View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13245_high_15 (Length: 468)
Name: NF13245_high_15
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 41366166 - 41366608
Alignment:
| Q |
8 |
cgaagaatatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactg |
107 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366166 |
cgaaaaatatgtgttgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactg |
41366265 |
T |
|
| Q |
108 |
caagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaaga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41366266 |
caagtgaaggatcggttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcgggcagcatttggaaaaaagaataaacaccaaga |
41366365 |
T |
|
| Q |
208 |
agtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366366 |
agtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttgg |
41366465 |
T |
|
| Q |
308 |
ccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41366466 |
ccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatg |
41366565 |
T |
|
| Q |
408 |
atgatctagtagatgttcttctcaagattcaacgtgtaaatca |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366566 |
atgatctagtagatgttcttctcaagattcaacgtgtaaatca |
41366608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 25 - 440
Target Start/End: Original strand, 41332003 - 41332418
Alignment:
| Q |
25 |
agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagtt |
124 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41332003 |
agagctattaagtgcaaagcgtgtccaatcatttaggtccataagagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcggtt |
41332102 |
T |
|
| Q |
125 |
gttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaa |
224 |
Q |
| |
|
|| |||||||||| | |||| ||||| | |||| |||||| ||||||||| |||| ||||| |||| ||||| | ||||||| ||||| | |||||||| |
|
|
| T |
41332103 |
gtaaatctcactcggaagattttctcaatgacaaatgggataacagcgcgggcagcttttgggaaaaggaatagaaaccaagatgtgttcatatcagcaa |
41332202 |
T |
|
| Q |
225 |
tgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttga |
324 |
Q |
| |
|
|| || || |||| |||||| ||||||||| |||||||||||||||||||||||||||| |||||| | ||| || | || ||| | || |
|
|
| T |
41332203 |
tggagaaagtattggtgctattaggaggatttgaaattgcagatttgtatccttctattaaaatgcttcaatgcatgagtagggagaagaccaaaatgga |
41332302 |
T |
|
| Q |
325 |
aaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgtt |
424 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||| |||||||| ||||||| ||| | ||||||| |||| | || |||| ||||||||||||||| |
|
|
| T |
41332303 |
aaaaattcatagagagcttgatatgataatgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgtt |
41332402 |
T |
|
| Q |
425 |
cttctcaagattcaac |
440 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41332403 |
cttctcaagattcaac |
41332418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 25 - 440
Target Start/End: Original strand, 41327990 - 41328405
Alignment:
| Q |
25 |
agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagtt |
124 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41327990 |
agagctattaagtgcaaagcgtgtacaatcatttaggtccataagagaagatgaggtgtcaaaccttgttaaatcaataactgcaagtgaaggatcagtt |
41328089 |
T |
|
| Q |
125 |
gttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaa |
224 |
Q |
| |
|
||||||||||||| | |||| ||||| | |||| |||||| ||||||||| |||| ||||| |||| ||||| ||||||||| ||||| | | ||||| |
|
|
| T |
41328090 |
gttaatctcactcggaagattttctcaatgacaaatgggataacagcgcgggcagcttttgggaaaaggaatagacaccaagatgtgttcataccagcat |
41328189 |
T |
|
| Q |
225 |
tgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttga |
324 |
Q |
| |
|
|| || || || | |||||| ||| ||||| |||||||||||||||||||||||||| | |||||| | | | | || | || ||| | || |
|
|
| T |
41328190 |
tggagaaagtagtggtgctattaggaagatttgaaattgcagatttgtatccttctattaaattgcttcaatggatgactagggagaagaccaaaatgga |
41328289 |
T |
|
| Q |
325 |
aaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgtt |
424 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||| |||||||| ||||||| ||||| ||||||| |||| | || |||| ||||||||||||||| |
