View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13245_high_34 (Length: 236)

Name: NF13245_high_34
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13245_high_34
NF13245_high_34
[»] chr4 (5 HSPs)
chr4 (15-233)||(8818627-8818847)
chr4 (46-219)||(10032578-10032751)
chr4 (125-219)||(18812561-18812655)
chr4 (140-234)||(8678659-8678755)
chr4 (186-219)||(18789220-18789253)
[»] scaffold0245 (2 HSPs)
scaffold0245 (46-236)||(11132-11324)
scaffold0245 (46-236)||(9510-9702)
[»] chr1 (2 HSPs)
chr1 (46-236)||(1284865-1285057)
chr1 (101-220)||(35891392-35891511)
[»] chr5 (1 HSPs)
chr5 (15-219)||(4897322-4897526)
[»] scaffold0229 (1 HSPs)
scaffold0229 (46-236)||(9838-10030)
[»] chr3 (4 HSPs)
chr3 (131-219)||(34143069-34143157)
chr3 (55-219)||(548138-548302)
chr3 (58-129)||(25836417-25836489)
chr3 (25-117)||(26667113-26667207)
[»] chr6 (4 HSPs)
chr6 (125-219)||(25050979-25051073)
chr6 (156-219)||(6257979-6258042)
chr6 (186-219)||(6271321-6271354)
chr6 (36-88)||(26857843-26857895)
[»] chr7 (1 HSPs)
chr7 (56-129)||(3232944-3233018)
[»] chr8 (3 HSPs)
chr8 (15-52)||(10884016-10884053)
chr8 (18-90)||(29456302-29456375)
chr8 (15-90)||(35674978-35675054)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 8818847 - 8818627
Alignment:
Q  15 ataaatcatggttagttaatagtaaattagagttagttcattggttaagtagttaggaattagttagactaactcatctttataaaaactctcatcattg 114  Q
    |||||||||||||||||||||||||| ||||||| |||  |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||     
T  8818847 ataaatcatggttagttaatagtaaactagagtttgtttgttggttaagtagttaaaaattagttagactaactcatctttataaaaactcttatcatta 8818748  T
Q  115 tactttcttattatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatctt 214  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  8818747 tactttcctattatccttttctatctaattcaatataaatcataaggattattcctttgtatcaatctctcatgcctacttctcctataaacttcatctt 8818648  T
Q  215 ca--tcttcgatcctatcatt 233  Q
    ||  |||||||||| ||||||    
T  8818647 catctcttcgatccgatcatt 8818627  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 10032751 - 10032578
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| || |  |||||||||||||| | | ||||| ||||||||  |||||||| |||  ||||| |||||  |||||||    
T  10032751 gttagttggttggttaggtagttaagagtcggttagactaactcaccct-ataaataactctcactattgtactctctagttatctttttcattctaatt 10032653  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    |||||| ||||| ||||| |||| |||||| || ||| || ||||||||||||||||| ||||||||||||||||    
T  10032652 caatatgaattacaaggactattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatct 10032578  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 18812655 - 18812561
Alignment:
Q  125 ttatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||| ||||| |||||||||||||| ||||| ||||||||||  ||||| || ||| |||||||||||||||||||| ||||||||||||||||    
T  18812655 ttatctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctcatgcctacttctcctatgaacttcatcttcatct 18812561  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 8678659 - 8678755
Alignment:
Q  140 taattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatc--ttcgatcctatcattt 234  Q
    ||||| ||||| ||||| ||||||||||||||  | || |||  ||| ||||||||||||||| || ||||||||||||  ||||||||||||||||    
T  8678659 taattgaatatgaattacaaggattatttcttattttctacctatcaagcctacttctcctatgaatttcatcttcatctattcgatcctatcattt 8678755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 18789253 - 18789220
Alignment:
Q  186 atgcctacttctcctataaacttcatcttcatct 219  Q
    ||||||||||||||||| ||||||||||||||||    
T  18789253 atgcctacttctcctatgaacttcatcttcatct 18789220  T

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Target: scaffold0245 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 11132 - 11324
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| || ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  11132 gttagttggttggttaggtagttaagagttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 11230  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttca--tcttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| |||||| || ||| || | ||||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  11231 caatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctcttcgatcctatcgtttct 11324  T

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Target: scaffold0245; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 9510 - 9702
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| |  ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  9510 gttagttggttggttaggtagttaagtgttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 9608  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatc--ttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| || ||| || ||| || | ||||||||||||||| |||||||||||| ||  |||||||||||| |||||    
T  9609 caatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttcgtctattcgatcctatcgtttct 9702  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 1284865 - 1285057
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| || ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  1284865 gttagttggttggttaggtagttaagagttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 1284963  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttca--tcttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| |||||| || ||| || | ||||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  1284964 caatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctcttcgatcctatcgtttct 1285057  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 35891511 - 35891392
Alignment:
Q  101 aactctcatcattgtactttcttattatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcct 200  Q
    |||||||| | || |||| |||| || ||||||||   |||||||||||||||| | |||||||||| ||||||||||||| |||||| |||||||||||    
T  35891511 aactctcacctttttactctcttgttgtccttttcatcctaattcaatataaatgacaaggattattcctttgtatcaacctctcatgtctacttctcct 35891412  T
Q  201 ataaacttcatcttcatctt 220  Q
    || ||||||| ||| |||||    
T  35891411 atgaacttcacctttatctt 35891392  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 4897526 - 4897322
Alignment:
Q  15 ataaatcatggttagttaatagtaaattagagttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcatt 113  Q
    ||||| ||| ||||| |||| ||||| ||  |||||||  ||| ||| ||||||| || ||||||||||||||||| | | ||||| ||||||||  |||    
T  4897526 ataaaccatagttagataatggtaaactatggttagttggttgattaggtagttaagagttagttagactaactcaccct-ataaataactctcaatatt 4897428  T
Q  114 gtactttcttattatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatct 213  Q
    ||||| |||  ||| | |||||  ||||||||||||| ||||| |||||||||| |||||| || ||| || ||||||||||||||||| || |||||||    
T  4897427 gtactctctagttagctttttcattctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaagttcatct 4897328  T
Q  214 tcatct 219  Q
    ||||||    
T  4897327 tcatct 4897322  T

