View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_7 (Length: 415)
Name: NF13244_low_7
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 44191563 - 44191159
Alignment:
| Q |
11 |
cacagatacaagaaaaccagcattcaggtggctaggcttaaaagggaagacattgaatgaggcatcactttacaattcaaaacaaaatgagtctaggaaa |
110 |
Q |
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| T |
44191563 |
cacagatacaagaaaaccagcattcaggtggctaggcttaaaagggaagacattgaatgaggcatcactttacaattcaaaacaaaatgagtctaggaaa |
44191464 |
T |
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| Q |
111 |
agggcgtttggaaatgatgtcacaaacataagctttgccaggaatagaacggacttgttcatgggcggggactttaagaagcaaaagacaatggaaaatg |
210 |
Q |
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| T |
44191463 |
agggcgtttggaaatgatgtcacaaacataagctttgccaggaatagaatggacttgttcatgggcggggactttaagaagcaaaagacaatggaaaatg |
44191364 |
T |
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| Q |
211 |
atagtggactatgtcaggaagatgtgaaacaaggcataaaacagacttcagcagctaactatcaatttggtccttttgctcctgcttttgtatccaaagc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44191363 |
atagtggactatgtcaggaagatgtgaaacaaggcataaaacagacttcagcagctaactatcaatttggtccttttgctcctgcctttgtatccaaagc |
44191264 |
T |
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| Q |
311 |
tggaagctctgagaataaagtgaagcaggtgcatgactgggagagtctcgctactgaacattcccctcagtatcaaaaccaaggcaattaagcattttca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44191263 |
tggaagctctgagaataaagtgaagcaggtgcatgactgggagagtctcgctactgaacattgccctcagtatcaaaaccaaggcaattaagcattttca |
44191164 |
T |
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| Q |
411 |
tctct |
415 |
Q |
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| T |
44191163 |
tctct |
44191159 |
T |
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