|
|
| T |
41328290 |
aaaacttcatacagagattgatatgatagcacaagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgtt |
41328389 |
T |
|
| Q |
425 |
cttctcaagattcaac |
440 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41328390 |
cttctcaagattcaac |
41328405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 29 - 440
Target Start/End: Original strand, 41316027 - 41316438
Alignment:
| Q |
29 |
ctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgtta |
128 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||| || |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316027 |
ctattaagcgcaaagcgtgtccaatcatttaggtctataagagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcagttgtta |
41316126 |
T |
|
| Q |
129 |
atctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaa |
228 |
Q |
| |
|
|||||||||| | |||| | ||| ||| |||||| |||||||| | || ||||| |||| || ||||||||||||||||||| ||||||||| | |
|
|
| T |
41316127 |
atctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaataga |
41316226 |
T |
|
| Q |
229 |
ggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaa |
328 |
Q |
| |
|
|||| || | | |||||||| ||| | ||| ||||||| ||||||||||||| | |||||| || ||| | | | || ||| | |||||| |
|
|
| T |
41316227 |
ggaagtagcaagtttgttgggaggcgtttgtattgtggatttgtttccttctattaaattgcttcaatgcttgagtagagcgaagaccaaaatggaaaaa |
41316326 |
T |
|
| Q |
329 |
cttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttc |
428 |
Q |
| |
|
||||| | |||| |||||||| ||||||||| |||||||| ||||||||||| | ||||||| ||| | || |||| ||||||||||||||||||| |
|
|
| T |
41316327 |
cttcacaaagagcttgatatgacattgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttc |
41316426 |
T |
|
| Q |
429 |
tcaagattcaac |
440 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41316427 |
tcaagattcaac |
41316438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 14 - 440
Target Start/End: Original strand, 41324081 - 41324507
Alignment:
| Q |
14 |
atatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtg |
113 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||||| ||||||||||||||| |||||||| || || |||||||||| || ||||||||||||||||| |
|
|
| T |
41324081 |
atatgtgttgtagagctattaagtgcaaagcgtgtccaatcatttaggtccacaagagaagatgaagtatcaaatcttgctacatcaataactgcaagtg |
41324180 |
T |
|
| Q |
114 |
aaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtt |
213 |
Q |
| |
|
|||||||| |||||||||||||||| | |||| ||||| | ||| |||||| ||| ||||| | || ||||| |||| || |||||||| || ||| |
|
|
| T |
41324181 |
aaggatcaattgttaatctcactcataagattttctcaatgacatatgggataacaacgcgggcggcttttggcaaaaggagcaaacaccagcaatcgtt |
41324280 |
T |
|
| Q |
214 |
taaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagt-tggccaag |
312 |
Q |
| |
|
|||||||||| | |||||||| | | | |||||||| ||| | ||| ||||||||||||||||||||| | |||||| | ||| ||| ||| |
|
|
| T |
41324281 |
taaatcagcagtagaggaaatagtaagtttgttgggaggcatttgtattgttgatttgtatccttctattaaattgcttcaatgcgtgagtagggcgaag |
41324380 |
T |
|
| Q |
313 |
gaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgat |
412 |
Q |
| |
|
| |||| | ||||||||||| | ||||| |||||||||||||||||| || ||||| ||||||||||| | ||||||| ||| | | || | || || |
|
|
| T |
41324381 |
gccaaaa-tggaaaaacttcacaaagagattgatatgatattgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatat |
41324479 |
T |
|
| Q |
413 |
ctagtagatgttcttctcaagattcaac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41324480 |
ctagtagatgttcttctcaagattcaac |
41324507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 440
Target Start/End: Complemental strand, 31188863 - 31188453
Alignment:
| Q |
30 |
tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaa |
129 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
31188863 |
tattaagtgcaaagcgtgtccaatcgtttaggtatataagagaagaagaggtgtcaaatcttgttaaatcaatatctgcaagtgaaggatcaattgttaa |
31188764 |
T |
|
| Q |
130 |
tctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaag |
229 |
Q |
| |
|
