View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13245_low_1 (Length: 802)

Name: NF13245_low_1
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13245_low_1
NF13245_low_1
[»] chr7 (40 HSPs)
chr7 (654-789)||(28664955-28665090)
chr7 (675-788)||(17509248-17509360)
chr7 (675-788)||(17543854-17543966)
chr7 (678-789)||(10574348-10574459)
chr7 (675-782)||(36579362-36579469)
chr7 (675-783)||(11832982-11833091)
chr7 (696-788)||(17473767-17473859)
chr7 (696-788)||(17579355-17579447)
chr7 (678-782)||(45457606-45457710)
chr7 (678-782)||(45482031-45482135)
chr7 (675-789)||(6667359-6667474)
chr7 (675-789)||(5684329-5684443)
chr7 (675-789)||(5709379-5709493)
chr7 (696-782)||(9785302-9785388)
chr7 (675-789)||(42603812-42603926)
chr7 (675-765)||(46026095-46026186)
chr7 (678-771)||(22747568-22747661)
chr7 (675-782)||(32740717-32740824)
chr7 (678-789)||(39533018-39533128)
chr7 (687-789)||(21603439-21603540)
chr7 (675-788)||(41287921-41288035)
chr7 (678-772)||(48304454-48304549)
chr7 (731-789)||(21954861-21954919)
chr7 (649-789)||(21990599-21990740)
chr7 (705-789)||(4621410-4621494)
chr7 (523-609)||(3725814-3725900)
chr7 (730-789)||(15674655-15674713)
chr7 (689-782)||(1281187-1281280)
chr7 (731-789)||(10094462-10094519)
chr7 (673-782)||(24320273-24320382)
chr7 (654-789)||(27535396-27535536)
chr7 (675-788)||(3266346-3266465)
chr7 (696-789)||(39707275-39707368)
chr7 (736-789)||(42644702-42644754)
chr7 (731-789)||(14657864-14657923)
chr7 (507-558)||(23457816-23457867)
chr7 (402-453)||(23457816-23457867)
chr7 (678-747)||(40761556-40761626)
chr7 (731-789)||(43847091-43847148)
chr7 (705-765)||(2622586-2622647)
[»] chr2 (37 HSPs)
chr2 (649-790)||(34416803-34416944)
chr2 (679-782)||(27095673-27095776)
chr2 (674-789)||(25067815-25067930)
chr2 (675-782)||(44942249-44942356)
chr2 (675-789)||(12704651-12704765)
chr2 (675-789)||(43474171-43474285)
chr2 (675-784)||(15919838-15919947)
chr2 (675-789)||(33012041-33012155)
chr2 (675-782)||(11937908-11938016)
chr2 (675-782)||(5754252-5754359)
chr2 (675-782)||(22597099-22597206)
chr2 (649-783)||(36867943-36868080)
chr2 (704-790)||(17268166-17268252)
chr2 (675-764)||(32015184-32015274)
chr2 (703-789)||(34963109-34963194)
chr2 (675-788)||(13879050-13879171)
chr2 (675-788)||(14019175-14019296)
chr2 (732-789)||(17767594-17767651)
chr2 (675-789)||(31908859-31908973)
chr2 (696-789)||(20561175-20561268)
chr2 (675-783)||(4604356-4604464)
chr2 (675-782)||(9690023-9690130)
chr2 (694-789)||(35333488-35333583)
chr2 (687-789)||(18089435-18089537)
chr2 (675-789)||(38535348-38535462)
chr2 (736-789)||(6431430-6431483)
chr2 (709-789)||(13740703-13740783)
chr2 (731-789)||(4426701-4426758)
chr2 (387-452)||(14441108-14441174)
chr2 (684-772)||(38384501-38384590)
chr2 (696-790)||(4739316-4739408)
chr2 (702-789)||(10287049-10287135)
chr2 (675-758)||(28261966-28262049)
chr2 (704-789)||(9978712-9978797)
chr2 (735-789)||(11798559-11798613)
chr2 (731-789)||(32314463-32314520)
chr2 (736-789)||(17792499-17792552)
[»] scaffold0312 (1 HSPs)
scaffold0312 (675-789)||(6101-6215)
[»] chr1 (26 HSPs)
chr1 (675-789)||(424334-424448)
chr1 (673-789)||(14265246-14265362)
chr1 (675-789)||(3232752-3232866)
chr1 (675-789)||(27534663-27534777)
chr1 (675-789)||(7995603-7995718)
chr1 (674-789)||(12871584-12871699)
chr1 (674-789)||(32784071-32784186)
chr1 (675-789)||(42490857-42490971)
chr1 (675-772)||(33487089-33487187)
chr1 (675-789)||(17347563-17347676)
chr1 (676-789)||(29205250-29205363)
chr1 (675-788)||(45193670-45193783)
chr1 (675-782)||(28678180-28678287)
chr1 (675-789)||(4882402-4882516)
chr1 (675-789)||(20411537-20411651)
chr1 (706-783)||(37822394-37822471)
chr1 (696-789)||(9298457-9298549)
chr1 (385-457)||(8234312-8234384)
chr1 (674-765)||(15791554-15791646)
chr1 (654-789)||(42276300-42276434)
chr1 (731-783)||(44517168-44517219)
chr1 (733-789)||(51418037-51418091)
chr1 (675-789)||(18343578-18343692)
chr1 (731-789)||(10627021-10627078)
chr1 (404-441)||(25255908-25255945)
chr1 (420-465)||(35607217-35607262)
[»] chr4 (38 HSPs)
chr4 (675-783)||(24825613-24825721)
chr4 (674-789)||(29268820-29268935)
chr4 (649-788)||(478056-478194)
chr4 (696-772)||(31521967-31522044)
chr4 (675-783)||(43244430-43244538)
chr4 (675-789)||(6911644-6911758)
chr4 (649-782)||(22757029-22757165)
chr4 (736-789)||(22049447-22049500)
chr4 (667-782)||(7060280-7060395)
chr4 (675-782)||(26674336-26674443)
chr4 (678-789)||(26742506-26742617)
chr4 (678-772)||(394333-394428)
chr4 (675-789)||(20399946-20400060)
chr4 (677-782)||(44757092-44757197)
chr4 (675-783)||(7083865-7083973)
chr4 (674-790)||(7861247-7861363)
chr4 (696-772)||(13965545-13965622)
chr4 (675-789)||(30202002-30202116)
chr4 (731-789)||(12717160-12717218)
chr4 (675-783)||(29922798-29922909)
chr4 (687-783)||(24100115-24100211)
chr4 (675-771)||(24568773-24568870)
chr4 (696-783)||(51152110-51152197)
chr4 (675-782)||(8712494-8712601)
chr4 (675-789)||(5814311-5814425)
chr4 (675-781)||(11210364-11210470)
chr4 (675-789)||(25658131-25658245)
chr4 (731-785)||(3159063-3159117)
chr4 (674-783)||(24611848-24611957)
chr4 (675-789)||(39837558-39837673)
chr4 (675-765)||(27394794-27394885)
chr4 (701-782)||(38944197-38944278)
chr4 (708-789)||(50801214-50801295)
chr4 (732-789)||(6881978-6882034)
chr4 (675-770)||(7084170-7084266)
chr4 (741-789)||(27090755-27090803)
chr4 (731-782)||(43493337-43493387)
chr4 (736-789)||(39523435-39523487)
[»] chr3 (34 HSPs)
chr3 (654-782)||(53155488-53155616)
chr3 (675-788)||(36691851-36691964)
chr3 (667-782)||(31270279-31270397)
chr3 (675-789)||(32080805-32080919)
chr3 (675-789)||(48652491-48652605)
chr3 (667-789)||(31462797-31462922)
chr3 (17-96)||(27783607-27783686)
chr3 (673-782)||(49628145-49628255)
chr3 (675-770)||(1074962-1075058)
chr3 (733-789)||(2147749-2147805)
chr3 (696-782)||(11819068-11819154)
chr3 (676-789)||(14585427-14585540)
chr3 (675-771)||(3456907-3457004)
chr3 (678-782)||(30156340-30156443)
chr3 (649-789)||(36624745-36624885)
chr3 (675-789)||(13702023-13702137)
chr3 (675-789)||(55090634-55090748)
chr3 (701-782)||(34960916-34960997)
chr3 (731-789)||(54239069-54239126)
chr3 (702-782)||(35174695-35174775)
chr3 (667-789)||(40013323-40013450)
chr3 (675-771)||(53402594-53402691)
chr3 (675-782)||(4206569-4206676)
chr3 (675-782)||(48400863-48400970)
chr3 (696-790)||(27189444-27189538)
chr3 (675-782)||(39610168-39610283)
chr3 (402-465)||(47944337-47944400)
chr3 (739-789)||(41868345-41868394)
chr3 (736-789)||(22484991-22485043)
chr3 (19-96)||(27787555-27787632)
chr3 (736-789)||(24483729-24483781)
chr3 (48-93)||(27766363-27766408)
chr3 (404-453)||(34979177-34979226)
chr3 (736-789)||(38527289-38527341)
[»] scaffold0536 (1 HSPs)
scaffold0536 (649-788)||(2838-2979)
[»] chr6 (17 HSPs)
chr6 (675-782)||(6419908-6420015)
chr6 (675-789)||(12481413-12481527)
chr6 (675-789)||(15590122-15590236)
chr6 (675-782)||(21507858-21507965)
chr6 (673-782)||(14783221-14783330)
chr6 (675-789)||(4921924-4922039)
chr6 (675-763)||(29927447-29927536)
chr6 (675-789)||(8693700-8693817)
chr6 (675-782)||(23654214-23654321)
chr6 (696-783)||(31937468-31937554)
chr6 (675-789)||(2304853-2304967)
chr6 (388-466)||(29920458-29920537)
chr6 (675-789)||(35219947-35220060)
chr6 (52-96)||(2159735-2159779)
chr6 (52-96)||(2174298-2174342)
chr6 (741-789)||(2488169-2488217)
chr6 (402-455)||(9307284-9307337)
[»] chr5 (25 HSPs)
chr5 (675-789)||(17331292-17331406)
chr5 (675-789)||(17699517-17699631)
chr5 (649-789)||(27241002-27241142)
chr5 (675-789)||(6635213-6635328)
chr5 (674-788)||(17096283-17096400)
chr5 (678-782)||(43493839-43493943)
chr5 (696-783)||(42609129-42609216)
chr5 (667-749)||(7771888-7771971)
chr5 (673-772)||(12439693-12439792)
chr5 (675-789)||(28040593-28040707)
chr5 (675-789)||(29097753-29097867)
chr5 (696-789)||(32347757-32347851)
chr5 (675-771)||(6281008-6281105)
chr5 (675-761)||(981095-981182)
chr5 (675-789)||(20483150-20483264)
chr5 (731-789)||(17687226-17687283)
chr5 (675-771)||(26295118-26295215)
chr5 (704-782)||(178156-178234)
chr5 (675-789)||(33164511-33164625)
chr5 (695-789)||(34431044-34431138)
chr5 (675-781)||(39531454-39531558)
chr5 (740-789)||(3740387-3740435)
chr5 (736-793)||(39915583-39915639)
chr5 (739-789)||(39179871-39179920)
chr5 (740-789)||(12891706-12891754)
[»] chr8 (29 HSPs)
chr8 (673-782)||(37612615-37612724)
chr8 (675-788)||(10147910-10148024)
chr8 (649-772)||(1810287-1810410)
chr8 (675-782)||(31308106-31308219)
chr8 (675-789)||(2025260-2025374)
chr8 (675-789)||(11161846-11161960)
chr8 (675-789)||(14600749-14600863)
chr8 (681-789)||(30026931-30027039)
chr8 (675-782)||(2234528-2234635)
chr8 (694-789)||(3204807-3204901)
chr8 (675-789)||(41361696-41361810)
chr8 (732-789)||(32779001-32779058)
chr8 (704-782)||(10338880-10338958)
chr8 (675-789)||(24791219-24791333)
chr8 (675-789)||(31202422-31202536)
chr8 (675-789)||(24699794-24699910)
chr8 (675-783)||(1039950-1040057)
chr8 (675-789)||(9501553-9501668)
chr8 (678-789)||(12329593-12329704)
chr8 (675-782)||(23971152-23971259)
chr8 (675-782)||(31407806-31407913)
chr8 (675-789)||(39067740-39067854)
chr8 (675-752)||(7583851-7583929)
chr8 (687-724)||(1810431-1810468)
chr8 (388-453)||(6915516-6915581)
chr8 (731-782)||(30039389-30039440)
chr8 (731-782)||(37128544-37128594)
chr8 (731-789)||(2968552-2968610)
chr8 (696-758)||(13576257-13576319)
[»] scaffold0155 (1 HSPs)
scaffold0155 (696-789)||(35067-35162)
[»] scaffold1379 (2 HSPs)
scaffold1379 (678-789)||(1129-1240)
scaffold1379 (736-782)||(1-46)
[»] scaffold0432 (1 HSPs)
scaffold0432 (696-789)||(2460-2552)
[»] scaffold0056 (1 HSPs)
scaffold0056 (649-789)||(74102-74242)
[»] scaffold0321 (1 HSPs)
scaffold0321 (701-789)||(7167-7255)
[»] scaffold0286 (1 HSPs)
scaffold0286 (52-96)||(19700-19744)
[»] scaffold0001 (1 HSPs)
scaffold0001 (704-789)||(404301-404386)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 654 - 789
Target Start/End: Complemental strand, 28665090 - 28664955
Alignment:
Q  654 caaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatc 752  Q
    |||||||| ||| |||||  |||||||||||||| |||||| |||| |||||||||||||||||  ||||| ||||| ||||||||||||||||||||||    
T  28665090 caaaccctgaccgtcacccctttcttcttcttgtcagatgggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatc 28664991  T
Q  753 ctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||| ||||| ||||||||||| |||||    
T  28664990 ctaattgaataagtgattt-cacatattttctgtttt 28664955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 675 - 788
Target Start/End: Complemental strand, 17509360 - 17509248
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttcca 774  Q
    ||||||||||| | ||| ||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||| ||||||||||||||||| ||||| ||    
T  17509360 ttcttcttcttttcagagggatgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-ca 17509262  T
Q  775 catattttcagttt 788  Q
    ||||||||| ||||    
T  17509261 catattttctgttt 17509248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 675 - 788
Target Start/End: Original strand, 17543854 - 17543966
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttcca 774  Q
    ||||||||||| | ||| ||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||| ||||||||||||||||| ||||| ||    
T  17543854 ttcttcttcttttcagagggatgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-ca 17543952  T
Q  775 catattttcagttt 788  Q
    ||||||||| ||||    
T  17543953 catattttctgttt 17543966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 678 - 789
Target Start/End: Original strand, 10574348 - 10574459
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||| |||||||| |||| ||||||||||||||||  |||||| ||||| |||| |||||||||||| |||||||||||||||| ||||||  |||    
T  10574348 ttcttctttttagatgggtgatttagggtcaattttgactcaaaaatcacccctccgaattgtttttccttttatcctaattgaataaacgattt-taca 10574446  T
Q  777 tattttcagtttt 789  Q
    ||||||| |||||    
T  10574447 tattttctgtttt 10574459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 36579469 - 36579362
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| ||||||| |||||||||||||||||  ||||| ||||| |||| |||||||||||||||||||| ||||||||| || ||||    
T  36579469 ttcttcttcttttaagagggatgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtga-ttcc 36579371  T
Q  774 acatatttt 782  Q
    |||||||||    
T  36579370 acatatttt 36579362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 783
Target Start/End: Original strand, 11832982 - 11833091
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc--cgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| | ||| ||||||| || |||||||||||||| |||||| ||||||  ||| |||||||||||||| ||||||||||||||| |||||     
T  11832982 ttcttcttcttttcagagggatgatttatggtcaattttgacccaaaaatcaccccctccgaattgtttttccttctttcctaattgaataagtgattt- 11833080  T
Q  773 cacatattttc 783  Q
    |||||||||||    
T  11833081 cacatattttc 11833091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 696 - 788
Target Start/End: Complemental strand, 17473859 - 17473767
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagttt 788  Q
    |||| ||||||||||||||||| |||||| ||||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||    
T  17473859 tgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgttt 17473767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 696 - 788
Target Start/End: Original strand, 17579355 - 17579447
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagttt 788  Q
    |||| ||||||||||||||||| |||||| ||||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||    
T  17579355 tgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgttt 17579447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 678 - 782
Target Start/End: Complemental strand, 45457710 - 45457606
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||| ||||| || |||| ||||||||||||||||  |||||| || || |||| ||||||||||||||||| |||||||||||| ||||| ||||    
T  45457710 ttcttctttttagaggggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgattt-caca 45457612  T
Q  777 tatttt 782  Q
    ||||||    
T  45457611 tatttt 45457606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 678 - 782
Target Start/End: Original strand, 45482031 - 45482135
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||||| ||| |  |||| |||||||||||||||||  ||||| ||||| ||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  45482031 ttcttcttgtcagaggagtgatttagggtcaattttgaccccaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-caca 45482129  T
Q  777 tatttt 782  Q
    ||||||    
T  45482130 tatttt 45482135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 6667359 - 6667474
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaa-ttgaataagcgatttc 772  Q
    ||||||||||| ||||| |  |||| ||||||||||||||||| |||||| ||||| |||| |||||||| ||||||| |||| ||||||||| |||||     
