View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13245_high_4 (Length: 716)

Name: NF13245_high_4
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13245_high_4
NF13245_high_4
[»] chr7 (1 HSPs)
chr7 (18-704)||(48482043-48482729)


Alignment Details
Target: chr7 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 18 - 704
Target Start/End: Original strand, 48482043 - 48482729
Alignment:
Q  18 aggtttggtcccccaagcaagtgaattattggtgcatcatccttctggcaatatagaagaaaaagtattgaatgagaccaaattaaagaaattagataac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482043 aggtttggtcccccaagcaagtgaattattggtgcatcatccttctggcaatatagaagaaaaagtattgaatgagaccaaattaaagaaattagataac 48482142  T
Q  118 aatctattacatagttttcgaggcagcagaaaaaccgcaagtgactatgtatgaattcaaagcagaagcctagagaagttgataacttgatctaaacttg 217  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482143 aatctattacatagttttcgatgcagcagaaaaactgcaagtgactatgtatgaattcaaagcagaagcctagagaagttgataacttgatctaaacttg 48482242  T
Q  218 ttcnnnnnnngcaatgaaaataagtaccttatttggaggccttttgtaaacacgacacttggcggcagatattggctcaacctcataatgttcagaggtt 317  Q
    |||       || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482243 ttctttttttgcgatgaaaataagtaccttattgggaggccttttgtaaacacgacacttggcggcagatattggctcaacctcataatgttcagaggtt 48482342  T
Q  318 gaaggttcaaggagttctaagttatttgatgaaataagctttgatcctctaaagcgtcccttgtgattttgaagtgaagttcttggagagaataccccca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482343 gaaggttcaaggagttctaagttatttgatgaaataagctttgatcctctaaagcgtcccttgtgattttgaagtgaagttcttggagagaataccccca 48482442  T
Q  418 gaggggtatgcacaaccactactgaatctggatttgggaccctaaaatgaaattaaaatgtaaaaacagtttttcaaaagaacacatggaaaataagatt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482443 gaggggtatgcacaaccactactgaatctggatttgggaccctaaaatgaaattaaaatgtaaaaacagtttttcaaaagaacacatggaaaataagatt 48482542  T
Q  518 agcataattgaaagaccagagctcaaacctgtgaactgcacaatatattagcgtctgtgttatttgagtccccttcttcactgtagaacgcaactgtaca 617  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482543 agcataattggaagaccagagctcaaacctgtgaactgcgcaatatattagcgtctgtgttatttgagtccccttcttcactgtagaacgcaactgtaca 48482642  T
Q  618 tttaaacaatatcaacatattttcccagcagcggaagtaatagccatgtaactaaatgcttacttccataaaaatctatatattgat 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482643 tttaaacaatatcaacatattttcccagcagcggaagtaatagccatgtaactaaatgcttacttccataaaaatctatatattgat 48482729  T

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