View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_high_37 (Length: 225)
Name: NF13245_high_37
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 5469161 - 5468966
Alignment:
| Q |
16 |
cacagagccctaggttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaa |
115 |
Q |
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| T |
5469161 |
cacaaagcccttggttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaa |
5469062 |
T |
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| Q |
116 |
ataactcaaggatgtcatggaagccatgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatcc |
211 |
Q |
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| T |
5469061 |
ataactcaaggatgtcatggaagccatgctcgcagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatcc |
5468966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 5478768 - 5478603
Alignment:
| Q |
46 |
gctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgct |
145 |
Q |
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| T |
5478768 |
gctcattgaaggtgccaaactgattagccatcggaatttgttctgaaagattgttgtatgacaaattcaaatgactcaagaatgtcattgaagccatgct |
5478669 |
T |
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| Q |
146 |
cgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatcc |
211 |
Q |
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| T |
5478668 |
tggagggactggacctgaaagattattatgtgaaaggtcaagattttctaaatctattagtgatcc |
5478603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 5486907 - 5486739
Alignment:
| Q |
30 |
ttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatg |
129 |
Q |
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| T |
5486907 |
ttgcctacatatgatagctcattgaaggtgccaaattgattagccactggaatttgtccagaaaggttgttgtatgataagttcaaaaggctcaaaaatg |
5486808 |
T |
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| Q |
130 |
tcatggaagccatgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaat |
198 |
Q |
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| T |
5486807 |
taatggaagccatgcttggagggattgaacctgaaatatggttgtgtgaaaggtcaagactttctaaat |
5486739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 5491883 - 5491726
Alignment:
| Q |
54 |
aaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgctcgtaggga |
153 |
Q |
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| T |
5491883 |
aaggttccaaactgattagctaacggaattcttccagagagattgttgtatgacaagttcaaacgactcagaaatgtcatggaagccatgtttggaggga |
5491784 |
T |
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| Q |
154 |
ttggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatcc |
211 |
Q |
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| T |
5491783 |
ttggacctgaaagattgttatgtgaaagatcaagatattctaaatctgttagtgatcc |
5491726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 5502710 - 5502553
Alignment:
| Q |
41 |
tgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagcc |
140 |
Q |
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| T |
5502710 |
tgatggctcattgaaggtggcaaactgattagccatcggaatttgtcccaaaaggttgttgtatgacaagttcaaatgacttaggaatgtcatggaggcc |
5502611 |
T |
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| Q |
141 |
atgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaat |
198 |
Q |
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| T |
5502610 |
atgctttgaggaatgggacctataagatggttgtgtgaaaggtcaagactttctaaat |
5502553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 5497655 - 5497510
Alignment:
| Q |
55 |
aggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgctcgtagggat |
154 |
Q |
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| T |
5497655 |
aggtggcaaactgattagccagcggaattcttccggaaagattgttgtatgacaagttcaaatgacttaggaatgtcatggaagccatagttggagggat |
5497556 |
T |
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| Q |
155 |
tggaccggaaagattgttatgtgaaaggtcaagattttctaaatct |
200 |
Q |
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| T |
5497555 |
aggacccgaaaggttgttatgtgaaaagtcaaggttttctaaatct |
5497510 |
T |
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