T  6667359 ttcttcttctttttagaggagtgatttagggtcaattttgacccaaaaatcaccccaccgaattgttttttcttctattctaatttgaataagtgattt- 6667457  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  6667458 cacatattttctgtttt 6667474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 5684329 - 5684443
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| ||||| ||| | || |||| ||||||||||||||||  |||||| ||| | |||| ||||||||| |||||||||||||||||||| ||||| |    
T  5684329 ttcttattctttttaaaggggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-c 5684427  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  5684428 acatattttctgtttt 5684443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 5709379 - 5709493
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| ||||| ||| | || |||| ||||||||||||||||  |||||| ||| | |||| ||||||||| |||||||||||||||||||| ||||| |    
T  5709379 ttcttattctttttaaaggggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-c 5709477  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  5709478 acatattttctgtttt 5709493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 696 - 782
Target Start/End: Original strand, 9785302 - 9785388
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||| ||||||||||||||||| |||||| |||||  ||| ||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  9785302 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgattt-cacatatttt 9785388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 42603926 - 42603812
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| |||||  | |||| || |||||||||||||  |||||| ||||| |||| ||||||||| ||||||| |||||||||||| ||||| |    
T  42603926 ttcttcttctttttagagcggtgatttatggtcaattttgactcaaaaatcacccctccgaattgtttttcattctatcataattgaataagtgattt-c 42603828  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  42603827 acatattttctgtttt 42603812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 765
Target Start/End: Complemental strand, 46026186 - 46026095
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataag 765  Q
    ||||||||||| | ||| || |||| ||||||||||||||||| |||||| || |  |||| ||||||||||||||||||||||||||||||    
T  46026186 ttcttcttcttttcagaggggtgatttagggtcaattttgacccaaaaatcacacatccgaattgtttttccttctatcctaattgaataag 46026095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 678 - 771
Target Start/End: Complemental strand, 22747661 - 22747568
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    |||||||||| | | || |||| ||||||||||||||||| |||||| ||||| || ||||||||| |||||||||||||||||||||| |||||    
T  22747661 ttcttcttgtcaaaggggtgatttagggtcaattttgacccaaaaatcacccctccaagttgtttt-ccttctatcctaattgaataagtgattt 22747568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 32740717 - 32740824
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatt-accccc-cgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| | ||| || |||| ||| ||||||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||||||| |||||     
T  32740717 ttcttcttcttttcagaggg-tgatttagagtcaattttgaccaaaaaaatcaccccctcgaattgtttttccttctatcctaattgaataagtgattt- 32740814  T
Q  773 cacatatttt 782  Q
    ||||||||||    
T  32740815 cacatatttt 32740824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 678 - 789
Target Start/End: Complemental strand, 39533128 - 39533018
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||| ||||| || |||| ||||||||||||||||| |||||| | | | | || ||||||||||||||||| |||||||||||| ||||| ||||    
T  39533128 ttcttctttttagaggg-tgatttagggtcaattttgacccaaaaatcatctctctgaattgtttttccttctatcttaattgaataagtgattt-caca 39533031  T
Q  777 tattttcagtttt 789  Q
    ||||||| |||||    
T  39533030 tattttctgtttt 39533018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 687 - 789
Target Start/End: Original strand, 21603439 - 21603540
Alignment:
Q  687 ttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttccacatattttcag 785  Q
    ||||| || |||| ||||||||||||||||| |||||  ||||| | || |||||||||||||||||||||||||||||| ||||| |||||||| || |    
T  21603439 ttagaggggtgatttagggtcaattttgacc-aaaaagcacccctctgaattgtttttccttctatcctaattgaataagtgattt-cacatattctctg 21603536  T
Q  786 tttt 789  Q
    ||||    
T  21603537 tttt 21603540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 788
Target Start/End: Original strand, 41287921 - 41288035
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagt-tgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| ||||| || |||| ||||||||||||||||| || ||| ||||  ||||||   ||||||||||||||||||||||||| | |||||     
T  41287921 ttcttcttcttcttagaggggtgatttagggtcaattttgacccaataatcacccatccgagtgattttttccttctatcctaattgaataggtgattt- 41288019  T
Q  773 cacatattttcagttt 788  Q
    ||||||||||| ||||    
T  41288020 cacatattttctgttt 41288035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 678 - 772
Target Start/End: Complemental strand, 48304549 - 48304454
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||||||| | ||| || |||| ||||||||||||||||| |||||| ||||  |||| ||| ||||||| |||||||||||||||||| ||||||    
T  48304549 ttcttcttttcagaggggtgatttagggtcaattttgacccaaaaatcacccatccgaattgcttttcctgctatcctaattgaataagtgatttc 48304454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 731 - 789
Target Start/End: Complemental strand, 21954919 - 21954861
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||| ||||||||||||| |||||  |||||||||||||| ||||||||    
T  21954919 ccgagttgtttttcattctatcctaattaaataaatgatttccacatattgtcagtttt 21954861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 649 - 789
Target Start/End: Original strand, 21990599 - 21990740
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgttttt-cct 746  Q
    |||| ||||||||| || |||||  |||||  ||||| | ||| || |||| ||||||||||||||||  |||||| ||||| |||| |||||||| |||    
T  21990599 cttctcaaaccctagccgtcacccctttctctttcttttcagaggggtgatttagggtcaattttgactgaaaaatcacccctccgaattgttttttcct 21990698  T
Q  747 tctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
     |||||||||||||||||| ||||| ||||||| ||| |||||    
T  21990699 gctatcctaattgaataagtgattt-cacatatattctgtttt 21990740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 705 - 789
Target Start/End: Complemental strand, 4621494 - 4621410
Alignment:
Q  705 gtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||||| || |   ||||||||||||||||||| | |||||||||||||||||| || || |||||||||||    
T  4621494 gtcaattttgacctaaaaatcactctttcgagttgtttttccttctaccataattgaataagcgattt-catatgttttcagtttt 4621410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 523 - 609
Target Start/End: Complemental strand, 3725900 - 3725814
Alignment:
Q  523 aatagtttttgattgttcattttgttaatcaaaata-tctatgatgttaaaatagttcattaatgctaacattaactcttttaatata 609  Q
    ||||||| ||||||||||| ||| |||||||||| | |||||||   ||||||| |||||||||| |||||||||||||||| |||||    
T  3725900 aatagttcttgattgttcacttt-ttaatcaaaacagtctatgacaataaaataattcattaatgttaacattaactcttttcatata 3725814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 730 - 789
Target Start/End: Complemental strand, 15674713 - 15674655
Alignment:
Q  730 cccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||    
T  15674713 cccgaattgtttttcctcctatcctaattgaataagtgattt-cacatattttctgtttt 15674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 782
Target Start/End: Complemental strand, 1281280 - 1281187
Alignment:
Q  689 agatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||||| |||| ||||||| ||||||||| |||||| ||||  |||| ||||||||| || ||| ||||||||||||| ||||| ||||||||||    
T  1281280 agatgggtgatttagggtccattttgaccaaaaaatcacccatccgaattgtttttcattatattctaattgaataagtgattt-cacatatttt 1281187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 10094462 - 10094519
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  10094462 ccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttt 10094519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 782
Target Start/End: Complemental strand, 24320382 - 24320273
Alignment:
Q  673 ttttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    |||||||||||||||||||  | | || || |||||||||||||  |||||| || |   ||||||||||||||||||||| ||||| |||||| |||||    
T  24320382 ttttcttcttcttgttagaatggttatttaaggtcaattttgactcaaaaatcactcattcgagttgtttttccttctatcttaatttaataagtgattt 24320283  T
Q  772 ccacatatttt 782  Q
     ||||||||||    
T  24320282 -cacatatttt 24320273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 789
Target Start/End: Original strand, 27535396 - 27535536
Alignment:
Q  654 caaaccctaaccatcaccattttcttcttcttgtt---agatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttct 749  Q
    |||||||||  | ||||| ||||||||||||| ||   ||| || |||| ||||||||||||| | | |||||| ||||  |||| ||||||||||||||    
T  27535396 caaaccctagtcgtcacccttttcttcttcttttttacagaggggtgatttagggtcaatttttatccaaaaatcacccatccgaattgtttttccttct 27535495  T
Q  750 atcctaattgaataagcgatttc-cacatattttcagtttt 789  Q
    || ||||||| ||||| |||||| || |||||||| |||||    
T  27535496 attctaattgtataagtgatttcacatatattttctgtttt 27535536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 788
Target Start/End: Original strand, 3266346 - 3266465
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgttttt------ccttctatcctaattgaataagcg 767  Q
    ||||||||||||| ||| || |||| || |||||||||||| | || ||| | ||| |||||||||||||      |||||||||||||||||||||| |    
T  3266346 ttcttcttcttgtcagaggggtgatttatggtcaattttgatccaataatcatccctccgagttgttttttttcttccttctatcctaattgaataagtg 3266445  T
Q  768 atttccacatattttcagttt 788  Q
    |||| ||||||||||| ||||    
T  3266446 attt-cacatattttctgttt 3266465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 789
Target Start/End: Original strand, 39707275 - 39707368
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| ||||||||||||||||| ||||    | | |||||||||||||| ||||||||||||| ||||||  |||||||  |||||||| ||||    
T  39707275 tgatttagggtcaattttgacccaaaatcatcactccgagttgtttttctttctatcctaattaaataagttatttccatgtattttcactttt 39707368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 789
Target Start/End: Original strand, 42644702 - 42644754
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| || |||||    
T  42644702 ttgtttttccttctatcctaattgaataagtgattt-cacatattctctgtttt 42644754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 789
Target Start/End: Complemental strand, 14657923 - 14657864
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttc-cacatattttcagtttt 789  Q
    ||||| |||||||||||||||| ||||||||||||  ||||| || ||||||||||||||    
T  14657923 ccgagctgtttttccttctatcttaattgaataagttatttcacatatattttcagtttt 14657864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 558
Target Start/End: Complemental strand, 23457867 - 23457816
Alignment:
Q  507 tgtatcgaagttttataatagtttttgattgttcattttgttaatcaaaata 558  Q
    ||||||||| ||||| ||||||| |||||||| || ||||||||||||||||    
T  23457867 tgtatcgaaattttaaaatagttattgattgtgcactttgttaatcaaaata 23457816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 23457867 - 23457816
Alignment:
Q  402 tgtatcgaaattttataatagtttttgattattcattttgttaatcaaaata 453  Q
    ||||||||||||||| ||||||| |||||| | || ||||||||||||||||    
T  23457867 tgtatcgaaattttaaaatagttattgattgtgcactttgttaatcaaaata 23457816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 747
Target Start/End: Original strand, 40761556 - 40761626
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttcctt 747  Q
    |||||||| | ||| ||||||| ||||||||||||||||| |||||| ||||| ||||  |||||||||||    
T  40761556 ttcttcttttcagagggatgatttagggtcaattttgacccaaaaatcacccctccgaactgtttttcctt 40761626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 43847091 - 43847148
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||||||  ||||||||||||||||| ||||| ||||||||||| |||||    
T  43847091 ccgaattgtttttcctcttatcctaattgaataagtgattt-cacatattttctgtttt 43847148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 765
Target Start/End: Original strand, 2622586 - 2622647
Alignment:
Q  705 gtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataag 765  Q
    ||||||||||||| |||||| || |  |||| ||||||||||||||||| ||||||||||||    
T  2622586 gtcaattttgacccaaaaatcacgcatccgaattgtttttccttctatcttaattgaataag 2622647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 649 - 790
Target Start/End: Complemental strand, 34416944 - 34416803
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatta-ccccccgagttgtttttcctt 747  Q
    |||| |||||||||||| |||||  |||||||||||| | ||| |||||||||| |||||||||||||| |||||| | ||| |||| ||||||||||||    
T  34416944 cttctcaaaccctaaccgtcacctctttcttcttcttttcagagggatgatctaaggtcaattttgaccaaaaaatcatccctccgaattgtttttcctt 34416845  T
Q  748 ctatcctaattgaataagcgatttccacatattttcagttttt 790  Q
     ||||||||||||||||| ||||| ||||||||||||||||||    
T  34416844 atatcctaattgaataagtgattt-cacatattttcagttttt 34416803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 679 - 782
Target Start/End: Original strand, 27095673 - 27095776
Alignment:
Q  679 tcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacat 777  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  27095673 tcttcttgtcagatgggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacat 27095771  T
Q  778 atttt 782  Q
    |||||    
T  27095772 atttt 27095776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 674 - 789
Target Start/End: Original strand, 25067815 - 25067930
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||||||||||  | |||| ||||||||||||||||| |||||| ||||| |||| ||||||||||||||||  |||||||||||| |||||     
T  25067815 tttcttcttcttgttagagaggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgattt- 25067913  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  25067914 cacatattttctgtttt 25067930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 44942249 - 44942356
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | |||||| |||| || |||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||| |    
T  44942249 ttcttcttcttttcagatgggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgattt-c 44942347  T
Q  774 acatatttt 782  Q
    |||||||||    
T  44942348 acatatttt 44942356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 12704651 - 12704765
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| ||||||||||||||||| |||||| |||||  ||| |||||||||||| ||||||||||||||||| ||||| |    
T  12704651 ttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgattt-c 12704749  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  12704750 acatattttctgtttt 12704765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 43474285 - 43474171
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| ||||||||||||||||| |||||| ||||  |||| |||||||||||||||||||||||||||||| ||||| |    
T  43474285 ttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgattt-c 43474187  T
Q  774 acatattttcagtttt 789  Q
    ||| |||||| |||||    
T  43474186 acaaattttctgtttt 43474171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 675 - 784
