View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13245_high_18 (Length: 427)
Name: NF13245_high_18
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 12993651 - 12993245
Alignment:
| Q |
11 |
cacagaaccaaaagctacactcccttcccttcactctcacccttctattttcatccacataaacaaccacgtcaatttttctctttccaatttccaattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12993651 |
cacagaaccaaaagctacactcccttcccttcactctcacccttctattttcatccacataaacaaccacgtcaatttttctctttccaatttccaattt |
12993552 |
T |
|
| Q |
111 |
catcttctaaactaaatggcttcaactagtagaggagaaaaaacagaacctaatacatcctcctcaagttcacaacgacgccaccaacttcaaatcacta |
210 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12993551 |
catcttcaaaactaaatggcttcaactagtagaggagaaaaaacagaacctaatacatcctcctcaagttctcaacgacgccaccaacttcaaatcacta |
12993452 |
T |
|
| Q |
211 |
ctacaaaagaacctgaacaacaaaaca------acaataaatcaatgaaaaaagcaattgcacaatacactgaagacgcacgtctccacgccgttttcga |
304 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12993451 |
ctacaaaagaacctgaacaacaaaacaacaacaacaacaaatcaatgaaaaaagcaattgcacaatacactgaagacgcacgtctccacgccgttttcga |
12993352 |
T |
|
| Q |
305 |
acaatccggcgactctttcgattactctcaatccatccgtcttactacagctgcccactctcaatccgtacctgaacaacagatcactgcttacttagcc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12993351 |
acaatccggcgactctttcgattactctcaatccatccgtcttactacagctgcccactctcaatccgtacctgaacaacagatcactgcttacttagcc |
12993252 |
T |
|
| Q |
405 |
aaaatcc |
411 |
Q |
| |
|
||||||| |
|
|
| T |
12993251 |
aaaatcc |
12993245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University