View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13245_low_13 (Length: 472)

Name: NF13245_low_13
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13245_low_13
NF13245_low_13
[»] chr5 (32 HSPs)
chr5 (226-472)||(8806122-8806369)
chr5 (224-457)||(3654740-3654974)
chr5 (248-454)||(38915540-38915747)
chr5 (248-468)||(29789603-29789824)
chr5 (248-323)||(23318485-23318560)
chr5 (252-392)||(23151541-23151681)
chr5 (250-462)||(5121015-5121230)
chr5 (81-149)||(13820548-13820616)
chr5 (248-383)||(13820691-13820826)
chr5 (347-444)||(20891318-20891416)
chr5 (81-176)||(43170958-43171055)
chr5 (353-468)||(37134786-37134902)
chr5 (291-453)||(43171272-43171435)
chr5 (353-426)||(23319701-23319775)
chr5 (268-365)||(29150502-29150599)
chr5 (368-472)||(6769310-6769413)
chr5 (85-124)||(29789921-29789960)
chr5 (81-124)||(37135209-37135252)
chr5 (83-149)||(5578547-5578613)
chr5 (85-200)||(8805959-8806076)
chr5 (83-125)||(26402397-26402439)
chr5 (83-124)||(5120439-5120480)
chr5 (309-429)||(13826101-13826224)
chr5 (83-124)||(39537338-39537379)
chr5 (85-149)||(29150696-29150760)
chr5 (81-124)||(16686673-16686716)
chr5 (83-149)||(23962949-23963016)
chr5 (83-149)||(13490489-13490555)
chr5 (46-83)||(13820548-13820585)
chr5 (408-468)||(38491095-38491156)
chr5 (81-125)||(13825893-13825937)
chr5 (83-119)||(20891066-20891102)
[»] chr3 (23 HSPs)
chr3 (251-472)||(30190997-30191220)
chr3 (276-468)||(29713864-29714053)
chr3 (287-454)||(1424765-1424933)
chr3 (248-452)||(12893124-12893330)
chr3 (249-361)||(11830316-11830428)
chr3 (259-392)||(10992911-10993044)
chr3 (287-468)||(47185023-47185205)
chr3 (81-178)||(44879887-44879986)
chr3 (81-177)||(47185419-47185517)
chr3 (288-391)||(3917989-3918092)
chr3 (266-364)||(44663183-44663281)
chr3 (368-429)||(16876821-16876882)
chr3 (386-426)||(4127624-4127664)
chr3 (81-149)||(33100367-33100435)
chr3 (369-472)||(40145517-40145621)
chr3 (358-429)||(1698517-1698588)
chr3 (83-141)||(15760966-15761025)
chr3 (83-149)||(19157192-19157259)
chr3 (83-149)||(27941454-27941521)
chr3 (407-468)||(23044880-23044942)
chr3 (83-149)||(52448242-52448308)
chr3 (277-318)||(46947640-46947681)
chr3 (385-468)||(53472179-53472263)
[»] chr8 (19 HSPs)
chr8 (261-472)||(11648592-11648804)
chr8 (348-468)||(9382150-9382271)
chr8 (82-331)||(23231934-23232175)
chr8 (261-472)||(24190187-24190395)
chr8 (347-472)||(28374489-28374615)
chr8 (81-174)||(9381777-9381872)
chr8 (277-468)||(9137593-9137780)
chr8 (81-178)||(11648049-11648148)
chr8 (377-471)||(23232178-23232274)
chr8 (83-149)||(1981695-1981762)
chr8 (83-149)||(16729829-16729895)
chr8 (249-337)||(24682815-24682904)
chr8 (81-178)||(602067-602166)
chr8 (248-328)||(961163-961243)
chr8 (402-468)||(11994691-11994758)
chr8 (83-124)||(7263571-7263612)
chr8 (408-468)||(28509309-28509370)
chr8 (375-462)||(32073322-32073413)
chr8 (47-83)||(23231934-23231970)
[»] chr2 (27 HSPs)
chr2 (226-422)||(31548966-31549162)
chr2 (248-468)||(19091009-19091229)
chr2 (248-472)||(13597700-13597925)
chr2 (287-462)||(25621502-25621678)
chr2 (347-472)||(30386907-30387033)
chr2 (290-462)||(14904088-14904261)
chr2 (83-200)||(31548801-31548920)
chr2 (248-427)||(6883100-6883278)
chr2 (267-462)||(11199129-11199325)
chr2 (364-429)||(9057496-9057561)
chr2 (347-429)||(10023008-10023090)
chr2 (83-178)||(25621891-25621987)
chr2 (251-336)||(43673105-43673191)
chr2 (81-124)||(6883759-6883802)
chr2 (83-124)||(7444046-7444087)
chr2 (83-149)||(44322160-44322227)
chr2 (408-468)||(7880344-7880405)
chr2 (407-462)||(29303231-29303287)
chr2 (347-425)||(38566131-38566206)
chr2 (83-149)||(6221485-6221552)
chr2 (83-149)||(33015131-33015198)
chr2 (277-328)||(38422792-38422843)
chr2 (83-149)||(44313981-44314048)
chr2 (83-149)||(2554155-2554221)
chr2 (407-468)||(19678077-19678139)
chr2 (266-384)||(24484616-24484734)
chr2 (409-457)||(25416047-25416096)
[»] chr4 (25 HSPs)
chr4 (255-472)||(41509027-41509244)
chr4 (249-472)||(10373196-10373422)
chr4 (261-468)||(1843000-1843204)
chr4 (347-468)||(10142201-10142323)
chr4 (261-462)||(9921694-9921891)
chr4 (267-468)||(52459074-52459276)
chr4 (267-468)||(52460331-52460533)
chr4 (347-472)||(21320066-21320192)
chr4 (81-178)||(10142585-10142684)