Target Start/End: Original strand, 15919838 - 15919947
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||| |||||| ||||| || |||| ||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||  ||||| |    
T  15919838 ttctccttcttattagaggggtgatttagagtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataaatgattt-c 15919936  T
Q  774 acatattttca 784  Q
    |||||||||||    
T  15919937 acatattttca 15919947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 33012041 - 33012155
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| || |||| ||||||||||||||||| |||||| || |  |||| |||||||||||||||| ||||||||||||| ||||| |    
T  33012041 ttcttcttcttttcagacgggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctattctaattgaataagtgattt-c 33012139  T
Q  774 acatattttcagtttt 789  Q
    ||||||||||||||||    
T  33012140 acatattttcagtttt 33012155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 11938016 - 11937908
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttcc-ttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| | ||| || |||| ||||||||||||||||| |||||| ||||| |||| |||||||||| |||||||||||||||||||| |||||     
T  11938016 ttcttcttcttttcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttcctttctatcctaattgaataagtgattt- 11937918  T
Q  773 cacatatttt 782  Q
    ||||||||||    
T  11937917 cacatatttt 11937908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 5754252 - 5754359
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatta-ccccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| ||||||||||||||||| |||||| | ||| |||| |||||||||||||||||||| ||||||||  ||||| |    
T  5754252 ttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcatccctccgaattgtttttccttctatcctagttgaataaatgattt-c 5754350  T
Q  774 acatatttt 782  Q
    |||||||||    
T  5754351 acatatttt 5754359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 22597099 - 22597206
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| ||||||| ||| || |||| || |||||||||||||| |||||| | ||| |||||||||||||||||||||||||||| |||||| ||||| |    
T  22597099 ttctttttcttgtcagaggggtgatttaaggtcaattttgacccaaaaatcatccctccgagttgtttttccttctatcctaattaaataagtgattt-c 22597197  T
Q  774 acatatttt 782  Q
    |||||||||    
T  22597198 acatatttt 22597206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 649 - 783
Target Start/End: Original strand, 36867943 - 36868080
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgtt---agatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttc 744  Q
    |||| ||||||||| || |||||||| |||||||||| ||   ||| || |||| ||||||||||||||||  |||||| ||||| | || |||||||||    
T  36867943 cttctcaaaccctagccgtcaccattctcttcttcttctttctagaggggtgatttagggtcaattttgactcaaaaatcacccctctgaattgtttttc 36868042  T
Q  745 cttctatcctaattgaataagcgatttccacatattttc 783  Q
    ||||||| |||||| |||||||||||| |||||||||||    
T  36868043 cttctattctaattcaataagcgattt-cacatattttc 36868080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 704 - 790
Target Start/End: Complemental strand, 17268252 - 17268166
Alignment:
Q  704 ggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagttttt 790  Q
    |||||||||||||| |||||| | |||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  17268252 ggtcaattttgacccaaaaatcatcccttcgagttgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttt 17268166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 675 - 764
Target Start/End: Original strand, 32015184 - 32015274
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataa 764  Q
    |||||||| |||||||| || |||| ||||||||||||||||| |||||| ||||| ||||||||||||||||| |||| ||||| |||||    
T  32015184 ttcttctttttgttagaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttatatcataattcaataa 32015274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 703 - 789
Target Start/End: Complemental strand, 34963194 - 34963109
Alignment:
Q  703 gggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||||||| |||| | || ||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||    
T  34963194 gggtcaattttgacctaaaaatcaccctctgatttgtttttccttctaccctaattgaataagtgattt-cacattttttctgtttt 34963109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 788
Target Start/End: Complemental strand, 13879171 - 13879050
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgttt--------ttccttctatcctaattgaataag 765  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||| || ||| ||||| |||||||||||        ||||||||||||||||||||||||    
T  13879171 ttcttcttcttgtcagagggatgatttagggtcaattttgacccaataatcacccctccgagttgttttttttttcttccttctatcctaattgaataag 13879072  T
Q  766 cgatttccacatattttcagttt 788  Q
     ||||| ||||||||||| ||||    
T  13879071 tgattt-cacatattttctgttt 13879050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 788
Target Start/End: Complemental strand, 14019296 - 14019175
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgttt--------ttccttctatcctaattgaataag 765  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||| || ||| ||||| |||||||||||        ||||||||||||||||||||||||    
T  14019296 ttcttcttcttgtcagagggatgatttagggtcaattttgacccaataatcacccctccgagttgttttttttttcttccttctatcctaattgaataag 14019197  T
Q  766 cgatttccacatattttcagttt 788  Q
     ||||| ||||||||||| ||||    
T  14019196 tgattt-cacatattttctgttt 14019175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 732 - 789
Target Start/End: Complemental strand, 17767651 - 17767594
Alignment:
Q  732 cgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  17767651 cgagttgtttttccttatatcctaattaaataagtgatttccacatattttcagtttt 17767594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 31908973 - 31908859
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||| | |||||| ||||  |||| |||||||| ||| ||||||| ||||||||| ||||| |    
T  31908973 ttcttcttctttttagagggatgatttagagtcaattttgatccaaaaatcacccttccgaattgttttttcttttatcctagttgaataagtgattt-c 31908875  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  31908874 acatattttctgtttt 31908859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 696 - 789
Target Start/End: Complemental strand, 20561268 - 20561175
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| ||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| ||| ||||||| | ||| ||||||||||| |||||    
T  20561268 tgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccaaatcgaataagtggttt-cacatattttctgtttt 20561175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 783
Target Start/End: Complemental strand, 4604464 - 4604356
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||| || | ||| || |||| || |||||||||||||| ||||||||| |   |||||||||||||||||||| ||||||||||||| ||||| |    
T  4604464 ttcttctttttatcagaagggtgatttaaggtcaattttgacccaaaaattactcattcgagttgtttttccttctattctaattgaataagtgattt-c 4604366  T
Q  774 acatattttc 783  Q
    ||||||||||    
T  4604365 acatattttc 4604356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 9690130 - 9690023
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| || |||| || |||||| ||||||| |||||| ||||| ||||  ||||||||||||||||||||||||||||| ||| | |    
T  9690130 ttcttcttcttttcagaggggtgatttaaggtcaaatttgacccaaaaatcacccctccgaactgtttttccttctatcctaattgaataagtgatct-c 9690032  T
Q  774 acatatttt 782  Q
    |||||||||    
T  9690031 acatatttt 9690023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 694 - 789
Target Start/End: Original strand, 35333488 - 35333583
Alignment:
Q  694 gatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||| |||| |||||||||||| |||||| |||||   || ||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||    
T  35333488 gatgatttaggatcaattttgacccaaaaatcacccctaagaattgtttttcctgctatcctaattgaataagtgattt-cacatattttctgtttt 35333583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 687 - 789
Target Start/End: Complemental strand, 18089537 - 18089435
Alignment:
Q  687 ttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcag 785  Q
    ||||| || |||| ||||||||||||||| | |||||| || || |||| |||||||| ||| ||||||||||||||||| ||||| ||||||||||| |    
T  18089537 ttagaggggtgatttagggtcaattttgatccaaaaatcactcctccgaattgttttttcttatatcctaattgaataagtgattt-cacatattttctg 18089439  T
Q  786 tttt 789  Q
    ||||    
T  18089438 tttt 18089435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 38535462 - 38535348
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| || |||| ||||||||||||||||| |||||  |||||   || || |||||||||||||| |||||||||||| ||||| |    
T  38535462 ttcttcttcttttcagaggggtgatttagggtcaattttgacccaaaaagcacccctttgaattttttttccttctatcataattgaataagtgattt-c 38535364  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  38535363 acatattttctgtttt 38535348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 789
Target Start/End: Complemental strand, 6431483 - 6431430
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||| ||| |||||| |||||| |||||||||||||||||||||||    
T  6431483 ttgtttttccttatattctaattaaataagtgatttccacatattttcagtttt 6431430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 709 - 789
Target Start/End: Complemental strand, 13740783 - 13740703
Alignment:
Q  709 attttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||| |||||| ||| | |||| |||||||||||||||||||||||||||||| ||||| || |||||||| |||||    
T  13740783 attttgacccaaaaatcaccactccgaattgtttttccttctatcctaattgaataagtgattt-catatattttctgtttt 13740703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 731 - 789
Target Start/End: Complemental strand, 4426758 - 4426701
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||||||||||||||||||||||||  ||||| ||||||||||| |||||    
T  4426758 ccgatttgtttttccttctatcctaattgaataaatgattt-cacatattttctgtttt 4426701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 452
Target Start/End: Complemental strand, 14441174 - 14441108
Alignment:
Q  387 tacaataatc-cttattgtatcgaaattttataatagtttttgattattcattttgttaatcaaaat 452  Q
    |||||||||| || ||||||||||||||||| |||||| | ||||||| |||| |||||||||||||    
T  14441174 tacaataatctctcattgtatcgaaattttaaaatagtatatgattatgcattatgttaatcaaaat 14441108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 772
Target Start/End: Complemental strand, 38384590 - 38384501
Alignment:
Q  684 ttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||||||| || |||| | ||||||||||||||| |||||| ||  | |||| |||||||||||| || |||||||||||||| ||||||    
T  38384590 ttgttagaggggtgattttgggtcaattttgacccaaaaatcacatctccgatttgtttttccttataccctaattgaataagtgatttc 38384501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 790
Target Start/End: Original strand, 4739316 - 4739408
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagttttt 790  Q
    |||| |||||||||||  ||||  ||||| ||||| |||||||||||||||||| ||||||||| ||||||  |||| ||||||||||| ||||||    
T  4739316 tgatttagggtcaatt--gaccccaaaatcacccctccgagttgtttttccttccatcctaattaaataagtaattt-cacatattttctgttttt 4739408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 789
Target Start/End: Complemental strand, 10287135 - 10287049
Alignment:
Q  702 agggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||||| ||||||| ||||| |||| |||  ||| ||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  10287135 agggtcaattttgacataaaaatcacccctccgaattgcattt-cttttatcctaattgaataagtgattt-cacatattttctgtttt 10287049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 758
Target Start/End: Complemental strand, 28262049 - 28261966
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattac-cccccgagttgtttttccttctatcctaatt 758  Q
    ||||||||||| | |||||| |||| ||||||||||||||||| |||||| || |  |||| ||||||||||||||||| |||||    
T  28262049 ttcttcttctt-tcagatgggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctatcataatt 28261966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 704 - 789
Target Start/End: Complemental strand, 9978797 - 9978712
Alignment:
Q  704 ggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||| |||||| |||||  | | |||||||||||| |||| |||||||||||  ||||| ||||||||||| |||||    
T  9978797 ggtcaattttgacccaaaaatcaccccttcaaattgtttttccttttatcttaattgaataaatgattt-cacatattttctgtttt 9978712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 735 - 789
Target Start/End: Complemental strand, 11798613 - 11798559
Alignment:
Q  735 gttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||| |||||||||| ||||||  ||||||||||||||| ||||||    
T  11798613 gttgcttttccttatatcctaattaaataagtaatttccacatatttttagtttt 11798559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 32314463 - 32314520
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||| ||||||||||||||||||||  ||||| ||||||||||| |||||    
T  32314463 ccgaattgttttttcttctatcctaattgaataaatgattt-cacatattttctgtttt 32314520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 789
Target Start/End: Original strand, 17792499 - 17792552
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||| |||| | ||| || |||||||||||| |||||||||||||||||    
T  17792499 ttgtttttctttctcttctagttaaataagcgattttcacatattttcagtttt 17792552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 6101 - 6215
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| || |||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |    
T  6101 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-c 6199  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  6200 acatattttctgtttt 6215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 424448 - 424334
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| || |||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |    
T  424448 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-c 424350  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  424349 acatattttctgtttt 424334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 673 - 789
Target Start/End: Original strand, 14265246 - 14265362
Alignment:
Q  673 ttttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    |||| |||||||||| |||||| |||| ||||||||||||||||  |||||| ||||| ||||| |||||||||||||||||||||| |||||| |||||    
T  14265246 tttttttcttcttgtcagatgggtgatttagggtcaattttgacaaaaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt 14265345  T
Q  772 ccacatattttcagtttt 789  Q
     ||||||||||| |||||    
T  14265346 -cacatattttctgtttt 14265362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 3232752 - 3232866
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | |||||| |||| ||||||||||||||| | |||||| ||||| |||| |||||||||||||||||||||||||||||  ||||| |    
T  3232752 ttcttcttcttttcagatgggtgatttagggtcaattttgatcaaaaaatcacccctccgaattgtttttccttctatcctaattgaataaatgattt-c 3232850  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  3232851 acatattttctgtttt 3232866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 27534663 - 27534777
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatta-ccccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||| |||||| | ||| |||| ||||||||||||||| | |||||||||||| ||||| |    
