccataattcaagctcttaaactcaatcacaataaaccatctttgccaccttcgttctctt |
838 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
45200920 |
cttcctttcacactaactgtccttctgattgcaaaagcatccataattcatgcacttaaactcaatcacaataaaccatctttgccgccttcattctctt |
45201019 |
T |
|
| Q |
839 |
tgataatagcactttacaagcaactctttcacacctatatctgcaactgtttctt |
893 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
45201020 |
cgataatagcactttacaagccactctttcatacctatatctgcaactgtttctt |
45201074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 500 - 727
Target Start/End: Complemental strand, 40393408 - 40393180
Alignment:
| Q |
500 |
aaaatttgcagtcaagaataagagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataata |
599 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||| || ||||||||| |||||| |||||| || || ||||||||| ||||||||||||||||||||| |
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| T |
40393408 |
aaaatttgcagtcaaggataagaatggattgtatatcaaaagaactttgttattcccattgcatataacattggataggacaattgatttgatgataata |
40393309 |
T |
|
| Q |
600 |
caaaactagctctaactgaaaattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctca-- |
697 |
Q |
| |
|
|||||||| | |||| |||||||||||| ||| |||||||||||| | ||||||||||| |||||||| || |||| ||| |||||||||||||| |
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| T |
40393308 |
caaaactaaccttaacagaaaattacaatgagaccattcaaactacacaatttagaaata---acaatgagcaacccctatagctgctaagcatctcata |
40393212 |
T |
|
| Q |
698 |
--ttcttcttggcataaattacttcctcttcc |
727 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |
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|
| T |
40393211 |
tgttcttcttgccagaaatttcttcctcttcc |
40393180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 594 - 698
Target Start/End: Complemental strand, 40381084 - 40380980
Alignment:
| Q |
594 |
ataatacaaaactagctctaactgaaaattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcat |
693 |
Q |
| |
|
||||||||||| || | ||||||||||||||||| ||| | ||||||| || |||||| |||||||||||||||| || |||| || |||||||||| |
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| T |
40381084 |
ataatacaaaagtaaccttaactgaaaattacaatgagatcgttcaaaccacctcatttaaaaataacaacaatgagcaacccctacagctgctaagcat |
40380985 |
T |
|
| Q |
694 |
ctcat |
698 |
Q |
| |
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||||| |
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|
| T |
40380984 |
ctcat |
40380980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 419 - 738
Target Start/End: Complemental strand, 7773808 - 7773485
Alignment:
| Q |
419 |
ctgaagaaaagcacaccaatttctctttacaatgtttttctgttgcagttaagttttatgcagtgattcaagaatagcagaaaaatttgcagtcaagaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7773808 |
ctgaagaaaagcacaccaatttctctttacaatgttttttagttgctgttaagttttatgcagtgattcaagaatagcagaaaaatttgcagtcaagaat |
7773709 |
T |
|
| Q |
519 |
aagagtgaattgtatagcagaagaac----ttttttattctcattgcgtacaatattggatagtacaattgatttgatgataatacaaaactagctctaa |
614 |
Q |
| |
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|||| |||||||||||| ||||||| |||||||||| |||| | || ||||||| |||||||| || ||||||||||| |||||||||| |||||| |
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| T |
7773708 |
aagaatgaattgtatagtagaagaagaaatttttttattcccatttcatataatattgcatagtacatttaatttgatgatactacaaaactaactctaa |
7773609 |
T |
|
| Q |
615 |
ctgaaaattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctcattcttcttggcataaat |
714 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| || || ||||| |
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| T |
7773608 |
ttgaaaattacaatgagaacattcaaactacgccatttagaaataacaacaatgagtgatcattgtagttgctaagcatctaattctttttcgcgtaaat |
7773509 |
T |
|
| Q |
715 |
tacttcctcttccgctatcacatc |
738 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
7773508 |
ttcttcctcttccgctatcacatc |
7773485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 739 - 888
Target Start/End: Complemental strand, 7773181 - 7773035
Alignment:
| Q |
739 |
cttcctttcacactcactgtccttctcattgcaaaagcatccataattcaagctcttaaactcaatcacaataaaccatctttgccaccttcgttctctt |
838 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
7773181 |
cttcctttcacactcaatgtctt---cattgcaaaagcatccataattcaagcttttaaactaaatcacaataaaccatctttgtcaccttcattctctt |
7773085 |
T |
|
| Q |
839 |
tgataatagcactttacaagcaactctttcacacctatatctgcaactgt |
888 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
7773084 |
tgataaaagcactttacaagccactctttcatacctatatctgcatctgt |
7773035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 512 - 628
Target Start/End: Original strand, 14676938 - 14677054
Alignment:
| Q |
512 |
caagaataagagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataatacaaaactagctc |
611 |
Q |
| |
|
|||||||||| ||| | |||||| || |||||||| |||||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
14676938 |
caagaataagtgtggactgtatatcaagagaactttattattcccattgcatataatattggatagtacaattgatttgttgataatacaaaactagctc |
14677037 |
T |
|
| Q |
612 |
taactgaaaattacaat |
628 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14677038 |
taactgaaaattacaat |
14677054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 620 - 746
Target Start/End: Original strand, 14684711 - 14684836
Alignment:
| Q |
620 |
aattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctcat-tcttcttggcataaattact |
718 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||||||||| ||||| |||||| || |||| || |||||||||||||||| | ||||| ||| ||||| || |
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|
| T |
14684711 |
aattacaattagaacattcaaattacac-atttagaaacaacaaaaatgagcaacccctataattgctaagcatctcatatgttctt-gcagaaatttct |
14684808 |
T |
|
| Q |
719 |
tcctcttccgctatcacatccttccttt |
746 |
Q |
| |
|
| |||||| ||||||||| ||| |||| |
|
|
| T |
14684809 |
tactcttcaactatcacatgctttcttt |
14684836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 540 - 628
Target Start/End: Complemental strand, 17667411 - 17667323
Alignment:
| Q |
540 |
agaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataatacaaaactagctctaactgaaaattacaat |
628 |
Q |
| |
|
|||||||| |||||| |||||| || |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
17667411 |
agaactttattattcccattgcatataatattggatagtataattgatttgttgatattacaaaactagctctaactgaaaattacaat |
17667323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 620 - 746
Target Start/End: Complemental strand, 17663410 - 17663285
Alignment:
| Q |
620 |
aattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctcat-tcttcttggcataaattact |
718 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||||||||| ||||| |||||| || |||| || |||||||||||||||| | ||||| ||| ||||| || |
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|
| T |
17663410 |
aattacaattagaacattcaaattacac-atttagaaacaacaaaaatgagcaacccctataattgctaagcatctcatatgttctt-gcagaaatttct |
17663313 |
T |
|
| Q |
719 |
tcctcttccgctatcacatccttccttt |
746 |
Q |
| |
|
| |||||| ||||||||| ||| |||| |
|
|
| T |
17663312 |
tactcttctactatcacatgctttcttt |
17663285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 698
Target Start/End: Original strand, 20229126 - 20229203
Alignment:
| Q |
620 |
aattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctcat |
698 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||| | || || |||| ||||||||||||||||||| |
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|
| T |
20229126 |
aattacaattagaacattcaaactac-acatttagaaataacaattgtaagcaacccctatagttgctaagcatctcat |
20229203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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