chr4 (288-468)||(24611216-24611397)
chr4 (248-323)||(25201197-25201272)
chr4 (364-429)||(29282952-29283017)
chr4 (85-174)||(13957694-13957785)
chr4 (81-149)||(52460640-52460708)
chr4 (386-468)||(42512194-42512277)
chr4 (309-391)||(3665324-3665406)
chr4 (261-339)||(9896383-9896460)
chr4 (81-138)||(25201776-25201833)
chr4 (354-426)||(25201111-25201183)
chr4 (81-124)||(3665085-3665128)
chr4 (277-330)||(6830670-6830723)
chr4 (85-121)||(24611029-24611065)
chr4 (83-149)||(10094960-10095027)
chr4 (87-178)||(42511284-42511377)
chr4 (83-124)||(31915592-31915633)
[»] chr1 (22 HSPs)
chr1 (248-457)||(5509680-5509890)
chr1 (277-472)||(24185519-24185715)
chr1 (347-472)||(47559476-47559601)
chr1 (81-178)||(12028198-12028297)
chr1 (288-468)||(5209545-5209726)
chr1 (81-149)||(9023523-9023591)
chr1 (287-468)||(12027845-12028027)
chr1 (83-124)||(44310772-44310813)
chr1 (81-125)||(42055752-42055796)
chr1 (347-424)||(47397450-47397528)
chr1 (83-178)||(48646364-48646465)
chr1 (83-116)||(23664046-23664079)
chr1 (83-123)||(5208382-5208422)
chr1 (83-149)||(21906478-21906545)
chr1 (83-149)||(34307384-34307451)
chr1 (83-149)||(48596290-48596357)
chr1 (375-468)||(9023271-9023365)
chr1 (431-468)||(36296751-36296788)
chr1 (46-83)||(42055752-42055789)
chr1 (431-468)||(42722286-42722323)
chr1 (84-116)||(25095299-25095331)
chr1 (267-367)||(44310547-44310647)
[»] chr7 (25 HSPs)
chr7 (278-472)||(40934102-40934297)
chr7 (255-429)||(9420553-9420727)
chr7 (248-471)||(45445899-45446117)
chr7 (248-457)||(21863668-21863877)
chr7 (347-472)||(28460165-28460293)
chr7 (379-467)||(39038847-39038936)
chr7 (81-178)||(8113441-8113540)
chr7 (252-457)||(5770939-5771141)
chr7 (91-178)||(43178549-43178638)
chr7 (378-472)||(8604552-8604647)
chr7 (83-124)||(20394724-20394765)
chr7 (368-472)||(35118193-35118298)
chr7 (85-178)||(24441602-24441697)
chr7 (83-149)||(8389237-8389304)
chr7 (249-328)||(39038750-39038829)
chr7 (407-468)||(8069629-8069691)
chr7 (82-124)||(9420803-9420845)
chr7 (87-149)||(21863958-21864020)
chr7 (376-472)||(43179378-43179475)
chr7 (81-124)||(3123703-3123746)
chr7 (83-149)||(13754214-13754280)
chr7 (407-468)||(48238508-48238570)
chr7 (407-467)||(6189387-6189448)
chr7 (83-124)||(35477916-35477957)
chr7 (431-468)||(48636751-48636788)
[»] scaffold0002 (1 HSPs)
scaffold0002 (248-457)||(98176-98385)
[»] scaffold0263 (2 HSPs)
scaffold0263 (248-472)||(18424-18649)
scaffold0263 (81-149)||(18278-18346)
[»] chr6 (17 HSPs)
chr6 (83-176)||(1831209-1831304)
chr6 (88-189)||(15603721-15603824)
chr6 (252-424)||(22524816-22524988)
chr6 (287-468)||(11680721-11680903)
chr6 (89-178)||(11680417-11680508)
chr6 (83-149)||(1131873-1131939)
chr6 (347-425)||(19108034-19108112)
chr6 (81-142)||(13758522-13758583)
chr6 (81-124)||(15060267-15060310)
chr6 (83-149)||(22012054-22012121)
chr6 (89-124)||(26817743-26817778)
chr6 (83-125)||(1423078-1423120)
chr6 (83-149)||(18675452-18675518)
chr6 (408-468)||(33516611-33516672)
chr6 (83-149)||(34043643-34043710)
chr6 (83-149)||(20990538-20990604)
chr6 (309-457)||(26817425-26817575)
[»] scaffold1364 (2 HSPs)
scaffold1364 (248-407)||(968-1127)
scaffold1364 (81-125)||(1230-1274)
[»] scaffold1266 (2 HSPs)
scaffold1266 (248-468)||(1371-1592)
scaffold1266 (81-149)||(1672-1740)
[»] scaffold0160 (1 HSPs)
scaffold0160 (309-457)||(25187-25336)
[»] scaffold0385 (1 HSPs)
scaffold0385 (81-178)||(1036-1135)
[»] scaffold0178 (1 HSPs)
scaffold0178 (381-468)||(2387-2475)
[»] scaffold0116 (2 HSPs)
scaffold0116 (263-468)||(40874-41076)
scaffold0116 (81-112)||(41108-41139)
[»] scaffold0137 (1 HSPs)
scaffold0137 (288-391)||(21299-21402)
[»] scaffold0552 (1 HSPs)
scaffold0552 (277-330)||(10171-10224)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 226 - 472
Target Start/End: Original strand, 8806122 - 8806369
Alignment:
Q  226 ttagcacccgagaacaatagacccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaattta 325  Q
    ||||| || |||||||||||  |||| ||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||| ||||||||||| |    
T  8806122 ttagcgcctgagaacaataggtccacgtgatcctaaatgcgtctcacatcgatttcatgatcatgaatgcgtctcacatgattttgtattatcaaattca 8806221  T
Q  326 attttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttc 425  Q
