View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13245_low_12 (Length: 489)
Name: NF13245_low_12
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_12 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0020 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 136048 - 135592
Alignment:
| Q |
18 |
atgaagttccaagtacatgcttatattgttttccatcggatgaattatgtttcctgattaattcttcacttgtgttttatattttttgatttgtgtctga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
136048 |
atgaagttccaaatacatgcttatattgttttccatcagatgaattatctttcctgattaattcttcgattgtgttttatattttatgatttgtgtctga |
135949 |
T |
|
| Q |
118 |
gtgcatactctattatgtggataatgaaatgttgttttgtttctttacaatttggctctttaggtaaatgtgttgactcatattgctaaagtggaactgg |
217 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
135948 |
gtgcatactctatt-tgtggatgatgaaatgttgttctgtttctttacaatttggctttttaggtaaatgtgttgactcatattgctaa-gtggaactgg |
135851 |
T |
|
| Q |
218 |
aaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagagggagctactaattggtgataatcaggatggagagaccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135850 |
aaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagagggagctactaattggtgataatcaggatggagagaccaa |
135751 |
T |
|
| Q |
318 |
tgttgacgggtttgataatctgtcttctcccatgactgcttcagatgaccaaaatagtgttcgagtcatggaaaatgaaagtggattatgtgatgcgaag |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135750 |
tgttgacgggcttgataatctgtcttctcccatgactgcttcagatgagcaaaatagtgttcgagtcatggaaaatgaaagtggattatgtgatgcgaag |
135651 |
T |
|
| Q |
418 |
gtggttgattcagttcatcacgaaaatagtttagatggtgcgctctgggatatttttcg |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
135650 |
gtggttgattcagttcatcacgaaaatagtttagatggtgctctctgggatatttttcg |
135592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 166 - 476
Target Start/End: Complemental strand, 20867155 - 20866848
Alignment:
| Q |
166 |
aatttggctctttaggtaaatgtgttgactcatattgctaaagtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttg |
265 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
20867155 |
aatttggctttttaggtaaatgtgttgactcatgttgctaaagtggaactggaaactgtgagcattactgcaattaaaaaattaacagaaaagcaccttg |
20867056 |
T |
|
| Q |
266 |
agcaagacaagagggagctactaattggtgataatcaggatggagagaccaatgttgacgggtttgataatctgtcttctcccatgactgcttcagatga |
365 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || ||||||||| ||||||| || | | |||||||||||| |
|
|
| T |
20867055 |
agcaagacaagagggagctaca---tggtgataatcaagatggagagaccaatgttgacaggcttgataatcggtcttcttccgtaattgcttcagatga |
20866959 |
T |
|
| Q |
366 |
ccaaaatagtgttcgagtcatggaaaatgaaagtggattatgtgatgcgaaggtggttgattcagttcatcacgaaaatagtttagatggtgcgctctgg |
465 |
Q |
| |
|
||||||| ||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
20866958 |
gaaaaatagcgttgatgtcgtggaaaatggaagtggattgtgtgatgcgaaggtggttgattcagttcatcaagaaaatagtttagatggtgctcactgg |
20866859 |
T |
|
| Q |
466 |
gatatttttcg |
476 |
Q |
| |
|
||||||||||| |
|
|
| T |
20866858 |
gatatttttcg |
20866848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 152 - 323
Target Start/End: Original strand, 27398335 - 27398502
Alignment:
| Q |
152 |
ttttgtttctttacaatttggctctttaggtaaatgtgttgactcatattgctaaagtggaactggaaactgagagtattactgcaattaagaaattgac |
251 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||| || ||||| | |||||||||||||||| |
|
|
| T |
27398335 |
ttttttttttttacaatttggct-tttaggtaaatgtgttgactcatattgctgaatcaaaactggatcgtgtgagtagtgacgcaattaagaaattgaa |
27398433 |
T |
|
| Q |
252 |
acaaaagcaccttgagcaagacaagagggagctactaattggtgataatcaggatggagagaccaatgttga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
27398434 |
acaaaagcaccttgagcaagacaagagggagctac---atggtgatattcaggatggagagaccaatgttga |
27398502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 43162573 - 43162675
Alignment:
| Q |
179 |
aggtaaatgtgttgactcatattgctaaagtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag |
278 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| || ||||| |||| || ||||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
43162573 |
aggtaaatgtgttgacgcatatcgctaaagtggaactgaaacctgaggaaattaatgtcattaagaaattgagacagaagcaccttgagcaagataagag |
43162672 |
T |
|
| Q |
279 |
gga |
281 |
Q |
| |
|
||| |
|
|
| T |
43162673 |
gga |
43162675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 176 - 394
Target Start/End: Original strand, 51482832 - 51483047
Alignment:
| Q |
176 |
tttaggtaaatgtgttgactcatattgctaaagtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaa |
275 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || || || ||||| | ||| |||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
51482832 |
tttaggtaaatgtgttgactcatattgctgaagtgaaattgaaatctgagggcattgctgccattgagaaactgacacaaaagcaccttgagcaagacaa |
51482931 |
T |
|
| Q |
276 |
gagggagctactaattggtgataatcaggatggagagaccaatgttgacgggtttgataatctgtcttctcccatgactgcttcagatgaccaaaatagt |