||||| ||| | |||| | | | | ||| ||||| || | || |||| ||||| |||| || |||||||||||||| || ||||||||||| ||| |
|
|
| T |
31188763 |
tctcagtcataagatttttttaatgacatcagggataacgacacgagcagcgtttgggaaaaggagtaaacaccaagaagctttcaaatcagcaataaag |
31188664 |
T |
|
| Q |
230 |
gaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaac |
329 |
Q |
| |
|
|| ||| || | |||||| ||||| | |||| ||| ||||||||||| ||||||| ||||| | | ||| || | | || ||| ||||||| | |
|
|
| T |
31188663 |
gagatagctagtttgctgggagaattttgtattgctgatgtgtatccttctgttaaaatgtttcaatgggtgagtagggcgaagacgaaagttgaaaagc |
31188564 |
T |
|
| Q |
330 |
ttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttct |
429 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||| |||||| |||| | ||||||| ||| | ||| |||| |||||||| ||| |||||| |
|
|
| T |
31188563 |
ttcataaagagattgatatgatattgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttct |
31188464 |
T |
|
| Q |
430 |
caagattcaac |
440 |
Q |
| |
|
||||||||||| |
|
|
| T |
31188463 |
caagattcaac |
31188453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 30 - 440
Target Start/End: Complemental strand, 31178818 - 31178408
Alignment:
| Q |
30 |
tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaa |
129 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| || |||||| ||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| || |
|
|
| T |
31178818 |
tattaagtgcaaagcatgtccaatcatttaggtatataagagaataagaggtgtcaaatcttattaaatcgatatctacaagtaaaggatcagttgtaaa |
31178719 |
T |
|
| Q |
130 |
tctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaag |
229 |
Q |
| |
|
||||| ||| | |||| || || | ||| | ||| || | || |||| ||||| |||| ||||||||||||| ||||||| |||||||||| ||| |
|
|
| T |
31178718 |
tctcagtcataagattttcgcaatgacatcggcgataacgacacgagcagcgtttgggaaaaggaataaacaccaacaagtgttccaatcagcaataaag |
31178619 |
T |
|
| Q |
230 |
gaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaac |
329 |
Q |
| |
|
|||||| | | |||||||||||| | |||| ||| ||||||||||||||||||| |||||| | | ||| || | || ||| ||||||| |
|
|
| T |
31178618 |
gaaatagcgagtttgatgggaggattttgtattgctgatgtgtatccttctattaaaatgcttcaacgggtgagtggggtgaagaccaaatttgaaaagt |
31178519 |
T |
|
| Q |
330 |
ttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttct |
429 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||| |||||||||| |||| | ||||||| ||| | ||| |||| |||||||| |||| ||| | |
|
|
| T |
31178518 |
ttcataaagagattgatatgatattgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttat |
31178419 |
T |
|
| Q |
430 |
caagattcaac |
440 |
Q |
| |
|
||||||||||| |
|
|
| T |
31178418 |
caagattcaac |
31178408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 30 - 440
Target Start/End: Original strand, 31224950 - 31225360
Alignment:
| Q |
30 |
tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaa |
129 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
31224950 |
tattaagtgcaaagcgtgtccaatcatttaggtatataagagaagaagaggtgtcaaatcttgttgaatcaatatctgcaagtgaaggatcaattgttaa |
31225049 |
T |
|
| Q |
130 |
tctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaag |
229 |
Q |
| |
|
||| | ||| | |||| || | ||| ||||| || | | | |||| ||||| |||| |||||| || || ||||||| | ||||||| | ||| |
|
|
| T |
31225050 |
tctgagtcataagatttatgcaatgacatcggggataacgacacaggcagcgtttgggaaaaggaataagcagcatcaagtgttcagatcagcactaaag |
31225149 |
T |
|
| Q |
230 |
gaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaac |
329 |
Q |
| |
|
|| ||| || | |||||||||||| | ||| ||| ||||||||||||| ||||| |||||| | | ||| || | | || ||| ||||||| | |
|
|
| T |
31225150 |
gagataactagtttgatgggaggattttgtattgttgatgtgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaagttgaaaagc |
31225249 |
T |
|
| Q |
330 |
ttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttct |
429 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||||||| |||| | ||||||| ||| | ||| |||| |||||||| ||| |||||| |
|
|
| T |
31225250 |
ttcataaagagattgatatgatattgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttct |
31225349 |
T |
|