    |||||| ||||||| ||||  ||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  8806222 attttgcaatccttttaatcaattcaagaaagttgacattactataatgatataatttaaatttttgaaacctttgaaagacaagattaaaattaatttc 8806321  T
Q  426 tcta-aaggcccattttcaagtaaaatataattagtttggttataaaa 472  Q
    | ||  |  | ||||||||| |||||||||||| |||| |||||||||    
T  8806322 tttactatactcattttcaactaaaatataatttgttttgttataaaa 8806369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 224 - 457
Target Start/End: Complemental strand, 3654974 - 3654740
Alignment:
Q  224 tattagcacccgagaacaatagacccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatt 323  Q
    |||| ||||| |||||||| ||   |||||||| ||||||| |||||| ||  ||||||||||||| |||||||||  ||| |||||||||| |||||||    
T  3654974 tattggcacctgagaacaacagggtcacatgattctaaatgtgtctcatatcagtttcatgatcataaatgcgtcttgcatgattttgcattctcaaatt 3654875  T
Q  324 taattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatt 423  Q
    |||||||| ||||  | ||||  ||||| ||||||||||||||| || || |||||||||||||||||  ||||||| ||||||||||||||||||| ||    
T  3654874 taattttgcaatctctttaatcaattcaagaaagttgacattactatgatgatataatttaatttttttgaacctttgaaagacaagattaaaattagtt 3654775  T
Q  424 tctcta-aaggcccattttcaagtaaaatataatt 457  Q
    ||||||  ||| |||||||||| ||||||||||||    
T  3654774 tctctagtaggtccattttcaactaaaatataatt 3654740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 248 - 454
Target Start/End: Original strand, 38915540 - 38915747
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||||||||||||| || ||  |||| |||||||||||||||| || ||| |||| ||||||||||||| ||||||| ||||||| | ||  |    
T  38915540 ccacatgatcctaaatgcgtcccacatcagtttaatgatcatgaatgcgtatcgcatgatttagcattatcaaattcaattttgcaatcctttttatcaa 38915639  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||  ||||||||||||||| ||||  |||||||||||||||||| ||||||| |||||||| ||||| | |||||||||||  ||||| |||||||| |    
T  38915640 ttctagaaagttgacattactataacgatataatttaattttttggaacctttgaaagacaacattaagactaatttctctagtaggcctattttcaact 38915739  T
Q  447 aaaatata 454  Q
    ||||||||    
T  38915740 aaaatata 38915747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 248 - 468
Target Start/End: Complemental strand, 29789824 - 29789603
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||| |||||||||||| || ||| ||||||||||||||| ||||| ||| || || |||||||| ||| |||| || || |||  ||||  |    
T  29789824 ccacatgatcccaaatgcgtctcacatcggtctcatgatcatgaatgtgtctcgcatgatcttacattatcatattcaattgtgcaaccctcttaatcaa 29789725  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||| |||||||||| |||| ||| | |||||||||| |||||||||| |||| ||| |||||||||| |||||||||||||  || ||||||||||| |    
T  29789724 ttcatgaaagttgacgttactatattgatataatttatttttttgaaatctttgaaaaacaagattaagattaatttctctagtagacccattttcaact 29789625  T
Q  447 aaaatataattagtttggttat 468  Q
    |||||| |||| |||| |||||    
T  29789624 aaaatagaatttgttttgttat 29789603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 23318485 - 23318560
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatt 323  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||||| |||| ||| ||||||||||||||||||    
T  23318485 ccacatgatcctaaatgcgtctcacattagtttcatgataatgaatgcatctcgcatgattttgcattatcaaatt 23318560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 23151681 - 23151541
Alignment:
Q  252 atgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattca 351  Q
    |||||| | ||||||||| | || |||||||||||||||||||| |||| ||| || ||||| ||||||||| ||||||| |||||||  |||  |||||    
T  23151681 atgatcatgaatgcgtcttacatcggtttcatgatcatgaatgcatctcgcatgatcttgcaatatcaaattcaattttgcaatcctttcaatcaattca 23151582  T
Q  352 cgaaagttgacattaccataattatataatttaattttttg 392  Q
     |||| ||||||||||  || | |||||||||| |||||||    
T  23151581 agaaatttgacattacagtattgatataatttatttttttg 23151541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 250 - 462
Target Start/End: Original strand, 5121015 - 5121230
Alignment:
Q  250 acatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataat-tttgcattatcaaatttaattttgtaatccttataatttat 348  Q
    |||||||||||||||||||||| ||    |||| |||||| |||| ||||  ||| || |||||||||||||||| |||| || |||||||  ||   ||    
