View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13245_high_21 (Length: 395)
Name: NF13245_high_21
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 129 - 393
Target Start/End: Original strand, 8818301 - 8818565
Alignment:
| Q |
129 |
cttactaacccacaagcattttctacaagaaatacgtttgttttaattttctattgcaccaatggatacgtagaagtaagagttttcccttgtctaatag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8818301 |
cttactaacccacaagcattttctacaagaaatacgtttgttttaattttctattgcaccaatggatacgtagaagtaagagttttcccttgtctaatag |
8818400 |
T |
|
| Q |
229 |
tggggaacacatactagtggacttctacctgacgtgtcgcttgagtgagtgtgttatcacgttcctttacatgtgttcaaatttacaaagtaccaagtga |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8818401 |
tggggaacacatactagtggacttctacttgacgtgtcgcttgagtgagtatgctatcacgttcctttacatgtgttcaaatttacaaagtaccaagtga |
8818500 |
T |
|
| Q |
329 |
gatagaagtgttatgtgtttgtgatgtatctcgaaatttttatgtgcatcgtaacttgtaagtat |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
8818501 |
gatagaagtgttatgtgtttgtgacgtatctcgaaaaaattttgtgcatcgtaacttgtaagtat |
8818565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 8818191 - 8818255
Alignment:
| Q |
19 |
atgtgacggtaatacttcaagtcaaaaattgaggtagaacatccttcattctttaaatgtttcta |
83 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
8818191 |
atgtgacaataatacttcaggtcaaaaattggggtataacatccttcattctttaaatgtttcta |
8818255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University