T  27534663 ttcttcttcttgtcagagggatgatttagggtcaattttgacccaaaaatcatccctccgatttgtttttccttctaccttaattgaataagtgattt-c 27534761  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  27534762 acatattttctgtttt 27534777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 7995718 - 7995603
Alignment:
Q  675 ttcttcttcttgtt-agatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| || ||| || |||| ||||||||||||||||| |||||| ||| | |||| |||||||||||||||||||||||||||||| |||||     
T  7995718 ttcttcttctttttcagaggggtgatttagggtcaattttgacccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattt- 7995620  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  7995619 cacatattttctgtttt 7995603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 674 - 789
Target Start/End: Original strand, 12871584 - 12871699
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||| |||| ||| ||| || |||| ||||||||||||||||| |||||| ||||| |||||||||||||| || ||||||||| ||||||| |||||     
T  12871584 tttctccttcgtgtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttcattatatcctaatcgaataagtgattt- 12871682  T
Q  773 cacatattttcagtttt 789  Q
    |||||||||||||||||    
T  12871683 cacatattttcagtttt 12871699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 674 - 789
Target Start/End: Original strand, 32784071 - 32784186
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||||||||||| | | | || |||| ||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||| |||||||||| |||||     
T  32784071 tttcttcttcttttcaaaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccttattgaataagtgattt- 32784169  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  32784170 cacatattttctgtttt 32784186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 42490857 - 42490971
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| |||  | |||| ||||||||| |||||||||||||| ||||| |||| ||||||||| ||||||| |||||||||||| ||||| |    
T  42490857 ttcttcttcttgtcagagaggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgattt-c 42490955  T
Q  774 acatattttcagtttt 789  Q
    |||||| |||||||||    
T  42490956 acatatcttcagtttt 42490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 675 - 772
Target Start/End: Complemental strand, 33487187 - 33487089
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| | ||| || |||| ||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||| | ||||||    
T  33487187 ttcttcttcttttcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaatatgtgatttc 33487089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 17347563 - 17347676
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||  ||||||||||||| |||||||| |||  ||||||| ||||| |    
T  17347563 ttcttcttcttgtcagatggatgatttagggtcaattttgacc-aaaaatcacccatccgagttgttttttcttctatcataaaggaataagtgattt-c 17347660  T
Q  774 acatattttcagtttt 789  Q
    |||| ||||| |||||    
T  17347661 acatcttttctgtttt 17347676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 676 - 789
Target Start/End: Original strand, 29205250 - 29205363
Alignment:
Q  676 tcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcca 774  Q
    |||||||||| ||||| || |||| ||||||||||||||||| |||||| |||||   || ||||||||||||||||| |||||||||||| ||||| ||    
T  29205250 tcttcttctttttagacgggtgatttagggtcaattttgacccaaaaatcaccccttggaattgtttttccttctatcataattgaataagtgattt-ca 29205348  T
Q  775 catattttcagtttt 789  Q
     |||||||| |||||    
T  29205349 tatattttctgtttt 29205363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 675 - 788
Target Start/End: Complemental strand, 45193783 - 45193670
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgttttt-ccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| ||  ||| ||||||||||||| ||| || |||  ||| ||||||||||||| |||||||||||||||||||||| ||||| |    
T  45193783 ttcttcttcttgtcagaggggcgatttagggtcaattttaacccaataatacccctccgagttgttttttccttctatcctaattgaataagtgattt-c 45193685  T
Q  774 acatattttcagttt 788  Q
    |||||||||| ||||    
T  45193684 acatattttccgttt 45193670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 28678287 - 28678180
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattac-cccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| ||||||||||||||||| |||||| || |  |||| ||||||||| ||||||| |||||||||||| ||||| |    
T  28678287 ttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcactcgtccgaattgtttttcgttctatcataattgaataagtgattt-c 28678189  T
Q  774 acatatttt 782  Q
    |||||||||    
T  28678188 acatatttt 28678180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 4882516 - 4882402
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||||||  ||| ||| |||||||| |||| |||||| ||||| |||| ||||||||| || ||||||||||||||||| ||||| |    
T  4882516 ttcttcttcttttcagatgggcgatttagagtcaatttcgacccaaaaatcacccctccgatttgtttttcattatatcctaattgaataagtgattt-c 4882418  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  4882417 acatattttctgtttt 4882402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 20411537 - 20411651
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| |||||||| |||| || |||||||||||||| |||||| ||||  |||| ||||||||| || ||| | ||||||||||| ||||| |    
T  20411537 ttcttcttctttttagatgggtgatttatggtcaattttgacccaaaaatcacccatccgaattgtttttctttttattcaaattgaataagtgattt-c 20411635  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  20411636 acatattttctgtttt 20411651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 706 - 783
Target Start/End: Complemental strand, 37822471 - 37822394
Alignment:
Q  706 tcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttccacatattttc 783  Q
    |||||||||||| |||||||||||  | || |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  37822471 tcaattttgacccaaaaattacccttctgaattgtttttccttctatcctaattgaataagtgattt-cacatattttc 37822394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 696 - 789
Target Start/End: Complemental strand, 9298549 - 9298457
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| ||||||||||||||| | |||  | |||| ||||||||||||||||||||||||| || |||||  ||||||||| |||||| ||||||    
T  9298549 tgatttagggtcaattttgaaccaaag-tcaccctccgagttgtttttccttctatcctagttaaataattgatttccacgtattttaagtttt 9298457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 8234384 - 8234312
Alignment:
Q  385 gttacaataatccttattgtatcgaaattttataatagtttttgattattcattttgttaatcaaaataatct 457  Q
    |||||||||||||| | | |||| |||||||| |||||||||| ||| | |||| ||||||||||||||||||    
T  8234384 gttacaataatcctcaatatatcaaaattttaaaatagtttttaattgtgcattctgttaatcaaaataatct 8234312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 674 - 765
Target Start/End: Complemental strand, 15791646 - 15791554
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataag 765  Q
    ||||||||||||||  || || |||| |||| |||||||||||  |||||| || |  ||||||||||||||||| |||| ||||||||||||    
T  15791646 tttcttcttcttgtcggagggctgatttaggatcaattttgacacaaaaatcactcatccgagttgtttttccttatatcttaattgaataag 15791554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 654 - 789
Target Start/End: Original strand, 42276300 - 42276434
Alignment:
Q  654 caaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatc 752  Q
    |||||||||  | ||||| ||||||||||||| | ||| || |||| |||||| | |||||| |  ||||| ||||| |||| |||||||| ||||||||    
T  42276300 caaaccctagtcgtcacccttttcttcttcttttcagaggggtgatttagggttatttttga-cacaaaatcacccctccgaattgttttttcttctatc 42276398  T
Q  753 ctaattgaataagcgatttccacatattttcagtttt 789  Q
     ||||| |||||  ||||| |||||||||||||||||    
T  42276399 ataattaaataactgattt-cacatattttcagtttt 42276434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 731 - 783
Target Start/End: Original strand, 44517168 - 44517219
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttc 783  Q
    |||| ||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  44517168 ccgaattgtttttccttctatcctaattcaataagtgattt-cacatattttc 44517219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 789
Target Start/End: Original strand, 51418037 - 51418091
Alignment:
Q  733 gagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||    
T  51418037 gagttgtttttccttctatcctaattgaa-aagtgattt-cacatattttctgtttt 51418091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 18343578 - 18343692
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| || |||| ||| || |||| |||| |||||||||||| |||||| |||||  ||| ||||||||||||||| | ||||| ||| || ||||| |    
T  18343578 ttcttgttgttgtcagaggggtgatttaggatcaattttgacccaaaaatcaccccttcgatttgtttttccttctaccttaattaaatgagtgattt-c 18343676  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  18343677 acatattttctgtttt 18343692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 10627021 - 10627078
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||| || |||||||||||||||||  |||| ||||||||||| |||||    
T  10627021 ccgagttgtttttctttatatcctaattgaataagtaattt-cacatattttctgtttt 10627078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 25255908 - 25255945
Alignment:
Q  404 tatcgaaattttataatagtttttgattattcattttg 441  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  25255908 tatcgaaattttaaaatagtttttgattatgcattttg 25255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 465
Target Start/End: Original strand, 35607217 - 35607262
Alignment:
Q  420 tagtttttgattattcattttgttaatcaaaataatctatgacgtt 465  Q
    |||||||||||| | ||||| |||| ||||||||||||||||||||    
T  35607217 tagtttttgattgtgcatttcgttagtcaaaataatctatgacgtt 35607262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 9e-29; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 675 - 783
Target Start/End: Original strand, 24825613 - 24825721
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||||||| || |||| |||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||| |    
T  24825613 ttcttcttcttgttagaggggtgatttaggatcaattttgacctaaaaatcactcctccgagttgtttttccttctatcctaattgaataagtgattt-c 24825711  T
Q  774 acatattttc 783  Q
    ||||||||||    
T  24825712 acatattttc 24825721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 674 - 789
Target Start/End: Complemental strand, 29268935 - 29268820
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||||||||||||| ||| || |||| || ||||||||||||||  ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||     
T  29268935 tttcttcttcttgtcagaggggtgatttaaggtcaattttgaccctaaaatcacccctccgagttgtttttccttttatcctaattgaataagtgattt- 29268837  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  29268836 cacatattttctgtttt 29268820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 649 - 788
Target Start/End: Complemental strand, 478194 - 478056
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttc 748  Q
    |||| ||||||||| || |||||  |||||||||||| ||||| || |||| || |||||||||||||| |||||| |||  |||| ||||||||||||     
T  478194 cttctcaaaccctagccgtcacccctttcttcttctttttagaggggtgatttatggtcaattttgacccaaaaatcaccatccgaattgtttttcctta 478095  T
Q  749 tatcctaattgaataagcgatttccacatattttcagttt 788  Q
    ||||||||||||||||| |||||  |||||||||| ||||    
T  478094 tatcctaattgaataagtgattt-tacatattttctgttt 478056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 696 - 772
Target Start/End: Original strand, 31521967 - 31522044
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||| |||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  31521967 tgatttagggtcaattttgacctaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 31522044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 675 - 783
Target Start/End: Complemental strand, 43244538 - 43244430
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||| || ||||| || |||| ||||||||||||||||| |||||| ||||| | || |||||||||||||||||||||||||||||| ||||| |    
T  43244538 ttcttcttttttttagaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttccttctatcctaattgaataagtgattt-c 43244440  T
Q  774 acatattttc 783  Q
    ||||||||||    
T  43244439 acatattttc 43244430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 6911644 - 6911758
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacc-ccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||||||| || |||| ||||||||||||||| | |||||| ||| | |||| ||||||||||||||| | |||||||||||| ||||| |    
T  6911644 ttcttcttcttgttagaggggtgatttagggtcaattttgatccaaaaatcacctctccgatttgtttttccttctaccttaattgaataagtgattt-c 6911742  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  6911743 acatattttctgtttt 6911758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 649 - 782
Target Start/End: Original strand, 22757029 - 22757165
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgtt---agatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttc 744  Q
    |||| ||||||||| || ||||| ||||||||||||| ||   ||| || |||| ||||||||||||||||  |||||| ||| | |||| |||||||||    
T  22757029 cttctcaaaccctagccgtcacccttttcttcttcttcttttcagaggggtgatttagggtcaattttgactcaaaaatcaccactccgaattgtttttc 22757128  T
Q  745 cttctatcctaattgaataagcgatttccacatatttt 782  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  22757129 cttctatcctaattgaataagtgattt-cacatatttt 22757165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 736 - 789
Target Start/End: Complemental strand, 22049500 - 22049447
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22049500 ttgtttttccttctatcctaattgaataagtgatttccacatattttcagtttt 22049447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 667 - 782
Target Start/End: Original strand, 7060280 - 7060395
Alignment:
Q  667 tcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataag 765  Q
    ||||| |||| |||||||| | ||| || | || ||||||||||||| ||| |||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  7060280 tcaccttttttttcttcttttcagaggggtaatttagggtcaattttaacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataag 7060379  T
Q  766 cgatttccacatatttt 782  Q
     ||||| ||||||||||    
T  7060380 tgattt-cacatatttt 7060395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 26674336 - 26674443
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | |||||| |||| |||| ||||||||||||||||||| ||||| || | ||| ||||||||||||| |||||||||||| ||||| |    
T  26674336 ttcttcttcttttcagatgggtgatttaggatcaattttgacctaaaaatcacccctccaaattgcttttccttctatcataattgaataagtgattt-c 26674434  T
Q  774 acatatttt 782  Q
    |||||||||    
T  26674435 acatatttt 26674443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 678 - 789
Target Start/End: Complemental strand, 26742617 - 26742506
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||| |||||||| |||| |||| |||||||||||| |||||| ||||  |||| ||||||||| ||||||| |||||||||||| ||||| ||||    
T  26742617 ttcttctttttagatgggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgattt-caca 26742519  T
Q  777 tattttcagtttt 789  Q
    ||||||| |||||    
T  26742518 tattttctgtttt 26742506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 678 - 772
Target Start/End: Complemental strand, 394428 - 394333
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||||||| || || || |||| ||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| ||||||    