T  5121015 acatgatcctaaatgcgtctcacatctagttcaggatcat-aatgtgtcttgcatgatctttgcattatcaaattcaattatgcaatcctttcaaacaat 5121113  T
Q  349 tcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaat--taatttctcta-aaggcccattttcaag 445  Q
    ||| |||||||||||| || ||| | |||||||||| ||||||  ||||||| |||||||||||||| ||  |||||||||||  ||||  ||||||||     
T  5121114 tcaagaaagttgacatcactatattgatataatttatttttttagaacctttgaaagacaagattaagattataatttctctagtaggctaattttcaat 5121213  T
Q  446 taaaatataattagttt 462  Q
    ||||||| |||| ||||    
T  5121214 taaaataaaatttgttt 5121230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 13820548 - 13820616
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |  |||||||||||||| |||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagagaacaacaacacatgtgaagtagactgaaattt 13820616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 383
Target Start/End: Original strand, 13820691 - 13820826
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    |||| |||||| ||||||| |||| || |||||||||| | |||||||||||  ||| || ||||| ||||||||| |||| || ||||||| ||||  |    
T  13820691 ccacgtgatcccaaatgcgcctcacatcggtttcatgaacgtgaatgcgtcttgcatgatgttgcactatcaaattcaattatgcaatccttttaatcaa 13820790  T
Q  348 ttcacgaaagttgacattaccataattatataattt 383  Q
    || | ||||||||||||||| ||| | |||||||||    
T  13820791 tttaagaaagttgacattactatattgatataattt 13820826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 444
Target Start/End: Original strand, 20891318 - 20891416
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaa-aggcccattttcaa 444  Q
    ||||| ||||||||||||| | ||| | |||||||||| ||||| | || |||| |||||||| ||||| |||||||||||||| ||||||||||||||    
T  20891318 attcaagaaagttgacatttctatattaatataatttattttttgggaatctttgaaagacaaaattaagattaatttctctaataggcccattttcaa 20891416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 43170958 - 43171055
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 176  Q
    |||||||||||||||||||||||||||||||| |  ||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||||    
T  43170958 agacaccaaaacaaaataaaatatcgtagaagcatggaacaatagcacatgcgaagtagactgtaattttagcacctaagaataataacacgaaaaaa 43171055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 468
Target Start/End: Complemental strand, 37134902 - 37134786
Alignment:
Q  353 gaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaat 451  Q
    |||| |||||||||| ||| | |||||||||| ||||| ||||||||| ||||||||||| ||||||||| | ||||  |||   |||||||| ||||||    
T  37134902 gaaaattgacattactatattgatataatttattttttcgaaacctttgaaagacaagatcaaaattaatatttctagtaggtgtattttcaactaaaat 37134803  T
Q  452 ataattagtttggttat 468  Q
    |||||| |||| |||||    
T  37134802 ataatttgttttgttat 37134786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 453
Target Start/End: Original strand, 43171272 - 43171435
Alignment:
Q  291 aatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaattttt 390  Q
    |||| ||||| ||| || |||||||||||||||||| | || |||| ||   ||  ||| | ||||||||||||||| ||| | || ||||||| |||||    
T  43171272 aatgtgtctcgcatgatcttgcattatcaaatttaactatgcaatcatttcgatcaattaaagaaagttgacattactatattgatgtaatttatttttt 43171371  T
Q  391 tgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatat 453  Q
    || ||||||| ||| | || ||||| |||||||||||||  ||| |||||||||| ||||||||    
T  43171372 tggaacctttgaaaaaaaaaattaagattaatttctctagtaggtccattttcaactaaaatat 43171435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 23319701 - 23319775
Alignment:
Q  353 gaaagttgacattaccataattatataatttaa-ttttttgaaacctttaaaagacaagattaaaattaatttct 426  Q
    ||||||||||||||| ||| | ||||||||||| |||||||||||| || |||||||| ||||| ||||||||||    
T  23319701 gaaagttgacattactatattgatataatttaatttttttgaaacccttgaaagacaaaattaagattaatttct 23319775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 29150599 - 29150502
Alignment:
Q  268 ctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacatt 365  Q
    |||| ||||||||||| |||||||||||||| ||||| || |||||||||||| || |||| || |||| ||  |||  ||||| |||||||||||||    
T  29150599 ctcatattggtttcataatcatgaatgcgtcacacatgatattgcattatcaacttcaattatgcaatcttttcaatcaattcaagaaagttgacatt 29150502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 472
Target Start/End: Original strand, 6769310 - 6769413
Alignment:
Q  368 cataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaatataattagtttggtta 467  Q
    |||||| |||||||||||||||||| ||  ||| |||||||| ||||||||||||||||    ||||  ||||| || |||||||||||| |||| ||||    
T  6769310 cataatgatataatttaattttttggaaaatttcaaagacaacattaaaattaatttct-agtaggcttatttttaactaaaatataatttgttttgtta 6769408  T
Q  468 taaaa 472  Q
    |||||    
T  6769409 taaaa 6769413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 29789960 - 29789921
Alignment:
Q  85 accaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  29789960 accaaaacaaaataaaatatcgtagaagtatagaacaata 29789921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 37135252 - 37135209
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  37135252 agacaccaaaacaacataaaatatcttagaagtagagaacaata 37135209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 5578547 - 5578613
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    |||||||||||||||||||||||||| |||||||||| ||||  || ||  |||||||||| |||||    
T  5578547 acaccaaaacaaaataaaatatcgtaaaagtagagaaaaatagcatatgcaaagtagactgaaattt 5578613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 8805959 - 8806076
Alignment:
Q  85 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttac 182  Q
    ||||||||||||||||||| |||||||||||| |||||||  | ||   |  || |||| | |||   ||||||||| ||||||||| ||||||||| ||    
T  8805959 accaaaacaaaataaaataccgtagaagtagataacaatagcaccttcaacatatactgaagttttagcacctaagagtaataacacaaaaaaagttgac 8806058  T
Q  183 attactaaacgcgtctca 200  Q
    ||||||||| ||||||||    
T  8806059 attactaaatgcgtctca 8806076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 26402439 - 26402397
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 125  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  26402439 acaccaaaacaaaataaaataccgtagaagtagcgaacaataa 26402397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 5120439 - 5120480
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  5120439 acaccaaaacaaaataaaataccgtagaagtatagaacaata 5120480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 13826101 - 13826224
Alignment:
Q  309 ttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataattta---attttttgaaacctttaaaag 405  Q
    ||||||||||||||| |||| || |||||||   ||  ||||| ||||||||||||||| ||| | ||||||||||   |||||||| ||  ||| | ||    
T  13826101 ttgcattatcaaattcaattatgaaatcctttcgatcaattcaagaaagttgacattactatattgatataatttatttattttttggaatttttgagag 13826200  T
Q  406 acaagattaaaattaatttctcta 429  Q
    |||||||||| |||||||| ||||    
T  13826201 acaagattaagattaatttatcta 13826224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 39537338 - 39537379
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  39537338 acaccaaaacaaaataaaatatcttagaagtagagaaaaata 39537379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 29150760 - 29150696
Alignment:
Q  85 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| |||| ||||||||| |||||| |  || ||||||||||| |||||    
T  29150760 accaaaacaaaataaaataccgtaaaagtagagagcaataacacttgcgaagtagactgaaattt 29150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 16686673 - 16686716
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  16686673 agacaccaaaacaaaataaaataccgtataagtatagaacaata 16686716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 23963016 - 23962949
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  23963016 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 23962949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 13490555 - 13490489
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    |||||||||||||||||||| ||||||||||| |||| ||||  |  || ||||||||||| |||||    
T  13490555 acaccaaaacaaaataaaatgtcgtagaagtatagaaaaatagcacatgcgaagtagactgaaattt 13490489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 13820548 - 13820585
Alignment:
Q  46 agacaccaaaagaaaataaaataccgtagaagttgaga 83  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagaga 13820585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 38491156 - 38491095
Alignment:
Q  408 aagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||| |||||||| ||||  |||||||||||||| |||||||||||| |||| |||||    
T  38491156 aagattaagattaatttatctagtaggcccattttcaactaaaatataatttgttttgttat 38491095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 13825893 - 13825937
