View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_4 (Length: 712)
Name: NF13244_low_4
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_4 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 13 - 663
Target Start/End: Original strand, 36733674 - 36734324
Alignment:
| Q |
13 |
tggacatcatcaccttattggttcaatacctcaccaaggacttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
112 |
Q |
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| T |
36733674 |
tggacatcttcaccttattggttcaatacctcaccaaggacttcacaaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
36733773 |
T |
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| Q |
113 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
212 |
Q |
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| T |
36733774 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
36733873 |
T |
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| Q |
213 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
312 |
Q |
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| T |
36733874 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
36733973 |
T |
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| Q |
313 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
412 |
Q |
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| T |
36733974 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagctt |
36734073 |
T |
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| Q |
413 |
ttgaagttgtcgaataacgttatttcgaggatgattatgagccaaacttgtagtgaaaatgatggtgaagctgaagaggtgaggaagttggtgcaagaca |
512 |
Q |
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| T |
36734074 |
ttgaagttgtcgaataacgttatttcaaggatgattatgagccaaacttgtagtgaaaatgatggtgaagctgaagaggtgaggaagttggtgcaagaca |
36734173 |
T |
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| Q |
513 |
ctgtacatcttacggggaagtttaatatttctgattttatttggttttttaagaactgggatgtccaggggtttagcaaagggttaaaggaaattaggga |
612 |
Q |
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| T |
36734174 |
ctgtacatcttacggggaagtttaatatttctgattttatttggttttttaagaactgggatgtccaggggtttagcaaagggttagaggaaattaggga |
36734273 |
T |
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| Q |
613 |
caggtttgattctatgatggagaggattatcaaggagcatcaagaagtaag |
663 |
Q |
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| T |
36734274 |
caggtttgattctatgatggagaggattatcaaggagcatcaagaagtaag |
36734324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 25168110 - 25168224
Alignment:
| Q |
54 |
ttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttct |
153 |
Q |
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| T |
25168110 |
ttcataagctttcaattcaatatggacccataattcaacttttcctaggctctataccttgtatagtaacttcaaatccagaaatagccaaagagtttct |
25168209 |
T |
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| Q |
154 |
taaaactcacgaaac |
168 |
Q |
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| T |
25168210 |
taaaactcacgaaac |
25168224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 574
Target Start/End: Original strand, 18973 - 19053
Alignment:
| Q |
494 |
aggaagttggtgcaagacactgtacatcttacggggaagtttaatatttctgattttatttggttttttaagaactgggat |
574 |
Q |
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| T |
18973 |
aggaagatggtgcaagatagtgtagagctttcagggaggtttaatttgtcggattttatttggttttttaagaattgggat |
19053 |
T |
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