View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_8 (Length: 406)
Name: NF13244_low_8
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 85 - 391
Target Start/End: Complemental strand, 22803207 - 22802908
Alignment:
| Q |
85 |
tactttttattattgataaaatgattttatatttaaaaaatccttaaacatgttaaacttgtatgtaattatcttgtgattataattatgcatgaacgac |
184 |
Q |
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| T |
22803207 |
tactttttattagtgataaaatgattttatatttaaaaaatccttaaatatgttaaacttgtgtgtaattatcttgtgattataattatgcatgaacgac |
22803108 |
T |
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| Q |
185 |
annnnnnnnnnnaattttaaatttcccctttatatttccatatgttgaaaagttaattagaaaatgattattaattattaccaagnnnnnnnatgttacc |
284 |
Q |
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| T |
22803107 |
atttttt-------tttaaaatttcccctttatatttccatatgttgaaaagttaattagaaaatgattattaattattaccaagtttttttatgttacc |
22803015 |
T |
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| Q |
285 |
catctattaggtgtgctaaagagacaatcactacaccttaatctccttaagagacaatttataaatgtatgaaggtttttaacaactcgttaggttatta |
384 |
Q |
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| T |
22803014 |
catatattagatgtgctaaagagacaatcactacaccttaatatccttaagagacaatttataaatgtatgaaggtttttaacaactcgttaagttatta |
22802915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 22803728 - 22803649
Alignment:
| Q |
14 |
aggacatggagttaatcagataatttatgtcaatgataatgatgaagaaatcatgcatttacaaatctgtatacttttta |
93 |
Q |
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| T |
22803728 |
aggacatggagtaaatcaaataatttatgtcaatgataatgatgaagaaatcatgcatttacaattctgtatacttttta |
22803649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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