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 125  Q
    |||||| ||||||||| |||||| |||| ||||||||||||||||    
T  13825893 agacacaaaaacaaaacaaaataccgtaaaagtagagaacaataa 13825937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 20891066 - 20891102
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaa 119  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  20891066 acaccaaaacaaaataaaatattgtagaagtaaagaa 20891102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 251 - 472
Target Start/End: Original strand, 30190997 - 30191220
Alignment:
Q  251 catgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattc 350  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||| ||||||| ||||  ||||    
T  30190997 catgatcctaaatgcgtctcacatcagtttcatgatcatgaatgcgtctcgcatgatttagcattatcaaattcaattttgcaatccttttaatcaattc 30191096  T
Q  351 acgaaagttgacattaccataattatataatttaa-ttttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaa 448  Q
    | ||||||||||||||| ||||||||||||||||| ||||||| ||| ||| |||||||| ||||| |||||||||||||  ||||| |||||||| |||    
T  30191097 aagaaagttgacattactataattatataatttaatttttttggaacatttgaaagacaacattaagattaatttctctagtaggcctattttcaactaa 30191196  T
Q  449 aatataattagtttggttataaaa 472  Q
    |||||||||  ||| |||||||||    
T  30191197 aatataatttcttttgttataaaa 30191220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 29714053 - 29713864
Alignment:
Q  276 ggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataatta 375  Q
    ||||||||||||||||||||||||||||| || ||||| ||| ||||| ||||||| |||||||  |||  ||||| |||| |||||||||| ||| | |    
T  29714053 ggtttcatgatcatgaatgcgtctcacatgatcttgcaatattaaattcaattttgcaatcctttcaatcaattcaagaaatttgacattacaatattga 29713954  T
Q  376 tataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||| ||||||| |||| |  |||||||||||||| |||||||||     |||| ||||||||| |||||||||||| |||| |||||    
T  29713953 tataatttatttttttggaaccatagaaagacaagattaagattaatttc---gtaggctcattttcaactaaaatataatttgttttgttat 29713864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 454
Target Start/End: Complemental strand, 1424933 - 1424765
Alignment:
Q  287 catgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaat 386  Q
    ||||||||||| || ||| |||| ||||||||||||| ||||||| ||||||| | ||  ||||  ||||||||||||||| ||||  ||||||||||||    
T  1424933 catgaatgcgtatcgcatgatttagcattatcaaattcaattttgcaatcctttttatcaattctagaaagttgacattactataacgatataatttaat 1424834  T
Q  387 tttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatata 454  Q
    |||||| ||||||| | |||||| ||||| |||||||||||||  ||||| |||||||| |||||||||    
T  1424833 tttttggaacctttgatagacaacattaagattaatttctctagtaggcctattttcaactaaaatata 1424765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 452
Target Start/End: Complemental strand, 12893330 - 12893124
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||| ||||| |||||| || |||||||| ||||||||||||| |  ||  || ||||||||||||||| |||| || ||||||| ||||  |    
T  12893330 ccacatgatcccaaatgtgtctcacatcggtttcataatcatgaatgcgttttgcaagatcttgcattatcaaattcaattatgcaatccttttaatcaa 12893231  T
Q  348 ttcacgaaagttgacattaccataattatataattta-attttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaag 445  Q
    |||| ||||||||||||||| ||  | ||||||||||  ||||||| ||  ||| ||||| ||||||||||||||||||||||  ||| ||||||||||     
T  12893230 ttcaagaaagttgacattactatgttgatataatttattttttttggaatatttgaaagataagattaaaattaatttctctagtaggtccattttcaac 12893131  T
Q  446 taaaata 452  Q
    |||||||    
T  12893130 taaaata 12893124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 249 - 361
Target Start/End: Original strand, 11830316 - 11830428
Alignment:
Q  249 cacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttat 348  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||  |||| ||||||||||||| ||||||| ||||||| ||||  ||    
T  11830316 cacatgatcctaaatgcgtctcacatcagtttcatgatcatgaatgtgtctcacaagatttagcattatcaaattcaattttgcaatccttttaatcaat 11830415  T
Q  349 tcacgaaagttga 361  Q
    ||| |||||||||    
T  11830416 tcaagaaagttga 11830428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 392
Target Start/End: Original strand, 10992911 - 10993044
