View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_5 (Length: 548)
Name: NF13244_low_5
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 5 - 532
Target Start/End: Original strand, 6593447 - 6593974
Alignment:
| Q |
5 |
agtagttgatagtttccatagtagtcttaagaatgaatctaaacttggagcacttataagagaatgtagaaattcactcccgtcttttttcaaaaacttt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593447 |
agtagttgatagtttccatagtagtcttaagaatgaatctaaacttggagcacttataagagaatgtagaaattcactcccgtcttttttcaaaaacttt |
6593546 |
T |
|
| Q |
105 |
caggtttgaatttattatgatacaaacaaatgaggttcatagcttgctagagtggccacatctcaacctggtttccatttgttcattgatatgcctgatt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
6593547 |
caggtttgaatttattatgatacaaacaaatgaggttcatggcttgctagagtggccacatctcaacctagttttcatttgttcattgatatgcctgatt |
6593646 |
T |
|
| Q |
205 |
gtatctaaactattattgcttaatgaaatgagatagttatttattgtnnnnnnnnnnngaaccataaaaaattataccaaattaccaattgttcaataat |
304 |
Q |
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| T |
6593647 |
gtatctaaactattattgcttaatgaaatgagatagttatttattgtaaaaaaaaaaagaaccataaaaaattataccaaattaccaattgttcaataat |
6593746 |
T |
|
| Q |
305 |
aaagatttgtcaaaaatccctctgttgtggcaaaaacaacctctcaattggaaaccctatatgaaatggnnnnnnnaactgacaaaggacccaaactggt |
404 |
Q |
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| T |
6593747 |
aaagatttgtcaaaaatccctttgttgtggcaaaaacaacctctcaattggaaaccctatatgaaatggtttttttaactgacaaaggacccaaactggt |
6593846 |
T |
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| Q |
405 |
ttcctgttgcagaaggtatatgtctatcaaaaccttacatgaatttcgagtatgatcattccaattgagagaaatacaaagattgaaaaaattagggttg |
504 |
Q |
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| T |
6593847 |
ttcctgttgcagaaggtatatgtctatgaaaaccttacatgaatttcgagtatgatccttccaattgagagaaatacaaagattgaaaaaattagggttg |
6593946 |
T |
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| Q |
505 |
aatatttgataaaaacgcacgagtatac |
532 |
Q |
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| T |
6593947 |
aatatttgataaaaaagcacgagtatac |
6593974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 10981115 - 10980867
Alignment:
| Q |
5 |
agtagttgatagtttccatagtagtcttaagaatgaatctaaacttggagcacttataagagaatgtagaaattcactcccgtcttttttcaaaaacttt |
104 |
Q |
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|||||||||||||||||||| | || ||| |||||||| | |||||||| |||| ||||| |||||||||||| || | |||||||||| ||||| |
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| T |
10981115 |
agtagttgatagtttccataacaatcgtaaagatgaatctgattttggagcaattattagagagtgtagaaattcattctcatcttttttcacaaactcg |
10981016 |
T |
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| Q |
105 |
caggtttgaatttattatgatacaaacaaatgaggtt---catag-cttgctagagtggccacatctcaacctggtttccatttgttcattgatatgcct |
200 |
Q |
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| T |
10981015 |
caggtt-gagtttattaggagacaaacaaataaggttgctcatagtcttgctagggcggccacatcgttatctagtttccatttgtttactgagatgcct |
10980917 |
T |
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| Q |
201 |
gattgtatctaaactattattgcttaatgaaatgagatagttatttattgt |
251 |
Q |
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| T |
10980916 |
gattgtattgaacctattattgc-taatgaaatgatatagttatttattgt |
10980867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 6904580 - 6904680
Alignment:
| Q |
147 |
cttgctagagtggccacatctcaacctggtttccatttgttcattgatatgcctgattgtatctaaactattattgcttaatgaaatgagatagttattt |
246 |
Q |
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||||||| ||||| ||||||| |||| |||||| |||||||||| ||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
6904580 |
cttgctatggtggctacatctctacctagtttccgtttgttcatttatatgcccgattgtatccaaactattattgc-taatcaaatgagatagttattt |
6904678 |
T |
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| Q |
247 |
at |
248 |
Q |
| |
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|| |
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| T |
6904679 |
at |
6904680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 23223054 - 23223136
Alignment:
| Q |
158 |
ggccacatctcaacctggtttccatttgttcattgatatgcctgattgtatctaaactattattgcttaatgaaatgagatagtt |
242 |
Q |
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| T |
23223054 |
ggccacatctttacctagtttccatt-gtttattgagatgcctgattgtatcgaaaatcttattg-ataatgaaatgagatagtt |
23223136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 23237134 - 23237217
Alignment:
| Q |
158 |
ggccacatctcaacctggtttccatttgttcattgatatgcctgattgtatctaaactattattgcttaatgaaatgagatagtt |
242 |
Q |
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|||||||||| |||| ||||||| |||| ||||| ||||||||||||||| ||| | |||||| |||||||||||||||||| |
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| T |
23237134 |
ggccacatctttacctaatttccatctgtttattgagatgcctgattgtatcgaaaatcttattg-ataatgaaatgagatagtt |
23237217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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