| Q |
430 |
caagattcaac |
440 |
Q |
| |
|
|||||| |||| |
|
|
| T |
31225350 |
caagatacaac |
31225360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 41336921 - 41337203
Alignment:
| Q |
14 |
atatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtg |
113 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||| ||||| | ||| ||||||||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
41336921 |
atatgtgttgtagagctattaagtgcaaaacgtgtccaatcttttagtttcataagagaagaagaggtgtccgatcttgttaaatcaatatctgcaaatg |
41337020 |
T |
|
| Q |
114 |
aaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtt |
213 |
Q |
| |
|
|||||||| | ||||||||| || | |||| ||||| | || |||||| || || |||| ||||| |||||||| | ||||||| || |||| |
|
|
| T |
41337021 |
aaggatcaatcgttaatctctctaagtcgattttctcaatgacttatgggatcgtggcacgttcagcgtttgggaaaaagaacagacaccaacaattgtt |
41337120 |
T |
|
| Q |
214 |
taaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaa |
296 |
Q |
| |
|
|||||| |||| ||||| ||| |||||||||| ||||| | |||| || |||||||||||||||||||| ||||||| |
|
|
| T |
41337121 |
caaatcaacaatagaggaagcattgggcctattgggagaattttgtattgctgacttgtatccttctattaaaatacttcaaa |
41337203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 29 - 295
Target Start/End: Original strand, 41322077 - 41322344
Alignment:
| Q |
29 |
ctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataac-tgcaagtgaaggatcagttgtt |
127 |
Q |
| |
|
|||||||||||||| || || ||||||||||||| || |||||||| || ||| |||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
41322077 |
ctattaagtgcaaagcgcatccaatcatttaggtctataagagaagatgaagtgacaaatcttgttaaatcaataacttttaagtgaaggatcagttgtt |
41322176 |
T |
|
| Q |
128 |
aatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatga |
227 |
Q |
| |
|
||||||| | | | |||| ||||| | ||| |||||| |||||| || | | ||||| |||| ||||| ||||||||| ||||| | | ||||| || |
|
|
| T |
41322177 |
aatctcagtgagaagattttctcaatgacatatgggataacagcgagggcggtttttgggaaaaggaatagacaccaagatgtgttcataccagcattgg |
41322276 |
T |
|
| Q |
228 |
aggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaa |
295 |
Q |
| |
|
|| || || | |||||| ||| ||||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
41322277 |
agaaagtagtggtgctattaggaagatttgaaattgcagatttgtatccttctattaaattgcttcaa |
41322344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 380
Target Start/End: Original strand, 41369703 - 41369869
Alignment:
| Q |
215 |
aaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaagga |
314 |
Q |
| |
|
|||||||||||| ||||| | | ||| |||||| |||||||| |||| ||||||||||||||||||||||| ||||||| | ||||| || ||| || |
|
|
| T |
41369703 |
aaatcagcaatggaggaatcaataaagttattggaaggattttgcattgctgatttgtatccttctattaaaatacttcaaagggtaagtagggcaaaga |
41369802 |
T |
|
| Q |
315 |
aaaaacttgaaaaacttcatagagagac-tgatatgatattgcaagagatcatcgatgatcacaaaa |
380 |
Q |
| |
|
||| | ||||||||||| ||| || | |||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
41369803 |
ccaaaatggaaaaacttcagagaaaggcatgatattatattgcaagatatcatcaatgatcacaaaa |
41369869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 41369565 - 41369685
Alignment:
| Q |
14 |
atatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtg |
113 |
Q |
| |
|
|||||||| | ||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||| ||| || |||||||||||| || | ||| |
|
|
| T |
41369565 |
atatgtgttgtagagctattaaatgcaaagcgtgtccaatcatttaggtccataagagaagaagaggtttcatcactagttaaatcaatatctactggtg |
41369664 |
T |
|
| Q |
114 |
aaggatcagttgttaatctca |
134 |
Q |
| |
|
||| || ||||||| |||||| |
|
|
| T |
41369665 |
aagcattagttgttgatctca |
41369685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 41430954 - 41431066
Alignment:
| Q |
25 |
agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagtt |
124 |
Q |
| |
|
||||||||||||| ||||| ||||| | |||||| |||||| |||||||||||||| ||||| || |||||||| ||| | || ||||||||||| || |
|
|
| T |
41430954 |
agagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaaaactagttaaatccatatgtacatgtgaaggatcaatt |
41431053 |
T |