Alignment:
Q  259 taaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagt 358  Q
    ||||||||| ||| || |||||||||||| |||||||||||| ||| || ||||| ||||||||| ||||||| |||||||  |||  ||||| ||||||    
T  10992911 taaatgcgtttcacatcggtttcatgatcttgaatgcgtctcgcatgatcttgcaatatcaaattcaattttgcaatcctttcaatcaattcaagaaagt 10993010  T
Q  359 tgacattaccataattatataatttaattttttg 392  Q
    ||||||||| ||| | |||||||||| |||||||    
T  10993011 tgacattacaatattgatataatttatttttttg 10993044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 468
Target Start/End: Complemental strand, 47185205 - 47185023
Alignment:
Q  287 catgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaat 386  Q
    |||||||| ||||||||| |||||| | ||||||||| || | || |||| ||  |||  ||||| ||||||||||||||  ||| | || ||||||  |    
T  47185205 catgaatgtgtctcacatgattttgtactatcaaattcaactatgcaatcatttcaatcaattcaagaaagttgacattattatattgatgtaatttgtt 47185106  T
Q  387 tttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||| ||||||| |||||||||||||| |||||||||||||   || |||||||||| |||||||||||| |||| |||||    
T  47185105 tttttggaacctttgaaagacaagattaagattaatttctctagtgggtccattttcaactaaaatataatttgttttgttat 47185023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 44879986 - 44879887
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || ||||||||||  |||||   ||||||||||||||||||||||| ||||    
T  44879986 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtagactaaaattttagcacctaagaataataacaccaaacaagt 44879887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 47185517 - 47185419
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaag 177  Q
    ||||| |||||||| |||||||||||||||| || |||||||||  |  |||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  47185517 agacatcaaaacaacataaaatatcgtagaaatatagaacaatagcaaatgtgaagtagactgaaattttgacacctaagaataataacaccagaaaag 47185419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 391
Target Start/End: Original strand, 3917989 - 3918092
Alignment:
Q  288 atgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaatt 387  Q
    ||||||||||||| ||| || ||||||||||||||| |||| |  ||| |||  |||  ||||| ||||||||||||||| ||| | |||||||||||||    
T  3917989 atgaatgcgtctcgcatgatcttgcattatcaaattcaattattcaattctttcaatcaattcaagaaagttgacattactatattgatataatttaatt 3918088  T
Q  388 tttt 391  Q
    ||||    
T  3918089 tttt 3918092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 364
Target Start/End: Original strand, 44663183 - 44663281
Alignment:
Q  266 gtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacat 364  Q
    |||||| || ||||||||||| |||||| |||||| ||| || ||||| ||||||||||||||||| |||||||  |||  ||||| |||| |||||||    
T  44663183 gtctcacatcggtttcatgataatgaatacgtctcgcatgatcttgcaatatcaaatttaattttgcaatcctttcaatcaattcaagaaatttgacat 44663281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 16876821 - 16876882
Alignment:
Q  368 cataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta 429  Q
    |||||| |||||||||||||||||| ||| ||| |||||||| ||||| |||||||||||||    
T  16876821 cataatgatataatttaattttttgcaacattttaaagacaacattaagattaatttctcta 16876882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 4127664 - 4127624
Alignment:
Q  386 ttttttgaaacctttaaaagacaagattaaaattaatttct 426  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  4127664 ttttttgaaacctttgaaagacaagattaagattaatttct 4127624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 33100367 - 33100435
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||||||  | ||||| ||||||||||||| |  || ||||||||||| |||||    
T  33100367 agacaccaaaacaaaataaaatgccttagaaatagagaacaataacacatgcgaagtagactgaaattt 33100435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 472
Target Start/End: Complemental strand, 40145621 - 40145517
Alignment:
Q  369 ataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggtta 467  Q
    ||||| ||||||||||||| |||| ||| ||||||| |||| ||||| |||||||| ||||  || |  ||||| || |||||||||||| |||| ||||    
T  40145621 ataatgatataatttaattctttggaacatttaaaaaacaacattaagattaatttttctattagacttattttgaactaaaatataatttgttttgtta 40145522  T
Q  468 taaaa 472  Q
    |||||    
T  40145521 taaaa 40145517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 1698588 - 1698517