T  394428 ttcttctttttggaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattcaataagtgatttc 394333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 20400060 - 20399946
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| ||  ||| ||||||||||||||||| |||||| |||| ||||| ||| |||| ||||||||||||||||||||| ||||| |    
T  20400060 ttcttcttctttttagaagggcgatttagggtcaattttgacccaaaaatcacccacccgaattgctttttcttctatcctaattgaataagtgattt-c 20399962  T
Q  774 acatattttcagtttt 789  Q
    | |||||||| |||||    
T  20399961 atatattttctgtttt 20399946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 677 - 782
Target Start/End: Complemental strand, 44757197 - 44757092
Alignment:
Q  677 cttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttccac 775  Q
    ||||||||| | ||| || |||| || |||||||||||||| |||||| ||||   |||||||||||||||||||||||||||||||||| ||||| |||    
T  44757197 cttcttcttatcagaggggtgatttaaggtcaattttgacccaaaaatcacccattcgagttgtttttccttctatcctaattgaataagtgattt-cac 44757099  T
Q  776 atatttt 782  Q
    |||||||    
T  44757098 atatttt 44757092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 783
Target Start/End: Complemental strand, 7083973 - 7083865
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | |||||||| || ||||||||||||||| | |||||| |||||   || ||||||||||||||||| |||||||||||| ||||| |    
T  7083973 ttcttcttcttttcagatggataatttagggtcaattttgatccaaaaatcacccctatgaattgtttttccttctatcataattgaataagtgattt-c 7083875  T
Q  774 acatattttc 783  Q
    ||||||||||    
T  7083874 acatattttc 7083865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 674 - 790
Target Start/End: Complemental strand, 7861363 - 7861247
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacc-ccccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||||||||||||| |||||| |||| |||  |||||||||||| |||||| ||| | | || || |||||||||||||||||||| |||||| |||||     
T  7861363 tttcttcttcttgtcagatgggtgatttagaatcaattttgacccaaaaatcaccactctgaattatttttccttctatcctaattaaataagtgattt- 7861265  T
Q  773 cacatattttcagttttt 790  Q
    ||||||||||| ||||||    
T  7861264 cacatattttctgttttt 7861247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 696 - 772
Target Start/End: Original strand, 13965545 - 13965622
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||| ||||||||||||||||| |||||| |||||  ||| |||||||||||||||||||||||||||||| ||||||    
T  13965545 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcctaattgaataagtgatttc 13965622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 30202002 - 30202116
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| || |||| || |||||||||||| | |||||| |||||  | |||||||||||||| |||| |||||||||||| ||||| |    
T  30202002 ttcttcttcttgtcagaggggtgatttaaggtcaattttgatccaaaaatcaccccttctagttgtttttccttttatcttaattgaataagtgattt-c 30202100  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  30202101 acatattttctgtttt 30202116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 731 - 789
Target Start/End: Complemental strand, 12717218 - 12717160
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  12717218 ccgacttgttttttcttctatcctaattaaataagtgatttccacatattttcagtttt 12717160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 675 - 783
Target Start/End: Original strand, 29922798 - 29922909
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttg---tttttccttctatcctaattgaataagcgatt 770  Q
    ||||||||||||| |||  | |||| |||||||||||||||||||| ||| ||||| || |||||   |||||| |||||||||||||||||||| ||||    
T  29922798 ttcttcttcttgtcagagaggtgatttagggtcaattttgacctaataatcacccctccaagttgttttttttctttctatcctaattgaataagtgatt 29922897  T
Q  771 tccacatattttc 783  Q
    | |||||||||||    
T  29922898 t-cacatattttc 29922909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 687 - 783
Target Start/End: Original strand, 24100115 - 24100211
Alignment:
Q  687 ttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttc 783  Q
    ||||| || |||| |||| |||||||||| | |||||||||||  |||| ||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  24100115 ttagaggggtgatttaggatcaattttgaaccaaaaattacccatccgaattgtttttccttctatcgtaattgaataagtgattt-cacatattttc 24100211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 771
Target Start/End: Complemental strand, 24568870 - 24568773
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    ||||||||||| | ||| || |||| |||||| |||||||||| |||||| ||||  |||| || ||||||||||||||||||||||||||| |||||    
T  24568870 ttcttcttcttttcagaggggtgatttagggtgaattttgacccaaaaatcacccttccgaattatttttccttctatcctaattgaataagtgattt 24568773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 696 - 783
Target Start/End: Original strand, 51152110 - 51152197
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttc 783  Q
    |||| || ||||||| |||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  51152110 tgatttanggtcaatattgacccaaaaatcacccctccgaattgtttttccttctatcctaatttaataagtgattt-cacatattttc 51152197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 8712494 - 8712601
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||| | || |||| ||||||||||||||||| |||||| ||||| |  | |||||||||||||||||||| |||| |||| ||||| |    
T  8712494 ttcttcttctttttacaggggtgatttagggtcaattttgacccaaaaatcacccctcataattgtttttccttctatcctagttgagtaagtgattt-c 8712592  T
Q  774 acatatttt 782  Q
    |||||||||    
T  8712593 acatatttt 8712601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 5814311 - 5814425
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||||||   | |||| ||||||||||||||| | |||||| | ||| || ||||||||| ||||||||| ||||||||||||  |||| |    
T  5814311 ttcttcttcttgttagggaggtgatttagggtcaattttgatccaaaaatcatccctccaagttgttttcccttctatcttaattgaataagttattt-c 5814409  T
Q  774 acatattttcagtttt 789  Q
    ||||||||| ||||||    
T  5814410 acatatttttagtttt 5814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 781
Target Start/End: Complemental strand, 11210470 - 11210364
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||||||  |||| || |||| |||||||||||||| ||||||||| ||||| |||| || |||||||| | ||| |||||||||||| ||||| |    
T  11210470 ttcttcttctttgtagaggggtgatttagggtcaattttgccctaaaaatcacccctccgaattatttttcctcccatcataattgaataagtgattt-c 11210372  T
Q  774 acatattt 781  Q
    ||||||||    
T  11210371 acatattt 11210364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 25658131 - 25658245
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| |||||| |||||||||  |||||| ||| | || | |||||||||||||| |||||||| |||||| ||||| |    
T  25658131 ttcttcttctttttagaggggtgatttagggttaattttgactcaaaaatcacctctccaaattgtttttccttctttcctaatttaataagtgattt-c 25658229  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  25658230 acatattttctgtttt 25658245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 731 - 785
Target Start/End: Original strand, 3159063 - 3159117
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcag 785  Q
    |||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||    
T  3159063 ccgagttgtttttccttctatcataattaaataagtgattttcacatattttcag 3159117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 783
Target Start/End: Complemental strand, 24611957 - 24611848
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccga-gttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||||||||||| ||||| || |||| || ||||||||| |||| |||||| ||||| | | ||  |||| |||||||||||||||||||||| |||||     
T  24611957 tttcttcttcttcttagaggggtgatttatggtcaatttagacccaaaaatcacccctctaagtcattttcccttctatcctaattgaataagtgattt- 24611859  T
Q  773 cacatattttc 783  Q
    |||||||||||    
T  24611858 cacatattttc 24611848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 39837558 - 39837673
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgttttt-ccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| | ||| || |||| ||| ||||||||||||| |||||| |||||  ||| || ||||| |||| ||||||||||||||||| |||||     
T  39837558 ttcttcttcttttcagaggggtgatttagcgtcaattttgacccaaaaatcaccccttcgatttttttttcccttttatcctaattgaataagtgattt- 39837656  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  39837657 cacatattttctgtttt 39837673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 765
Target Start/End: Original strand, 27394794 - 27394885
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataag 765  Q
    ||||||||||| | | | || |||| ||||||||||||||||| |||||| ||||  |||  || |||||||||||||||||||||||||||    
T  27394794 ttcttcttcttttcacaggggtgatttagggtcaattttgacccaaaaatcacccttccggattatttttccttctatcctaattgaataag 27394885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 701 - 782
Target Start/End: Complemental strand, 38944278 - 38944197
Alignment:
Q  701 tagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||||||||||||| || |||||| ||||| || | ||||||||||||||||| || ||||||||| ||||| ||||||||||    
T  38944278 tagggtcaattttggcccaaaaatcacccctccaaattgtttttccttctatcgtagttgaataagtgattt-cacatatttt 38944197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 708 - 789
Target Start/End: Original strand, 50801214 - 50801295
Alignment:
Q  708 aattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||| |||||||| || || |||| || ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  50801214 aattttgatctaaaaataactcctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttt 50801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 732 - 789
Target Start/End: Original strand, 6881978 - 6882034
Alignment:
Q  732 cgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||| |||||||||||||||||||| |||||| ||||| ||||||||||| |||||    
T  6881978 cgagttatttttccttctatcctaattaaataagtgattt-cacatattttctgtttt 6882034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 770
Target Start/End: Original strand, 7084170 - 7084266
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatta-ccccccgagttgtttttccttctatcctaattgaataagcgatt 770  Q
    |||||||| |||| ||| || |||| |||| |||||||||||| ||||||||  |  |||| ||||||||||||||| | |||||||||||| ||||    
T  7084170 ttcttcttgttgtcagaggggtgatttaggttcaattttgacccaaaaattatgcttccgatttgtttttccttctaccttaattgaataagtgatt 7084266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 741 - 789
Target Start/End: Original strand, 27090755 - 27090803
Alignment:
Q  741 tttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||| ||||    
T  27090755 tttccttctatcctaatcgaataagtgatttccacgtattttcattttt 27090803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 782
Target Start/End: Complemental strand, 43493387 - 43493337
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||| ||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  43493387 ccgaattgtttttccttctatcttaattgaataagtgattt-cacatatttt 43493337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 789
Target Start/End: Original strand, 39523435 - 39523487
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||    
T  39523435 ttgtttttccttttatcctaattgaataagtgattt-cacatgttttctgtttt 39523487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 9e-29; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 654 - 782
Target Start/End: Complemental strand, 53155616 - 53155488
Alignment:
Q  654 caaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatc 752  Q
    |||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||| |||||| ||||   ||| |||||||||||| ||||    
T  53155616 caaaccctaaccatcaccattttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcacccattcgaattgtttttccttatatc 53155517  T
Q  753 ctaattgaataagcgatttccacatatttt 782  Q
    |||||| |||||| ||||| ||||||||||    
T  53155516 ctaattcaataagtgattt-cacatatttt 53155488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 675 - 788
Target Start/End: Complemental strand, 36691964 - 36691851
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||| |||||||| ||| || |||| ||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||| |    
T  36691964 ttctccttcttgtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttatttttccttctatcctaattgaataagtgattt-c 36691866  T
Q  774 acatattttcagttt 788  Q
    |||||||||| ||||    
T  36691865 acatattttctgttt 36691851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 667 - 782
Target Start/End: Original strand, 31270279 - 31270397
Alignment:
Q  667 tcaccattttcttctt---cttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaat 762  Q
    ||||||||||||||||   ||| |||||||| |||| ||||||||||||||||| |||||| |||||  ||| || ||||||||||||||||||||||||    
T  31270279 tcaccattttcttcttattctttttagatgggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaat 31270378  T
Q  763 aagcgatttccacatatttt 782  Q
    ||| ||||| ||||||||||    
T  31270379 aagtgattt-cacatatttt 31270397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 32080919 - 32080805
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||| |||| |||||| |||| ||||||||||||||||| |||||| ||||| |||| ||||||||||||||| | |||||||||| | ||||| |    
T  32080919 ttcttcttgttgtcagatgggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataggtgattt-c 32080821  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  32080820 acatattttctgtttt 32080805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 48652605 - 48652491
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| || |||| ||||||||| ||||||| |||||| ||||| |||| ||||||||||||||| | |||||||||||| ||||| |    
T  48652605 ttcttcttcttgtcagaggggtgatttagggtcaactttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgattt-c 48652507  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  48652506 acatattttctgtttt 48652491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 667 - 789
Target Start/End: Complemental strand, 31462922 - 31462797
Alignment:
Q  667 tcaccattttcttcttcttgtt---agatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaat 762  Q
    ||||||||||||||||||| ||   ||| || |||| ||||||||||||||||| |||||| |||||  ||| |||||||||||| ||||||||||||||    
T  31462922 tcaccattttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaat 31462823  T
Q  763 aagcgatttccacatattttcagtttt 789  Q
    ||| |||||  |||||||||| |||||    
T  31462822 aagtgattt-tacatattttctgtttt 31462797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 27783607 - 27783686
Alignment:
Q  17 agatagtactccacgatttacaaaggatacgagaacttgttacaaatgatgcaagctcaattccactgcaaaatctgcaa 96  Q
    |||||| | |||| |||||||||||||||| ||||||||||||||| |||||||| || |||||||||| ||||||||||    
T  27783607 agatagaagtccatgatttacaaaggatactagaacttgttacaaaagatgcaagttcgattccactgctaaatctgcaa 27783686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 673 - 782
Target Start/End: Complemental strand, 49628255 - 49628145
Alignment:
Q  673 ttttcttcttcttgttagatggatgatcta-gggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatt 770  Q
    ||||||||||||| ||||| || |||| |  |||||||||||||||||||||| ||||| | || |||||||||||||||||||| ||||||||| ||||    