|
| Q |
125 |
gttaatctcactc |
137 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41431054 |
gttaatctcactc |
41431066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 31185343 - 31185277
Alignment:
| Q |
30 |
tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaa |
96 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
31185343 |
tattaagtgcaaagcgtgtctaatcatttaggtatataagagaagaagaggtgtcaaatcttgttaa |
31185277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 436
Target Start/End: Original strand, 41310581 - 41310694
Alignment:
| Q |
323 |
gaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg |
422 |
Q |
| |
|
|||||| |||| | ||||| | |||||||||||||||| |||||||| ||||||||||| | || |||| ||| | | || |||| ||||||||||||| |
|
|
| T |
41310581 |
gaaaaagttcacaaagagatttatatgatattgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatg |
41310680 |
T |
|
| Q |
423 |
ttcttctcaagatt |
436 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41310681 |
ttcttctcaagatt |
41310694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 41286141 - 41286325
Alignment:
| Q |
107 |
gcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| | ||| ||| |||||| || ||||| || | ||||| |||||||| | |||||||| |
|
|
| T |
41286141 |
gcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacaacctatgggataacggcgcgtgcaacttttgggaaaaagaacatacaccaag |
41286240 |
T |
|
| Q |
207 |
aagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattct |
291 |
Q |
| |
|
||| || |||| ||||||| ||||| ||| | || |||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
41286241 |
aagcattcaaattagcaatggaggaagcattgagcctgatgggaggattttgcattgttgatttgtatccttctattaaatttct |
41286325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 41359838 - 41359895
Alignment:
| Q |
25 |
agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgt |
83 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
41359838 |
agagctattaagtg-aaaatgtgtccaatcatttaggtccataagagaagaagatgtgt |
41359895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 41431253 - 41431311
Alignment:
| Q |
322 |
tgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaa |
380 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||| |||||| ||||||| |||| |
|
|
| T |
41431253 |
tgaaaaactttgtagagaaactgatacgatattgcaagacatcatcaatgatcataaaa |
41431311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 32 - 440
Target Start/End: Complemental strand, 17249549 - 17249141
Alignment:
| Q |
32 |
ttaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatc |
131 |
Q |
| |
|
||||||| ||||||||| |||| ||||| || | ||||||||||| |||| | ||||||||||||||||| | |||||||||||| |||||||||| |
|
|
| T |
17249549 |
ttaagtgttaaacgtgtccaatcgtttagatcggtaagagaagaagaagtgttagatcttgttaaatcaatattttcaagtgaaggatgtgttgttaatc |
17249450 |
T |
|
| Q |
132 |
tcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaagga |
231 |
Q |
| |
|
||||||| | |||| || |||||| |||||| ||||| |||| || || |||| ||| ||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
17249449 |
tcactcagaagatttcttctttaacatatgggatagtggcgcgagcagctttcgggaaaaggaacaaacaccaacaagtgttcaaatcagcaatagagga |
17249350 |
T |
|
| Q |
232 |
aatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaactt |
331 |
Q |
| |
|
|||| | | | ||||||||||||| | ||| ||||||||||||||||| ||||| ||| ||| | ||||| | | | ||| | ||||||||| |
|
|
| T |
17249349 |
aatagtgagtttgttgggaggattttgtattgttgatttgtatccttctatcaaaatacttaaaagggtaagtcaggtgaaaaccaaaatggaaaaactt |
17249250 |
T |
|
| Q |
332 |
catagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctca |
431 |
Q |
| |
|
||||| || | |||||||||||||||||| ||||| |||||||||| || | | || || ||||| | ||| |||| |||||||| |||| |||| ||| |
|
|
| T |
17249249 |
catagggaaattgatatgatattgcaagatatcatagatgatcacagaaatggacaaaacaaagcacgcaaggatgaagatctagttgatgctcttatca |
17249150 |
T |
|
| Q |
432 |
agattcaac |
440 |
Q |
| |
|
||||||||| |
|
|
| T |
17249149 |
agattcaac |
17249141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University