View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13244_low_6 (Length: 494)

Name: NF13244_low_6
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13244_low_6
NF13244_low_6
[»] chr5 (5 HSPs)
chr5 (219-416)||(10408378-10408574)
chr5 (60-224)||(10408032-10408196)
chr5 (434-485)||(10408601-10408652)
chr5 (1-29)||(8883459-8883487)
chr5 (1-29)||(36487544-36487572)
[»] chr6 (1 HSPs)
chr6 (1-31)||(2010059-2010089)
[»] chr2 (1 HSPs)
chr2 (1-31)||(1204905-1204935)
[»] chr1 (1 HSPs)
chr1 (1-30)||(29361502-29361531)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-29)||(151901-151929)
[»] chr4 (1 HSPs)
chr4 (1-29)||(33244761-33244789)
[»] chr3 (2 HSPs)
chr3 (1-29)||(23307771-23307799)
chr3 (1-29)||(41751362-41751390)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 219 - 416
Target Start/End: Original strand, 10408378 - 10408574
Alignment:
Q  219 aaaaatttaccatctagttttgatctatattggatggatgctagacttacacgaaaatttaccaactcaagagaccgacacgtctacatattggatgcaa 318  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10408378 aaaaatttaccatctagttttgatctatattggatg-atgtgagacttacacgaaaatttaccaactcaagagaccgacacgtctacatattggatgcaa 10408476  T
Q  319 catacataagccaaaatcttaaaatttgagagagaacatatatgattttttatcaaacacatctgccgtatagaaggaagagtaatggctttaattag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10408477 catacataagccaaaatcttaaaatttgagagagaacatatatgattttttatcaaacacatctgccgtatagaaggaagagtaatggctttaattag 10408574  T

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Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 10408032 - 10408196
Alignment:
Q  60 catccgtacttctgaactctcaaagtaaatatttaacttacatgtcgcaactcacaacactttaaaacaaccatataagagagaaggagagagagtcgca 159  Q
    ||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10408032 catccgtacttctgaactctctaaataaatatttaacctacatgtcacaactcacaacactttaaaacaaccatataagagagaaggagagagagtcgca 10408131  T
Q  160 tgcaaacttaatgtccttgatgtacgaatgcatcttgcaacgtagaaatcgaccaactcaaaaat 224  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10408132 tgcaaacttaatgtctttgatgtacgaatgcatcttgcaacgtagaaatcgaccaactcaaaaat 10408196  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 434 - 485
Target Start/End: Original strand, 10408601 - 10408652
Alignment:
Q  434 aattagatgacccgtacacatttaaagtcaggttggaaaactatgatgatgt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10408601 aattagatgacccgtacacatttaaagtcaggttggaaaactatgatgatgt 10408652  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8883459 - 8883487
Alignment:
Q  1 atacaatttgggacggagggagtataata 29  Q
    |||||||||||||||||||||||||||||    
T  8883459 atacaatttgggacggagggagtataata 8883487  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36487544 - 36487572
Alignment:
Q  1 atacaatttgggacggagggagtataata 29  Q
    |||||||||||||||||||||||||||||    
T  36487544 atacaatttgggacggagggagtataata 36487572  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 2010089 - 2010059
Alignment:
Q  1 atacaatttgggacggagggagtataatata 31  Q
    |||||||||||||||||||||||||||||||    
T  2010089 atacaatttgggacggagggagtataatata 2010059  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1204935 - 1204905
Alignment:
Q  1 atacaatttgggacggagggagtataatata 31  Q
    |||||||||||||||||||||||||||||||    
T  1204935 atacaatttgggacggagggagtataatata 1204905  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 29361502 - 29361531
Alignment:
Q  1 atacaatttgggacggagggagtataatat 30  Q
    ||||||||||||||||||||||||||||||    
T  29361502 atacaatttgggacggagggagtataatat 29361531  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 151901 - 151929
Alignment:
Q  1 atacaatttgggacggagggagtataata 29  Q
    |||||||||||||||||||||||||||||    
T  151901 atacaatttgggacggagggagtataata 151929  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33244789 - 33244761
Alignment:
Q  1 atacaatttgggacggagggagtataata 29  Q
    |||||||||||||||||||||||||||||    
T  33244789 atacaatttgggacggagggagtataata 33244761  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23307799 - 23307771
Alignment:
Q  1 atacaatttgggacggagggagtataata 29  Q
    |||||||||||||||||||||||||||||    
T  23307799 atacaatttgggacggagggagtataata 23307771  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41751362 - 41751390
Alignment:
Q  1 atacaatttgggacggagggagtataata 29  Q
    |||||||||||||||||||||||||||||    
T  41751362 atacaatttgggacggagggagtataata 41751390  T

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