View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_high_5 (Length: 699)
Name: NF13245_high_5
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 128 - 683
Target Start/End: Complemental strand, 33154405 - 33153852
Alignment:
| Q |
128 |
gccctaccttgatcacctctcactatcaatggtagttagtcaaacatggcaattggttatatcatatcataggaccctaacctaaggcatacaattaaaa |
227 |
Q |
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| T |
33154405 |
gccctaccttgatcacctctcactatcaatggtagttagtcaaacatggcaattggttatatcatatcataggaccctaacctaaggcatacaattaaaa |
33154306 |
T |
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| Q |
228 |
tttgatcattgagtcctttcttcttgtataataattgcaaacccttttacttgtttcttaacaagacctaatttgttgacccgtaatgagtccattccct |
327 |
Q |
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| T |
33154305 |
tttgatcattgagtcctttcttcttgtataataattgcaaacccttttacttgtttcttaacaagacctaattcgttgacccgtaatgagtccattccct |
33154206 |
T |
|
| Q |
328 |
tttgcaactatagtttcccacgcgttctcaagcatagaggcaaaataagtcccacatacacaaatggacccatagatcatatcaacnnnnnnnnnnnnnn |
427 |
Q |
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| T |
33154205 |
tttgcaactatagtttcccacgcgttctcaagcatagaggcaaaataagtcccacatacacaaatggacccatagatcatatcaac--tatatatatata |
33154108 |
T |
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| Q |
428 |
nnngctagttgaatggagttaaaatgatggaaatttacgtatcttcttaggaaaccatgagatgtgtaatgtagattatagtggacatgtttgcaaaatt |
527 |
Q |
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| T |
33154107 |
tatgctagttgaatggagttaaaatgatggaaatttacgtatcttcttaggaaaccatgagatgtgtaatgtagattatagtggacatgtttgcaaaatt |
33154008 |
T |
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| Q |
528 |
atcttgatctttaatcatatctatgccccccactgtgtcatttgtatataggtattcagttaatcacacacaaaattgttggagaagacaaagtgtgtat |
627 |
Q |
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| T |
33154007 |
atcttgatctttaatcatatctatgctccccactgtgtcatttgtatataggtattcagttaatcacacacaaaattgttggagaagacacagtgtgtat |
33153908 |
T |
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| Q |
628 |
caaaccagccacatctcccttgtcatgatttgatacgtactaatatactttgtctt |
683 |
Q |
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| T |
33153907 |
caaaccagccacatctcccttgtcatgatttgatacgtactaatatactttgtctt |
33153852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 33154521 - 33154440
Alignment:
| Q |
12 |
taggagaaggagaaaaggaccaaaagataatcatagtgggagggaatcttgaagtggtgagtgtttccaacctattgaaccg |
93 |
Q |
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| T |
33154521 |
taggagaaggagaaaaggaccaaaagataatcatagtgggagggaatcttgaagtggtgagtgtttccaacctattgaaccg |
33154440 |
T |
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