View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_high_32 (Length: 238)
Name: NF13245_high_32
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6151818 - 6151582
Alignment:
| Q |
1 |
ttcagtaggtctagctccagtttgtcctccaataaccgggatggacgatacacttctgggtcctccattgataatgctaatatttctcccaaaaagtctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6151818 |
ttcagtaggtctagctccagtttgtcctccaataaccgggatgaacaatacaattctgggtcctccattgataatgctaatatttgtcccaaaaagtctt |
6151719 |
T |
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| Q |
101 |
agatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151718 |
agatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacac |
6151619 |
T |
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| Q |
201 |
tataacaacaaccatatatcatagagctctcacagta |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6151618 |
tataacaacaaccatatatcatagagctctcacagta |
6151582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6145398 - 6145178
Alignment:
| Q |
1 |
ttcagtaggtctagctccagtttgtcctccaataaccgggatggacgatacacttctgggtcctccattgataatgctaatatttctcccaaaaagtctt |
100 |
Q |
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||||||||||| |||||||||||||||||||||| |||| ||||||| | |||||| | ||||||||||||||||| ||||||| ||||||||||| |
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| T |
6145398 |
ttcagtaggtccagctccagtttgtcctccaatagtcggggtggacgacagacttcttgatcctccattgataatgcgaatatttgatccaaaaagtcta |
6145299 |
T |
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| Q |
101 |
agatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacac |
200 |
Q |
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| T |
6145298 |
agatatgctgcattacgatatgggctactttcttcattacgttggtttccaaaatggtattggttggccatattttatagcttcttacctgcatgcacgc |
6145199 |
T |
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| Q |
201 |
tataacaacaaccatatatca |
221 |
Q |
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|||||||||||||||||||| |
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| T |
6145198 |
cataacaacaaccatatatca |
6145178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 6125904 - 6125739
Alignment:
| Q |
61 |
tcctccattgataatgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtggg-----ttagtttcttcactatgttggtttcctaaac |
155 |
Q |
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|||| |||||||||||| |||||| ||||||||||||||||||||||||| || || |||| ||| |||||||| |||| ||||||||||||| |
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| T |
6125904 |
tccttcattgataatgcaaatattcgatccaaaaagtcttagatatactgcattacaatatgggcttctttaatttcttcattatgctggtttcctaaac |
6125805 |
T |
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| Q |
156 |
ggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatca |
221 |
Q |
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| T |
6125804 |
ggtattggttggccatattttatagcttctttcctacatgcactccataacaacaaccatatatca |
6125739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 28755444 - 28755297
Alignment:
| Q |
74 |
atgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggttggccatat |
173 |
Q |
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|||||||||||| |||||||||| ||| ||||| ||||||| ||| || | | |||||||| | || ||||||||||||| ||||||||||||||| |
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| T |
28755444 |
atgctaatatttgacccaaaaagtattaaatatattgcatcatgatatgagatcctttcttcattctgacggtttcctaaacgatattggttggccatag |
28755345 |
T |
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| Q |
174 |
tttatagcttcttacctgcattcacactataacaacaaccatatatca |
221 |
Q |
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|| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
28755344 |
attgtagcttcttacctgcatgcactacataacaacaaccatatatca |
28755297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 33731931 - 33732023
Alignment:
| Q |
129 |
tttcttcactatgttggtttcctaaacggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatca |
221 |
Q |
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|||||||| |||| | ||||||||||| ||||||||||||||| || | |||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
33731931 |
tttcttcattatgacgatttcctaaacgatattggttggccatagattgcaacttcttacctgcatgcacaccataacagcaaccatatatca |
33732023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 33803327 - 33803402
Alignment:
| Q |
146 |
tttcctaaacggtattggttggccatattttatagcttcttacctgcattcacactataacaacaaccatatatca |
221 |
Q |
| |
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||||||||||| ||||||||||||||| || | |||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
33803327 |
tttcctaaacgatattggttggccatagattgcaacttcttgcctgcatgcacaccataacaacaaccatatatca |
33803402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 28755712 - 28755803
Alignment:
| Q |
75 |
tgctaatatttctcccaaaaagtcttagatatactgcatcacgatgtgggttagtttcttcactatgttggtttcctaaacggtattggttggc |
168 |
Q |
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||||||||||| |||||||| |||| ||||| |||||||| || | || | |||||||| | || |||||||||||||||||||||||||| |
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| T |
28755712 |
tgctaatatttgacccaaaaa--cttaaatatattgcatcacaatataggctcctttcttcattctgatggtttcctaaacggtattggttggc |
28755803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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