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Target: scaffold0229 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 9838 - 10030
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| |  ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  9838 gttagttggttggttaggtagttaagtgttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 9936  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatc--ttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| || ||| || ||| || | ||||||||||||||| |||||||||||| ||  |||||||||||| |||||    
T  9937 caatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttcgtctattcgatcctatcgtttct 10030  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 34143069 - 34143157
Alignment:
Q  131 ttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||| |||||||||||||| ||||| |||||||||| |||||| || ||| || ||||||||||||||||| ||||||| ||||||||    
T  34143069 ttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaacttcaccttcatct 34143157  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 548138 - 548302
Alignment:
Q  55 ttggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaattcaatataaa 153  Q
    ||||||| ||||||| || ||||||||||||||||| |  |||||| |||| | |  |||||||| ||| |||||| |||||  ||||||||||||| ||    
T  548138 ttggttaggtagttaagagttagttagactaactca-cactataaataactttaaatattgtactctctaattatctttttcattctaattcaatatgaa 548236  T
Q  154 ttataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||| |||||||||| |||||| || | | || ||| | ||||||||||| || |||||||||||||    
T  548237 ttacaaggattattcctttgtttctatctctaatgtccacttctcctatgaagttcatcttcatct 548302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 25836417 - 25836489
Alignment:
Q  58 gttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatc 129  Q
    |||| |||||||||| ||||||||||||  ||||| ||||||| |||||||| ||||||||| |||| |||||    
T  25836417 gttaggtagttaggagttagttagactagttcatccttataaataactctcaccattgtactctcttgttatc 25836489  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 26667207 - 26667113
Alignment:
Q  25 gttagttaata-gtaaattagagttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtac 117  Q
    ||||||||||| ||||||||  |||||||  || |||| ||||||| || ||||||||||||||||| |  |||||| |||||||| ||||||||    
T  26667207 gttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataactctcaccattgtac 26667113  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 25050979 - 25051073
Alignment:
Q  125 ttatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||| ||||| || ||||||||||| ||||| || ||||||| |||||| || ||| || ||||||||||||||||| ||||||||||||||||    
T  25050979 ttatctttttcaatttaattcaatatgaattacaaagattattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatct 25051073  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 6257979 - 6258042
Alignment:
Q  156 ataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||||| |||| ||||||||||| |  ||| ||||||||||||||| || |||||||||||||    
T  6257979 ataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaattcatcttcatct 6258042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 6271354 - 6271321
Alignment:
Q  186 atgcctacttctcctataaacttcatcttcatct 219  Q
    ||||||||||||||||| ||||||||||||||||    
T  6271354 atgcctacttctcctatgaacttcatcttcatct 6271321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 26857843 - 26857895
Alignment:
Q  36 gtaaattagagttagttcattggttaagtagttaggaattagttagactaact 88  Q
    |||||||||||||| ||  ||||||| ||||||| || |||||||||||||||    
T  26857843 gtaaattagagttaattggttggttaggtagttaagagttagttagactaact 26857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 3232944 - 3233018
Alignment:
Q  56 tggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatc 129  Q
    |||||| ||||||| || || |||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  3232944 tggttaggtagttaagagtttgttacactaactcatccttataaataactctcatcattgtattttcttattatc 3233018  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 10884016 - 10884053
Alignment:
Q  15 ataaatcatggttagttaatagtaaattagagttagtt 52  Q
    |||||||||||||||||||||||||| |||||||||||    
T  10884016 ataaatcatggttagttaatagtaaactagagttagtt 10884053  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 29456375 - 29456302
Alignment:
Q  18 aatcatggttagttaata-gtaaattagagttagttcattggttaagtagttaggaattagttagactaactca 90  Q
    |||||| |||||| |||| ||||| || |||||||| |||||||| ||||||| || ||| |||||||||||||    
T  29456375 aatcatagttagtcaataagtaaactatagttagttaattggttaggtagttatgagttatttagactaactca 29456302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 35675054 - 35674978
Alignment:
Q  15 ataaatcatggttagttaata-gtaaattagagttagttcattggttaagtagttaggaattagttagactaactca 90  Q
    ||||||||| ||||||||||| ||||| ||  |||||||  || ||||  ||||||||| |||||||||||||||||    
T  35675054 ataaatcatagttagttaatatgtaaactatggttagttggttagttagatagttaggagttagttagactaactca 35674978  T

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