View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_11 (Length: 503)
Name: NF13245_low_11
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 45 - 487
Target Start/End: Original strand, 38747744 - 38748183
Alignment:
| Q |
45 |
gaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaatcgaagaaccatagcgtg |
144 |
Q |
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| T |
38747744 |
gaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaattgaagaaccgtagcgtg |
38747843 |
T |
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| Q |
145 |
aaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggaga |
244 |
Q |
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| T |
38747844 |
aaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggaga |
38747943 |
T |
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| Q |
245 |
attattagcaccattacca------ttaccattaccaccacagtgacaaagcaaacaacaattgtttgattttgaagcaacatggttattcaaaagcttg |
338 |
Q |
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| T |
38747944 |
attattagcaccattaccattaccgttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagcttg |
38748043 |
T |
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| Q |
339 |
ttatttttcttgttgcatgaaaaatgttcatttgaagatggagaagatgatgtaattggaaggattcttaattgacgaggagtgtgtgcaaagaaacaaa |
438 |
Q |
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| T |
38748044 |
ttatttttcttgttgcatgaaaaatgttcattt---------gaagatgatgtaactggaaggattcttaattgacgaggagtgtgtgcaaagaaacaaa |
38748134 |
T |
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| Q |
439 |
cttttctcttacagtttttaccatctttgcatgcttcagttctgtatct |
487 |
Q |
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| T |
38748135 |
cttttctcttacagtttttaccatctttgcatgcttcagttctgtatct |
38748183 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 490
Target Start/End: Complemental strand, 30385830 - 30385750
Alignment:
| Q |
410 |
ttgacgaggagtgtgtgcaaagaaacaaacttttctcttacagtttttaccatctttgcatgcttcagttctgtatcttga |
490 |
Q |
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| T |
30385830 |
ttgacgaggtgtatgagcaaaaaaacaaatttttcgcttacaatttttaccatctttacaagcttcagttctataccttga |
30385750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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