375 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||| |||||| |||| | || |||||| || ||||||||| |
|
|
| T |
51482932 |
gagggagctac---atggtgataatcaagatggagagaccaacgttgacatgtttgataattcatcttcttccataaatgtttcagacgagcaaaatagt |
51483028 |
T |
|
| Q |
376 |
gttcgagtcatggaaaatg |
394 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
51483029 |
gttcgagttatggaaaatg |
51483047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 169 - 393
Target Start/End: Original strand, 51499665 - 51499883
Alignment:
| Q |
169 |
ttggctctttaggtaaatgtgttgactcatattgctaaagtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagc |
268 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| || || | ||| || || |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
51499665 |
ttggctttttaggtaaatgtgttgactcatattgctgaagtgaaattgaactctgttggtcttgctgccattaagaaattgacagaaaagcaccttgagc |
51499764 |
T |
|
| Q |
269 |
aagacaagagggagctactaattggtgataatcaggatggagagaccaatgttgacgggtttgataatctgtcttctcccatgactgcttcagatgacca |
368 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||| || | |||||||| || ||| |||| | ||||||||| || | |
|
|
| T |
51499765 |
aagacaagagggagctac---atggtgataatcaggatggagagaccactgttaacaagcttgataat---tcatcttccataaatgcttcagacgagaa |
51499858 |
T |
|
| Q |
369 |
aaatagtgttcgagtcatggaaaat |
393 |
Q |
| |
|
|||| | |||| ||||||||||||| |
|
|
| T |
51499859 |
aaattgcgttccagtcatggaaaat |
51499883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 426
Target Start/End: Complemental strand, 30204408 - 30204239
Alignment:
| Q |
254 |
aaaagcaccttgagcaagacaagagggagctactaattggtgataatcaggatggagagaccaatgttgacgggtttgataatctgtcttctcccatgac |
353 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||| | | |||||| |||||| |||| | |
|
|
| T |
30204408 |
aaaatcaccttgagcaagacaagagggag---ctaattggtgataatcgggatggagagcccagcattgacatgctcgataatacatcttcttccataaa |
30204312 |
T |
|
| Q |
354 |
tgcttcagatgaccaaaatagtgttcgagtcatggaaaatgaaagtggattatgtgatgcgaaggtggttgat |
426 |
Q |
| |
|
|||||| | || ||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
30204311 |
tgcttcgtacgagcaaaatagtgttcgatttgtggaaaatggaagtggattatgtgatgaaaaggtggttgat |
30204239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 51458303 - 51458410
Alignment:
| Q |
179 |
aggtaaatgtgttgactcatattgctaaagtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag |
278 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||| |||| || |||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
51458303 |
aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag |
51458402 |
T |
|
| Q |
279 |
ggagctac |
286 |
Q |
| |
|
|||||||| |
|
|
| T |
51458403 |
ggagctac |
51458410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 36549805 - 36549885
Alignment:
| Q |
238 |
attaagaaattgacacaaaagcaccttgagcaagacaagagggagctactaattggtgataatcaggatggagagaccaatgtt |
321 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
36549805 |
attaagaaattgatacaaaagcaccttgagcaagataagagggtgctac---atggtgataatcaggatggagagaccactgtt |
36549885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 432
Target Start/End: Original strand, 4299925 - 4300199
Alignment:
| Q |
161 |
tttacaatttggctctttaggtaaatgtgttgactc--atattgctaaagtggaactggaaactga----gagtattactgcaattaagaaattgacaca |
254 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||| |||| || |||||||| | | | ||| |||| ||||||||| ||| ||| |
|
|
| T |
4299925 |
tttataatttggctttttaggtaaatgtgttgactctcatattgctgaagtaaaattggaaactaattaagggcattgctgccattaagaaactgaaaca |
4300024 |
T |
|
| Q |
255 |
aaagcaccttgagcaagacaagagggagctactaattggtgataatcaggatggagagaccaatgttgacgggtttgataatctgtcttctcccatgact |
354 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||| |||||||| | ||| | ||||| ||| || | |||||||| |||||| | || | | |
|
|
| T |
4300025 |
gaagcaccttaagcaagacaagagggagtggc--attg-tgataatcggtatgctgggaccagcgttaacatgcttgataattcatcttcttcgataaat |
4300121 |
T |
|
| Q |
355 |
gcttcagatgaccaaaatagtgttcgagtcatggaaaatgaaagtggattatgtgatgcgaaggtggttgattcagtt |
432 |
Q |
| |
|
||| ||| || |||||||| |||| |||| ||||||||| |||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
4300122 |
cctttagacgagcaaaatagcgttcaagtcgtggaaaatggaagtggattatgtgatgctaaagtggttgatccagtt |
4300199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 6665 - 6558
Alignment:
| Q |
179 |
aggtaaatgtgttgactcatattgctaaagtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag |
278 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| || ||| |||| | ||||||| ||| ||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
6665 |
aggtaaacgtgttgactcatgttgctgaagtgaaattgggttatgaggatgttactgccattgagaaattgatgccaaagaaccttgagcaagacaagag |
6566 |
T |
|
| Q |
279 |
ggagctac |
286 |
Q |
| |
|
||| |||| |
|
|
| T |
6565 |
ggaactac |
6558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University