T  49628255 ttttcttcttctttttagaggggtgatttttgggtcaattttgacctaaaaatcacccctctgaattgtttttccttctatcctagttgaataagtgatt 49628156  T
Q  771 tccacatatttt 782  Q
    | ||||||||||    
T  49628155 t-cacatatttt 49628145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 675 - 770
Target Start/End: Complemental strand, 1075058 - 1074962
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatt 770  Q
    ||||||||||||| ||| || |||| || |||||||||||||| |||||| ||||  ||||||||||||||||| ||| ||||||||||||| ||||    
T  1075058 ttcttcttcttgtcagaggggtgatttatggtcaattttgacccaaaaatcacccatccgagttgtttttccttatattctaattgaataagtgatt 1074962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 733 - 789
Target Start/End: Original strand, 2147749 - 2147805
Alignment:
Q  733 gagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  2147749 gagttggttttcgttctatcctaattgaataagtgatttccacatattttcagtttt 2147805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 696 - 782
Target Start/End: Original strand, 11819068 - 11819154
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||| ||||||||||||||||| |||||| ||||| |||| ||||||||||||||| | |||||||||||| ||||| ||||||||||    
T  11819068 tgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgattt-cacatatttt 11819154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 676 - 789
Target Start/End: Original strand, 14585427 - 14585540
Alignment:
Q  676 tcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgag-ttgtttttccttctatcctaattgaataagcgatttcca 774  Q
    |||||||||| | ||| || |||| ||| ||||||||||||| |||||| || || | |  |||||||||||||||||||||||||||||| ||||| ||    
T  14585427 tcttcttcttttcagaggggtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttttccttctatcctaattgaataagtgattt-ca 14585525  T
Q  775 catattttcagtttt 789  Q
    ||||||||| |||||    
T  14585526 catattttctgtttt 14585540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 771
Target Start/End: Original strand, 3456907 - 3457004
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    ||||||||||| | ||| || |||| || |||||||||||| | |||||| ||| | |||| |||||||||||||||||||||||||||||| |||||    
T  3456907 ttcttcttcttttcagaggggtgatttatggtcaattttgatccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattt 3457004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 678 - 782
Target Start/End: Complemental strand, 30156443 - 30156340
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||| | ||| || |||| ||||||||||||||||| |||||| ||||| |||| ||||||| |||| ||||||||||||||||| ||||| ||||    
T  30156443 ttcttcttttcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt-ccttttatcctaattgaataagtgattt-caca 30156346  T
Q  777 tatttt 782  Q
    ||||||    
T  30156345 tatttt 30156340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 649 - 789
Target Start/End: Complemental strand, 36624885 - 36624745
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttcctt 747  Q
    |||| |||||||||||  ||||| |||| |||||||| | ||| || ||||  |||||||||  ||||| |||||| ||||  |||| ||||||||||||    
T  36624885 cttctcaaaccctaactgtcacccttttattcttcttttcagaggggtgattcagggtcaatcatgacccaaaaatcacccatccgaattgtttttcctt 36624786  T
Q  748 ctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||| | |||||| ||||| ||||||||||| |||||    
T  36624785 ctatcctaactaaataagtgattt-cacatattttctgtttt 36624745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 13702137 - 13702023
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| || |||| ||||||||||||||||| |||| | |||||  ||| || |||||| ||||||| |||||||||||| ||||| |    
T  13702137 ttcttcttcttttcagaggggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgattt-c 13702039  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  13702038 acatattttctgtttt 13702023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 55090748 - 55090634
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| || |||| |||||| |||||  ||| |||||| ||||| |||| ||||||||||||||| | ||||| |||||| ||||| |    
T  55090748 ttcttcttcttgtcagaggggtgatttagggttaatttcaacccaaaaatcacccctccgatttgtttttccttctaccttaattaaataagtgattt-c 55090650  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  55090649 acatattttctgtttt 55090634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 701 - 782
Target Start/End: Complemental strand, 34960997 - 34960916
Alignment:
Q  701 tagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    ||||||||||||||||| |||||| ||||| | || |||||||| ||||||| ||||||||||||| ||||| ||||||||||    
T  34960997 tagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgattt-cacatatttt 34960916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 731 - 789
Target Start/End: Complemental strand, 54239126 - 54239069
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  54239126 ccgaattgtttttccttctatcctaattgaataagtgattt-cacatattttctgtttt 54239069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 702 - 782
Target Start/End: Original strand, 35174695 - 35174775
Alignment:
Q  702 agggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    ||||||||||| |||| |||||| |||||   || |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35174695 agggtcaatttcgacccaaaaatcacccctttgaattgtttttccttctatcctaattgaataagtgattt-cacatatttt 35174775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 667 - 789
Target Start/End: Complemental strand, 40013450 - 40013323
Alignment:
Q  667 tcaccattttcttcttcttgtt---agatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttcta---tcctaattg 759  Q
    ||||||||||||||||||| ||   |||||| |||| ||| ||||||||||||| |||||| ||||   ||| |||||||||||||||   |||||||||    
T  40013450 tcaccattttcttcttcttcttttcagatgg-tgatttagtgtcaattttgacccaaaaatcacccattcgaattgtttttccttctatcctcctaattg 40013352  T
Q  760 aataagcgatttccacatattttcagtttt 789  Q
    |||||| ||||| ||||||||||| |||||    
T  40013351 aataagtgattt-cacatattttctgtttt 40013323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 771
Target Start/End: Original strand, 53402594 - 53402691
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    ||||||||||| ||| |||  |||| || |||||||||||||| |||||| ||||  |||| |||||||||||||||| |||||| |||||| |||||    
T  53402594 ttcttcttctttttaaatgagtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctattctaattcaataagtgattt 53402691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 4206676 - 4206569
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||| |||| ||||| || |||| || |||||||||||| | |||||| ||||| |||| |||||||||| | ||||||||||||||||| | ||| |    
T  4206676 ttcttcctctttttagaggggtgatttatggtcaattttgatcaaaaaatcacccctccgaattgtttttccatatatcctaattgaataagtg-ttttc 4206578  T
Q  774 acatatttt 782  Q
    |||||||||    
T  4206577 acatatttt 4206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 48400863 - 48400970
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattac-cccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| ||||||||||||||||| |||||| || |  | || ||||||||||||||| |||| || |||||| ||||| |    
T  48400863 ttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcacacatcggaattgtttttccttctaccctattttaataagtgattt-c 48400961  T
Q  774 acatatttt 782  Q
    |||||||||    
T  48400962 acatatttt 48400970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 696 - 790
Target Start/End: Complemental strand, 27189538 - 27189444
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagttttt 790  Q
    |||| ||| ||||||||||| | ||||||||| |  |||| ||||||||||||||||||||||||||||||  |||| |||||| |||| ||||||    
T  27189538 tgatttagagtcaattttgatccaaaaattactcttccgaattgtttttccttctatcctaattgaataagtaattt-cacataatttctgttttt 27189444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 39610168 - 39610283
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgttt--------ttccttctatcctaattgaataag 765  Q
    ||||||||||||| ||| || |||| || |||||||||||||| || ||| ||||| |||||||||||        ||||||||||||||||||||||||    
T  39610168 ttcttcttcttgtcagaggggtgatttatggtcaattttgacccaataatcacccctccgagttgttttttttttcttccttctatcctaattgaataag 39610267  T
Q  766 cgatttccacatatttt 782  Q
     ||||| ||||||||||    
T  39610268 tgattt-cacatatttt 39610283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 47944337 - 47944400
Alignment:
Q  402 tgtatcgaaattttataatagtttttgattattcattttgttaatcaaaataatctatgacgtt 465  Q
    ||||||||||||||| |||||| ||||||| | || ||||||| |||||||||| |||||||||    
T  47944337 tgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaataatatatgacgtt 47944400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 739 - 789
Target Start/End: Complemental strand, 41868394 - 41868345
Alignment:
Q  739 tttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  41868394 tttttccttctatcctaattgaataagtgattt-cacatattttctgtttt 41868345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 789
Target Start/End: Original strand, 22484991 - 22485043
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||||| |||||    
T  22484991 ttgtttttccttctatcctaattgaataagtgattt-cgcatattttctgtttt 22485043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 27787555 - 27787632
Alignment:
Q  19 atagtactccacgatttacaaaggatacgagaacttgttacaaatgatgcaagctcaattccactgcaaaatctgcaa 96  Q
    |||||| |||| ||||| | ||||||   |||||| || ||||| |||||||||||||||||||||| ||||||||||    
T  27787555 atagtagtccatgatttgctaaggatggtagaactagtcacaaaagatgcaagctcaattccactgctaaatctgcaa 27787632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 789
Target Start/End: Complemental strand, 24483781 - 24483729
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||| ||||||| |||||||||||| ||||| ||||||||||| |||||    
T  24483781 ttgtttttcattctatcataattgaataagtgattt-cacatattttctgtttt 24483729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 27766363 - 27766408
Alignment:
Q  48 agaacttgttacaaatgatgcaagctcaattccactgcaaaatctg 93  Q
    ||||||||| ||||| |||||||||||||||||||| | |||||||    
T  27766363 agaacttgtgacaaaagatgcaagctcaattccacttctaaatctg 27766408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 34979226 - 34979177
Alignment:
Q  404 tatcgaaattttataatagtttttgattattcattttgttaatcaaaata 453  Q
    ||||||||||||| |||||||||| ||| | |||||||||| ||||||||    
T  34979226 tatcgaaattttaaaatagtttttaattgtgcattttgttagtcaaaata 34979177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 789
Target Start/End: Original strand, 38527289 - 38527341
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||||||| |||||    
T  38527289 ttgtttttccttctatcttaattgaataaatgattt-cacatattttctgtttt 38527341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 649 - 788
Target Start/End: Original strand, 2838 - 2979
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttg--tttttcc 745  Q
    |||| |||||||||  | |||||  |||||||||||||||||| || |||| ||||||||||||||||| || ||| ||||| ||||||||  |||||||    
T  2838 cttctcaaaccctagtcgtcacccctttcttcttcttgttagaggggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcc 2937  T
Q  746 ttctatcctaattgaataagcgatttccacatattttcagttt 788  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||    
T  2938 ttctatcctaattgaataagtgattt-cacatattttctgttt 2979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 6420015 - 6419908
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| || |||| ||||||||||||||| | |||||| ||||| | ||||||||||||||||||||||||||||||||| ||||| |    
T  6420015 ttcttcttcttgtcagaggggtgatttagggtcaattttgatccaaaaatcacccctctgagttgtttttccttctatcctaattgaataagtgattt-c 6419917  T
Q  774 acatatttt 782  Q
    |||||||||    
T  6419916 acatatttt 6419908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 12481527 - 12481413
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| ||| || |||| |||| |||||||||||| |||||| ||||| |||| ||||||||||||||| | |||||||||||| ||||| |    
T  12481527 ttcttcttcttgtcagaggggtgatttaggatcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgattt-c 12481429  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  12481428 acatattttctgtttt 12481413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 15590236 - 15590122
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| || |||| ||||||||||||||||| |||||| ||||| | || |||||||| ||||||||||||||||||||| ||||| |    
T  15590236 ttcttcttcttttcagaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgttttttcttctatcctaattgaataagtgattt-c 15590138  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  15590137 acatattttctgtttt 15590122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 21507965 - 21507858
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| ||||||||||||||||| ||| || ||||| || | |||||||||||||||||||| ||||||||| ||||| |    
T  21507965 ttcttcttctttttagaggggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgattt-c 21507867  T
Q  774 acatatttt 782  Q
    |||||||||    
T  21507866 acatatttt 21507858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 673 - 782
Target Start/End: Complemental strand, 14783330 - 14783221
Alignment:
Q  673 ttttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    |||| |||||||  ||||| || |||| ||||||||||||||||| |||||| || || |||| |||||||||||||||||||| ||||||||| |||||    
T  14783330 tttttttcttctgtttagagggctgatttagggtcaattttgacccaaaaatcacgcctccgaattgtttttccttctatcctagttgaataagtgattt 14783231  T
Q  772 ccacatatttt 782  Q
     ||||||||||    
T  14783230 -cacatatttt 14783221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 4922039 - 4921924
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgttttt--ccttctatcctaattgaataagcgatttc 772  Q
    |||||||||| |||| | || |||| ||||||||||||||||| ||||||  ||| || ||| ||||||  ||||||||| |||||||||||| |||||     
T  4922039 ttcttcttctcgttaaaggggtgatttagggtcaattttgacccaaaaatacccctcccagtagtttttttccttctatcttaattgaataagtgattt- 4921941  T
Q  773 cacatattttcagtttt 789  Q
    |||||||||||||||||    
T  4921940 cacatattttcagtttt 4921924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 675 - 763
Target Start/End: Complemental strand, 29927536 - 29927447
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaata 763  Q
    ||||||||||||| |||||  |||| || |||||||||||||| |||||| || || || ||||||||||||||||||||||||||||||    
T  29927536 ttcttcttcttgtcagatgagtgatttatggtcaattttgacccaaaaatcactcctccaagttgtttttccttctatcctaattgaata 29927447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 8693817 - 8693700
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttcta---tcctaattgaataagcgatt 770  Q
    ||||||||||| ||||| || |||| || |||||||||||||| |||||| ||||  |||| |||||||||||||||   ||||||||||||||| ||||    
T  8693817 ttcttcttctttttagaggggtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctcctaattgaataagtgatt 8693718  T
Q  771 tccacatattttcagtttt 789  Q
    | ||||||||||| |||||    
T  8693717 t-cacatattttctgtttt 8693700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 23654214 - 23654321
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||| |||  | |||| ||||||||||||||||| |||||| ||||  |||| ||||||||||||||| | ||| |||||||| ||||| |    
