View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_high_19 (Length: 411)
Name: NF13245_high_19
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 10612517 - 10612136
Alignment:
| Q |
12 |
tgagatgaaggctccaatgctgccgtaaacaccaccgcagccatcactaaccacaaattaataagtgaaataaggaattaaaataaaacacaataagcat |
111 |
Q |
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| T |
10612517 |
tgagttgaaggctccaatgctaccgtaaacaccaccgcagccatcactaaccacaaattaataagtgaaataaggaattaaaataaaacacaataagcat |
10612418 |
T |
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| Q |
112 |
aaaatcaaatagtattgatgccaataatgaataaatatttcaacaactgcatcaatggagaaaacggctgcataatttaaatttcttaatttatccagtg |
211 |
Q |
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| T |
10612417 |
aaaatcaaatagtattgatgccaataatgaataaatatttcaacaactgcatcgatggagaaaacggctgcataattaaaatttcttaatttatccagtg |
10612318 |
T |
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| Q |
212 |
attgtttcatttcagcatgaaagtaaatnnnnnnncaatcacatggttgataaaataatgatgctgattccaacatttgaacagaagtatataaaataat |
311 |
Q |
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| T |
10612317 |
attgtttcatttcagcatgaaagtaaataaaaaaacaatcacatggttgataaaataatgatgccgattccaacatttgaacagaagtatataaaataat |
10612218 |
T |
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| Q |
312 |
aagttgataggattaagaatataaaatcaacaaccacattaatataaagtattcaaattttaacaagagttgaaattggctg |
393 |
Q |
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| T |
10612217 |
gagttggtaggattaagaatataaaatcaacaaccacattaatataaagtattcaaattttaacaagagttgaaattggctg |
10612136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 41240712 - 41240654
Alignment:
| Q |
67 |
aattaataagtgaaataaggaattaaaataaaacacaataagcataaaatcaaatagta |
125 |
Q |
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| T |
41240712 |
aattaagaagtgatttaaggaattaaaataaaatacaataaacataaaatcaaatagta |
41240654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 30984715 - 30984643
Alignment:
| Q |
83 |
aaggaattaaaataaaacacaataagcataaaatcaaatagtattgatgccaataatgaataaatatttcaaca |
156 |
Q |
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||||||||||||||||||| |||| ||||||||||| |||||| || || |||||||| |||||||||||||| |
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| T |
30984715 |
aaggaattaaaataaaacatgataaacataaaatcaagtagtatcga-gctaataatgattaaatatttcaaca |
30984643 |
T |
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