View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_high_7 (Length: 659)
Name: NF13245_high_7
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_high_7 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 10 - 659
Target Start/End: Original strand, 39228866 - 39229515
Alignment:
| Q |
10 |
ataatacttgtatttgtatggactaaaaattgtaggcaaccatgttttgttgtacatctgaaagtttcaactttccctgtctaaaaaacacaacagacac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228866 |
ataatacttgtatttgtatggactaaaaattgtaggcaaccatgttttgttctacatctgaaagtttcaactttccctgtctaaaaaacacaacagacac |
39228965 |
T |
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| Q |
110 |
cactcgaactaggaatgaggcaaagatgtcacacaatggctatattgtgaagcaattatatgtagagtgtcattcaaagttcataccaagaattgggact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228966 |
cactcgaactaggaatgaggcaaagatgtcacacaatggctatattgtgaagcaattatatgtagagtgtcattcaaagttcataccaagaattgggact |
39229065 |
T |
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| Q |
210 |
ttactagagttcagtttcaaacaaatgtaatattgttctgtcaatgtaagagtgtattattttttggaatcactagagataacagaaatatataataaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229066 |
ttactagagttcagtttcaaacaaatgtaatattgttctgtcaatgtaagagtgtattattttttggaatcactagagataacagaaatatataataaaa |
39229165 |
T |
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| Q |
310 |
ctgattttagaggcctcgtgatatggaaagttctcagaggaatttccactcatccaccttgcaacttcatgtggctaaattaagccttgttcatacatgg |
409 |
Q |
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| T |
39229166 |
ctgattttagaggcctcgtgatatggaaagttctcataggaatttccactcatccaccttgcaacttcatgtggctaaattaagccttgttcatacatgg |
39229265 |
T |
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| Q |
410 |
acttctcgggtacgaaatgagcgacgtcaaataggttcattttgtatttggtggctcgacctgatctatttcatggcatcacatgtcacactctaaccat |
509 |
Q |
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| T |
39229266 |
acttctcgggtacgaaatgagcgacgtcaaataggttcattttgtatttggtggctcgacctgatctatttcatggcatcacatgtcacactctaaccat |
39229365 |
T |
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| Q |
510 |
caataagtttatgttcatattctaacatgctacctgtttttgtaggtgattgaaagctacaaagacctagcattctctgagtatgcaagggtagggagag |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39229366 |
caataagtttatgttcatattctaacatgctacctgtttttgtaggtgattgaaagctacaaagacctagcattctctgagtatgcaagggtaggaagag |
39229465 |
T |
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| Q |
610 |
cactagccctatatgaaattggtgacagagaagaagcaatagcagagatg |
659 |
Q |
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| T |
39229466 |
cactagccctatatgaaattggtgacagagaagaagcaatagcagagatg |
39229515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 4548211 - 4548275
Alignment:
| Q |
386 |
aaattaagccttgttcatacatggacttctcgggtacgaaatgagcgacgtcaaataggttcatt |
450 |
Q |
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| T |
4548211 |
aaattaatccttgttcatacatgggcttctcgggtacgaaatgagcgacttcaaataggttcatt |
4548275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 29264315 - 29264379
Alignment:
| Q |
386 |
aaattaagccttgttcatacatggacttctcgggtacgaaatgagcgacgtcaaataggttcatt |
450 |
Q |
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| T |
29264315 |
aaattaatccttgttcatacatgggcttctcgggtacgaaatgagcgacttcaaataggttcatt |
29264379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 210120 - 210064
Alignment:
| Q |
394 |
ccttgttcatacatggacttctcgggtacgaaatgagcgacgtcaaataggttcatt |
450 |
Q |
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| T |
210120 |
ccttgttcatacatgggcttctcgggtacgaaatgagcgacttcaaataggttcatt |
210064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 7610853 - 7610917
Alignment:
| Q |
386 |
aaattaagccttgttcatacatggacttctcgggtacgaaatgagcgacgtcaaataggttcatt |
450 |
Q |
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| T |
7610853 |
aaattaatccttgttcatacatgagattctcgggtacgaaatgagcgacttaaaataggttcatt |
7610917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 8938718 - 8938662
Alignment:
| Q |
394 |
ccttgttcatacatggacttctcgggtacgaaatgagcgacgtcaaataggttcatt |
450 |
Q |
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| T |
8938718 |
ccttgttcatacatgggattctcgggtacgaaatgagcgacttacaataggttcatt |
8938662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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