T  23654214 ttcttcttcttgtcagagaggtgatttagggtcaattttgacccaaaaatcacccatccgatttgtttttccttctaccttaactgaataagtgattt-c 23654312  T
Q  774 acatatttt 782  Q
    |||||||||    
T  23654313 acatatttt 23654321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 696 - 783
Target Start/End: Complemental strand, 31937554 - 31937468
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttc 783  Q
    |||| |||||||| |||||||| |||||| ||||| |||| ||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  31937554 tgatttagggtcagttttgacccaaaaatcacccctccgaattgtttttc-ttctatcctaattgaataagtgattt-cacatattttc 31937468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 2304967 - 2304853
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc-gagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| ||||||||||| || |||| |||| || ||||||||| |||||| | ||| | |||||||||| |||||| || |||||||||||| ||||| |    
T  2304967 ttctttttcttgttagaggggtgatttaggatcgattttgacccaaaaatcaaccctctgagttgttttcccttctgtcataattgaataagtgattt-c 2304869  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  2304868 acatattttctgtttt 2304853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 466
Target Start/End: Original strand, 29920458 - 29920537
Alignment:
Q  388 acaataatcctt-attgtatcgaaattttataatagtttttgattattcattttgttaatcaaaataatctatgacgttg 466  Q
    |||||||||||| | |||||| |||||| | |||||||||||||||| |||||| ||||| |||||||||| ||| ||||    
T  29920458 acaataatccttcaatgtatcaaaatttcaaaatagtttttgattatgcattttattaattaaaataatctctgatgttg 29920537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 35220060 - 35219947
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| || || || |||| ||||||||||||||||  |||||| ||||| || ||||| |||||||||||||| ||| ||||||| ||| | |    
T  35220060 ttcttcttcttcttggaggggtgatttagggtcaattttgactcaaaaatcacccctccaagttg-ttttccttctatccgaatcgaataagtgatat-c 35219963  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  35219962 acatattttctgtttt 35219947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 2159779 - 2159735
Alignment:
Q  52 cttgttacaaatgatgcaagctcaattccactgcaaaatctgcaa 96  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||||    
T  2159779 cttgtcacaaatgatgcatgctcaattccactgctaaatctgcaa 2159735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 2174342 - 2174298
Alignment:
Q  52 cttgttacaaatgatgcaagctcaattccactgcaaaatctgcaa 96  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||||    
T  2174342 cttgtcacaaatgatgcatgctcaattccactgctaaatctgcaa 2174298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 741 - 789
Target Start/End: Original strand, 2488169 - 2488217
Alignment:
Q  741 tttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||| ||||    
T  2488169 tttccttctatcctaatcgaataagtgatttccacgtattttcattttt 2488217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 9307284 - 9307337
Alignment:
Q  402 tgtatcgaaattttataatagtttttgattattcattttgttaatcaaaataat 455  Q
    |||||| |||||||| |||||||||| ||||| || || |||||||||||||||    
T  9307284 tgtatcaaaattttaaaatagttttttattatgcacttcgttaatcaaaataat 9307337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 17331292 - 17331406
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||| |||| ||| || |||| ||||||||||||||||| |||||| ||||| |||| ||||||||||||||||| |||||||||||| ||||| |    
T  17331292 ttcttcttgttgtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgattt-c 17331390  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  17331391 acatattttctgtttt 17331406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 17699517 - 17699631
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | |||||  |||| ||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| |    
T  17699517 ttcttcttcttttcagatgagtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgattt-c 17699615  T
Q  774 acatattttcagtttt 789  Q
    |||| ||||| |||||    
T  17699616 acatcttttctgtttt 17699631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 649 - 789
Target Start/End: Original strand, 27241002 - 27241142
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttcctt 747  Q
    |||| ||||||||| |  |||||  |||||||||||| |||||||| |||| || | |||||||||||| |||||| ||||| | || ||||||||||||    
T  27241002 cttctcaaaccctatctgtcacctctttcttcttctttttagatgggtgatttatgatcaattttgacccaaaaatcacccctctgaattgtttttcctt 27241101  T
Q  748 ctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
     ||||||||||||||||| ||||| ||||||||||| |||||    
T  27241102 ttatcctaattgaataagtgattt-cacatattttctgtttt 27241142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 6635213 - 6635328
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccccc--gagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    |||| |||||||| ||| ||||||| ||||| ||||||||||| |||||| |||| |   |||||||||||||||||||| |||||||||||| |||||     
T  6635213 ttctccttcttgtcagagggatgatttagggccaattttgacccaaaaatcaccctctctgagttgtttttccttctatcataattgaataagtgattt- 6635311  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  6635312 cacatattttctgtttt 6635328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 674 - 788
Target Start/End: Complemental strand, 17096400 - 17096283
Alignment:
Q  674 tttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgttttt---ccttctatcctaattgaataagcgat 769  Q
    |||||||||||||| ||| || |||| ||||||||||||||||| || ||| ||||| || ||||||||||   |||||||||||||||||||||| |||    
T  17096400 tttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataatcacccctcccagttgttttttttccttctatcctaattgaataagtgat 17096301  T
Q  770 ttccacatattttcagttt 788  Q
    || ||||||||||| ||||    
T  17096300 tt-cacatattttctgttt 17096283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 678 - 782
Target Start/End: Original strand, 43493839 - 43493943
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||| ||||| || |||| ||||||||||||||| | |||||| ||| | |||| |||||||||||||||| ||||||||||||| ||||| ||||    
T  43493839 ttcttctttttagaggggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgattt-caca 43493937  T
Q  777 tatttt 782  Q
    ||||||    
T  43493938 tatttt 43493943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 696 - 783
Target Start/End: Original strand, 42609129 - 42609216
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttc 783  Q
    |||| |||||||||||||||||||||||| || |  |||| |||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  42609129 tgatttagggtcaattttgacctaaaaatcactcatccgaattgttttttcttctatcctaattgaataagtgattt-cacatattttc 42609216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 667 - 749
Target Start/End: Complemental strand, 7771971 - 7771888
Alignment:
Q  667 tcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttct 749  Q
    ||||| ||||||||||||| ||||| || |||| ||||||||||||||||| |||||| ||||| |||| ||||||||||||||    
T  7771971 tcacccttttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttct 7771888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 673 - 772
Target Start/End: Complemental strand, 12439792 - 12439693
Alignment:
Q  673 ttttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||||| || ||  | |||| |||||  ||||||||||||||||| |||| |||| ||||||||| |||||||||| ||||||||| ||||||    
T  12439792 ttttcttcttcttttttgagaggtgatttagggataattttgacctaaaaatcaccctccgaattgtttttcattctatcctagttgaataagtgatttc 12439693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 28040593 - 28040707
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| || |||| || |||||||||||||| |||||| ||||| || | | |||||||||| ||||||||||||||||| ||||| |    
T  28040593 ttcttcttcttttcagaggggtgatttacggtcaattttgacccaaaaatcacccctccaaatcgtttttccttatatcctaattgaataagtgattt-c 28040691  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  28040692 acatattttctgtttt 28040707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 29097753 - 29097867
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||||||||   | || |||| ||||||||||||||||| ||| || ||||| |||| ||||||||||||||| | |||||||||||| ||||| |    
T  29097753 ttcttcttcttgtcctaggggtgatttagggtcaattttgacccaaagatcacccctccgatttgtttttccttctaccttaattgaataagtgattt-c 29097851  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  29097852 acatattttctgtttt 29097867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 696 - 789
Target Start/End: Complemental strand, 32347851 - 32347757
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgttttt-ccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| ||||||||| ||||||| |||||| ||||| |||| |||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||    
T  32347851 tgatttagggtcaactttgacccaaaaatcacccctccgacttgttttttccttctatcctaattgaataagtgattt-cacatattttctgtttt 32347757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 771
Target Start/End: Original strand, 6281008 - 6281105
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    ||||||||||| ||||| || |||| || |||||||||||||| |||||| ||||| | || || ||||||||||||| ||||||||||||| |||||    
T  6281008 ttcttcttctttttagaggggtgatttatggtcaattttgacccaaaaatcacccctctgaattatttttccttctattctaattgaataagtgattt 6281105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 761
Target Start/End: Complemental strand, 981182 - 981095
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaa 761  Q
    ||||||||||| ||||| || |||| |||| |||||||||||| || |||  |||| |||||||||||||||||||||| ||||||||    
T  981182 ttcttcttctttttagaagggtgatttaggatcaattttgacccaataatcgcccctccgagttgtttttccttctatcataattgaa 981095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 20483150 - 20483264
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaa-ttgaataagcgatttcc 773  Q
    ||||||||||| || || || |||| |||| |||||||||||| |||||| |||| || | |||||||||||| ||| |||| ||||||||| ||||| |    
T  20483150 ttcttcttctttttggaggggtgatttaggatcaattttgacccaaaaatcaccctccaaattgtttttccttttattctaatttgaataagtgattt-c 20483248  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  20483249 acatattttctgtttt 20483264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 17687226 - 17687283
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||||||| ||||||||||||  |||| |||||||||||||||||    
T  17687226 ccgagttgtttttccttctatcttaattgaataagttattt-cacatattttcagtttt 17687283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 771
Target Start/End: Complemental strand, 26295215 - 26295118
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    ||||||||| | |||||  | |||| ||||||||||||||| | |||||| ||||| ||||  |||||||||||||||||| |||||||||| |||||    
T  26295215 ttcttcttcattttagagaggtgatttagggtcaattttgatccaaaaatcacccctccgaagtgtttttccttctatccttattgaataagtgattt 26295118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 704 - 782
Target Start/End: Complemental strand, 178234 - 178156
Alignment:
Q  704 ggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||||||||||||  |||||| ||| | ||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||    
T  178234 ggtcaattttgactcaaaaatcacctctccgagttgtgtttccttatatcctaattgaataagtgattt-cacatatttt 178156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 33164625 - 33164511
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| || |||| ||| || |||| || |||||||||||||  |||||| || || |||| ||||||||||||||| | |||||||||||| ||||| |    
T  33164625 ttcttgttgttgtcagaggggtgatttatggtcaattttgactcaaaaatcactcctccgaattgtttttccttctaccttaattgaataagtgattt-c 33164527  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  33164526 acatattttctgtttt 33164511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 695 - 789
Target Start/End: Original strand, 34431044 - 34431138
Alignment:
Q  695 atgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||| ||||||||||||||||| |||||| ||||   ||| |||||||| |||||||  |||||||||||| ||||| ||||||||||| |||||    
T  34431044 atgatttagggtcaattttgacccaaaaatcacccattcgaattgttttttcttctattttaattgaataagtgattt-cacatattttctgtttt 34431138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 781
Target Start/End: Complemental strand, 39531558 - 39531454
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttcca 774  Q
    |||||| |||| | |||||| |||| || |||||||||||||| ||||    ||| |||||||||||| ||||||||| |||||||||||| ||||| ||    
T  39531558 ttcttcatcttctcagatgggtgatttaaggtcaattttgacccaaaatcatccctccgagttgtttt-ccttctatcgtaattgaataagtgattt-ca 39531461  T
Q  775 catattt 781  Q
    |||||||    
T  39531460 catattt 39531454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 789
Target Start/End: Original strand, 3740387 - 3740435
Alignment:
Q  740 ttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  3740387 ttttccttctatcctaattgaataagtgattt-cacatattttctgtttt 3740435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 793
Target Start/End: Original strand, 39915583 - 39915639
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttttgtg 793  Q
    |||||||||||||| || || ||||||||| |||||||||||||||||||| ||||||    
T  39915583 ttgtttttccttctttc-tacttgaataagtgatttccacatattttcagtctttgtg 39915639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 739 - 789
Target Start/End: Complemental strand, 39179920 - 39179871
Alignment:
Q  739 tttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||| |||||    
T  39179920 tttttccttctattctaattgaataagtgattt-cacatattttctgtttt 39179871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 789
Target Start/End: Original strand, 12891706 - 12891754
Alignment:
Q  740 ttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  12891706 ttttccttttatcctaattgaataagtgattt-cacatattttctgtttt 12891754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 673 - 782
Target Start/End: Original strand, 37612615 - 37612724
Alignment:
Q  673 ttttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgattt 771  Q
    ||||||||||||| ||||| || |||| ||||||||||||||||| |||||| ||||| |||| || ||||||||||||||||| ||||||||| |||||    
T  37612615 ttttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgattt 37612714  T
Q  772 ccacatatttt 782  Q
     ||||||||||    
T  37612715 -cacatatttt 37612724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 788
Target Start/End: Original strand, 10147910 - 10148024
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttg-tttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||| ||||||| || |||| ||||||||||||||||| || ||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||     
T  10147910 ttcttcttcatgttagaggggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcttctatcctaattgaataagtgattt- 10148008  T
Q  773 cacatattttcagttt 788  Q
    ||||||||||| ||||    
T  10148009 cacatattttctgttt 10148024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 649 - 772
Target Start/End: Complemental strand, 1810410 - 1810287
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttcctt 747  Q
    |||| |||||||||  | ||||| ||||||||||||| ||||| || |||| ||||||||||||||||| |||||| ||||| |||| || ||||| |||    
T  1810410 cttcccaaaccctagtcgtcacccttttcttcttctttttagaggggtgatttagggtcaattttgacccaaaaatcacccctccga-tttttttttctt 1810312  T
Q  748 ctatcctaattgaataagcgatttc 772  Q
    ||||||||||| |||||| ||||||    
T  1810311 ctatcctaattcaataagtgatttc 1810287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 675 - 782
Target Start/End: Original strand, 31308106 - 31308219
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-------ccgagttgtttttccttctatcctaattgaataagcg 767  Q
    ||||||||||||||||| || |||| || |||||||||||| |||||||| ||| |       ||||||||||||||||||||||||||||||||||| |    
T  31308106 ttcttcttcttgttagaggggtgatttaaggtcaattttgatctaaaaatcacctctccgactccgagttgtttttccttctatcctaattgaataagtg 31308205  T
Q  768 atttccacatatttt 782  Q
    |||| ||||||||||    
T  31308206 attt-cacatatttt 31308219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 2025374 - 2025260
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||||||| || |||| || |||||||||||||| |||||| ||||  || |||||||||||||| ||| ||||||||||||| ||||| |    
T  2025374 ttcttcttcttgttagaggggtgatttatggtcaattttgaccaaaaaatcacccttccaagttgtttttccttttattctaattgaataagtgattt-c 2025276  T
Q  774 acatattttcagtttt 789  Q
    |||| ||||| |||||    
T  2025275 acatgttttctgtttt 2025260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 11161846 - 11161960
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||||||||| || | || ||||||||||||||||| |||||| |||||  | ||||||||||| || |||||||||||||||||  |||| |    
T  11161846 ttcttcttcttgttagaggggtaatttagggtcaattttgacccaaaaatcaccccttcaagttgtttttctttatatcctaattgaataagtcattt-c 11161944  T
Q  774 acatattttcagtttt 789  Q
    |||| |||||||||||    
T  11161945 acatcttttcagtttt 11161960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 14600863 - 14600749
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| |||||||||||  | |||| ||||||||||||||||| |||||| | ||  ||||||||||||| ||||||||||||||||||||  ||||| |    
T  14600863 ttctttttcttgttagagaggtgatttagggtcaattttgacccaaaaatcatccatccgagttgttttttcttctatcctaattgaataactgattt-c 14600765  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  14600764 acatattttctgtttt 14600749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 681 - 789
Target Start/End: Complemental strand, 30027039 - 30026931
Alignment:
Q  681 ttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatat 779  Q
    ||||||| ||| || |||| |||||||| |||||||| |||||| ||||  ||||||||||||| |||||||| |||||||||||| ||||| |||||||    
T  30027039 ttcttgtcagaggggtgatttagggtcatttttgacccaaaaatcacccatccgagttgttttttcttctatcataattgaataagtgattt-cacatat 30026941  T
Q  780 tttcagtttt 789  Q
    |||| |||||    
T  30026940 tttctgtttt 30026931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 2234635 - 2234528
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||| | || ||||||||||| |||||||| | |||||| |||||  ||| |||||||||||||||||||| ||||||||| ||||| |    
T  2234635 ttcttcttctttttaaaagggtgatctagggttaattttgatccaaaaatcaccccttcgaattgtttttccttctatcctagttgaataagtgattt-c 2234537  T
Q  774 acatatttt 782  Q
    |||||||||    
T  2234536 acatatttt 2234528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 789
Target Start/End: Complemental strand, 3204901 - 3204807
Alignment:
Q  694 gatgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||| ||| ||||||||||||| ||||||||||| |||| |||||||||| ||||| |||||| ||| || ||||| ||||||||||| |||||    
T  3204901 gatgatttagagtcaattttgacccaaaaattaccctccgaattgtttttccatctattctaatttaatgagtgattt-cacatattttctgtttt 3204807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 41361696 - 41361810
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||||||||   | || |||| || |||||||||||||| |||||| ||||| |||| ||||||||||||||| | |||||||||||| ||||| |    
T  41361696 ttcttcttcttgtcgaaggggtgatttatggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccgtaattgaataagtgattt-c 41361794  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  41361795 acatattttctgtttt 41361810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 732 - 789
Target Start/End: Complemental strand, 32779058 - 32779001
Alignment:
Q  732 cgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||    
T  32779058 cgagttgtttttccttatatcataattaaataagagatttccacatattttcagtttt 32779001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 704 - 782
Target Start/End: Complemental strand, 10338958 - 10338880
Alignment:
Q  704 ggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||||||||||||  |||||| ||||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  10338958 ggtcaattttgacgcaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatatttt 10338880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 24791333 - 24791219
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatta-ccccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| || |||| || |||||||||||||| |||||| | ||  |||| |||||||||||| |||||||||| |||||| |||||      
T  24791333 ttcttcttctttttagaggggtgatttatggtcaattttgacccaaaaatcatccatccgaattgtttttccttatatcctaattcaataagtgattt-a 24791235  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  24791234 acatattttctgtttt 24791219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 31202422 - 31202536
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatta-ccccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| |||||||| |||| || |||||||||||||| |||||| | ||  || | ||||||||| ||||||  |||||||||||| ||||| |    
T  31202422 ttcttcttctttttagatgggtgatttaaggtcaattttgacccaaaaatcatccatccaaattgtttttctttctattataattgaataagtgattt-c 31202520  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  31202521 acatattttctgtttt 31202536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 24699794 - 24699910
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttg--tttttccttctatcctaattgaataagcgattt 771  Q
    ||||||||||||| ||| || |||| ||||||||||||||||| |||||| ||||  ||||| ||  ||||| ||| |||||||||| |||||| |||||    
T  24699794 ttcttcttcttgtcagaagggtgatttagggtcaattttgacccaaaaatcacccatccgagatgttttttttcttatatcctaattaaataagtgattt 24699893  T
Q  772 ccacatattttcagtttt 789  Q
     ||||||||||| |||||    
T  24699894 -cacatattttctgtttt 24699910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 783
Target Start/End: Complemental strand, 1040057 - 1039950
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| ||||| ||||||| || |||||||||||| | |||||| ||||  |||| ||| |||||||||||| |||||| |||||| ||||| |    
T  1040057 ttcttcttctttttaga-ggatgatttaaggtcaattttgatccaaaaatcacccatccgaattggttttccttctattctaattcaataagtgattt-c 1039960  T
Q  774 acatattttc 783  Q
    ||||||||||    
T  1039959 acatattttc 1039950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 789
Target Start/End: Original strand, 9501553 - 9501668
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttg-tttttccttctatcctaattgaataagcgatttc 772  Q
    ||||||||||| ||| |  | |||| ||||||||||||||| | |||||| ||||  | || ||| ||||||||||||||||||||||||||| |||||     
T  9501553 ttcttcttctttttaaagtggtgatttagggtcaattttgatccaaaaatcacccatctgaattgttttttccttctatcctaattgaataagtgattt- 9501651  T
Q  773 cacatattttcagtttt 789  Q
    ||||||||||| |||||    
T  9501652 cacatattttctgtttt 9501668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 789
Target Start/End: Original strand, 12329593 - 12329704
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    |||||||| | |||||| |||| ||| ||||||||||| | |||||| |||    ||| |||||||||||| ||||||||||||||||| ||||| ||||    
T  12329593 ttcttcttttcagatgggtgatttagagtcaattttgatccaaaaatcaccatttcgaattgtttttccttttatcctaattgaataagtgattt-caca 12329691  T
Q  777 tattttcagtttt 789  Q
    ||||||| |||||    
T  12329692 tattttctgtttt 12329704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 23971259 - 23971152
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||| |||||||||||  | |||| ||  || |||||||||| |||||| || |  ||||||||||||||||||||| ||||||||||||| ||||| |    
T  23971259 ttctttttcttgttagagaggtgatttaaagtaaattttgaccaaaaaatcactcatccgagttgtttttccttctattctaattgaataagtgattt-c 23971161  T
Q  774 acatatttt 782  Q
    |||||||||    
T  23971160 acatatttt 23971152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 782
Target Start/End: Complemental strand, 31407913 - 31407806
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaatta-ccccccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    |||||||| || ||||| || |||| ||||||||||||||||| |||||| | | | |||| ||||||||||||||||| || ||||||||  ||||| |    
T  31407913 ttcttcttatttttagaggggtgatttagggtcaattttgacccaaaaatcatctctccgaattgtttttccttctatcatagttgaataaatgattt-c 31407815  T
Q  774 acatatttt 782  Q
    |||||||||    
T  31407814 acatatttt 31407806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 789
Target Start/End: Complemental strand, 39067854 - 39067740
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttcc 773  Q
    ||||||||||| | ||| || |||| || |||||||||||||| |||||| ||    || | ||||||||||||||||||||||| |||||| ||||| |    
T  39067854 ttcttcttcttttaagaggggtgatttaaggtcaattttgacccaaaaatcactgttccaaattgtttttccttctatcctaatttaataagtgattt-c 39067756  T
Q  774 acatattttcagtttt 789  Q
    |||||||||| |||||    
T  39067755 acatattttctgtttt 39067740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 752
Target Start/End: Complemental strand, 7583929 - 7583851
Alignment:
Q  675 ttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccc-cccgagttgtttttccttctatc 752  Q
    ||||||||||||| ||| || |||| |||| |||||||||||| |||||| ||||  ||||||||||||||||| ||||    
T  7583929 ttcttcttcttgtcagaggggtgatttaggatcaattttgacccaaaaatcacccatccgagttgtttttccttttatc 7583851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 724
Target Start/End: Original strand, 1810431 - 1810468
Alignment:
Q  687 ttagatggatgatctagggtcaattttgacctaaaaat 724  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  1810431 ttagatggatgatttagggtcaattttgacctaaaaat 1810468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 6915581 - 6915516
Alignment:
Q  388 acaataatccttattgtatcgaaattttataatagtttttgattattcattttgttaatcaaaata 453  Q
    |||||| |||||| |||||| |||||||| |||| ||||||||| | |||| ||||||||||||||    
T  6915581 acaatagtccttaatgtatcaaaattttaaaataatttttgattgtgcattatgttaatcaaaata 6915516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 782
Target Start/End: Complemental strand, 30039440 - 30039389
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||| |||||||||||||| | ||||||||||| | ||||||||||||||||    
T  30039440 ccgaattgtttttccttcttttctaattgaatatgtgatttccacatatttt 30039389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 782
Target Start/End: Complemental strand, 37128594 - 37128544
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    |||| |||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  37128594 ccgaattgtttttccttctatcctagttgaataagtgattt-cacatatttt 37128544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 2968552 - 2968610
Alignment:
Q  731 ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||| || ||| |||||| |||||| ||||| |||||||||| ||||||    
T  2968552 ccgagttgtttttctttatattctaattaaataagtgattttcacatatttttagtttt 2968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 758
Target Start/End: Complemental strand, 13576319 - 13576257
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaatt 758  Q
    |||| |||| |||||||||||||||||    ||| |||||||||||||| |||||||||||||    
T  13576319 tgatttaggatcaattttgacctaaaatcatccctccgagttgtttttctttctatcctaatt 13576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 696 - 789
Target Start/End: Original strand, 35067 - 35162
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttc-cacatattttcagtttt 789  Q
    |||| ||||||||||||||||| |||||| ||||  ||||||||||||||||||||||||||||||||||| |||||| || |||||||| |||||    
T  35067 tgatttagggtcaattttgacccaaaaatcacccatccgagttgtttttccttctatcctaattgaataagtgatttcacatatattttctgtttt 35162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 678 - 789
Target Start/End: Complemental strand, 1240 - 1129
Alignment:
Q  678 ttcttcttgttagatggatgatctagggtcaattttgacctaaaaattaccccc-cgagttgtttttccttctatcctaattgaataagcgatttccaca 776  Q
    ||||| |||| ||| || |||| || |||||||||||||| |||||| |||||  ||| ||||||||||||||| |||||||||||||| ||||| ||||    
T  1240 ttctttttgtcagaggggtgatttaaggtcaattttgacccaaaaatcacccctgcgaattgtttttccttctaccctaattgaataagtgattt-caca 1142  T
Q  777 tattttcagtttt 789  Q
    |||||||||||||    
T  1141 tattttcagtttt 1129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 736 - 782
Target Start/End: Original strand, 1 - 46
Alignment:
Q  736 ttgtttttccttctatcctaattgaataagcgatttccacatatttt 782  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  1 ttgtttttccttctatcttaattgaataagtgattt-cacatatttt 46  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 696 - 789
Target Start/End: Complemental strand, 2552 - 2460
Alignment:
Q  696 tgatctagggtcaattttgacctaaaaattaccccccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||| |||||||| |||||||| |||||| |||| | |||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |||||    
T  2552 tgatttagggtcatttttgacccaaaaatcaccctctgagttgtttttccttctatcataatcgaataagtgattt-cacatattttctgtttt 2460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 649 - 789
Target Start/End: Original strand, 74102 - 74242
Alignment:
Q  649 cttcgcaaaccctaaccatcaccattttcttcttcttgttagatggatgatctagggtcaattttgacctaaaaattacccc-ccgagttgtttttcctt 747  Q
    |||| ||||||||| || ||||| ||||||| || || | ||| |  |||| |||  |||||||||||| |||||| ||||  |||| ||||||||||||    
T  74102 cttctcaaaccctagccgtcacccttttcttttttttttcagaggagtgatttagaatcaattttgacccaaaaatcacccatccgaattgtttttcctt 74201  T
Q  748 ctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||||||||| ||||| ||||||||||| |||||    
T  74202 ctatcctaattgaataagtgattt-cacatattttctgtttt 74242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 701 - 789
Target Start/End: Complemental strand, 7255 - 7167
Alignment:
Q  701 tagggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    ||||||| | ||||||| |||||| ||||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  7255 tagggtccaatttgacccaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttt 7167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 19700 - 19744
Alignment:
Q  52 cttgttacaaatgatgcaagctcaattccactgcaaaatctgcaa 96  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||||    
T  19700 cttgtcacaaatgatgcatgctcaattccactgctaaatctgcaa 19744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 704 - 789
Target Start/End: Complemental strand, 404386 - 404301
Alignment:
Q  704 ggtcaattttgacctaaaaattacccc-ccgagttgtttttccttctatcctaattgaataagcgatttccacatattttcagtttt 789  Q
    |||||||||||| | |||||| ||||  |||| | ||||||| | |||||||||||||||||| ||||| ||||||||||| |||||    
T  404386 ggtcaattttgatccaaaaatcacccatccgaatagtttttcttgctatcctaattgaataagtgattt-cacatattttctgtttt 404301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University