Alignment:
Q  358 ttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta 429  Q
    |||||||||| ||| | |||||||||| ||| ||| || |||| |||||||||||||| |||||||| ||||    
T  1698588 ttgacattactatattgatataatttattttcttggaatctttcaaagacaagattaagattaatttatcta 1698517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 15761025 - 15760966
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagac 141  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  ||||||||||||    
T  15761025 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagac 15760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 19157259 - 19157192
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  19157259 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 19157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 27941454 - 27941521
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  27941454 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 27941521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 23044880 - 23044942
Alignment:
Q  407 caagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||| ||||||||||| |  |||||||||||||| |||||||||||| |||| |||||    
T  23044880 caagattaagattaatttctccagtaggcccattttcaactaaaatataatttgttttgttat 23044942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 52448308 - 52448242
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  52448308 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 52448242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 46947681 - 46947640
Alignment:
Q  277 gtttcatgatcatgaatgcgtctcacataattttgcattatc 318  Q
    ||||| |||||||||||||||||||||| || ||||||||||    
T  46947681 gtttcttgatcatgaatgcgtctcacatgatcttgcattatc 46947640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 468
Target Start/End: Complemental strand, 53472263 - 53472179
Alignment:
Q  385 attttttgaaacctttaaaagacaagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||| ||||||| ||| ||| |||||| |||||||| | ||  |||| ||||||||| |||||||||||| |||| |||||    
T  53472263 attttttggaacctttgaaatacatgattaagattaatttatgtagtaggctcattttcaactaaaatataatttgttttgttat 53472179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 261 - 472
Target Start/End: Original strand, 11648592 - 11648804
Alignment:
Q  261 aatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttg 360  Q
    ||||||||||| || ||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||| |||| || ||||  ||||| |||||||     
T  11648592 aatgcgtctcacatcggtttcatgatcatgaatgtgtctcgcatgattttgcattatcaaattcaattttgcaatcattttaatcaattcaagaaagtta 11648691  T
Q  361 acattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaag-gcccattttcaagtaaaatataattag 459  Q
    || |||  ||||| ||||||||||||| |||| ||||||| |||||||||||| | |||||||||||||| | | |||||||||| |||||||||||| |    
T  11648692 accttagtataatgatataatttaattatttggaacctttgaaagacaagattgagattaatttctctaatgagtccattttcaactaaaatataatttg 11648791  T
Q  460 tttggttataaaa 472  Q
    ||| |||||||||    
T  11648792 ttttgttataaaa 11648804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 348 - 468
Target Start/End: Original strand, 9382150 - 9382271
Alignment:
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaa-aggcccattttcaagt 446  Q
    |||| ||||||||||||||| ||| | || ||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||| ||| |||||||||| |    
T  9382150 ttcaagaaagttgacattactatattgatgtaatttaattttttggaacctttgaaagaaaagattaaaattaatttttctaataggtccattttcaact 9382249  T
Q  447 aaaatataattagtttggttat 468  Q
    ||||||||||| |||| |||||    
T  9382250 aaaatataatttgttttgttat 9382271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 82 - 331
Target Start/End: Original strand, 23231934 - 23232175
Alignment:
Q  82 gacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaatttac--acctaagaataataacaccaaaaaagtt 179  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| | ||  |||||| |||| |||||    |||||||||||||||||| ||||| |||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagagaacaataacacctacgaagtatactgaaattttagtacctaagaataataacacaaaaaaggtt 23232033  T
Q  180 tacattactaaacgcgtctcacgtcgatttcatgatnnnnnnnnta-ttagcacccgagaacaatagacccacatgatcctaaatgcgtctcaaattggt 278  Q
     ||||||||||| | ||||||           ||||        || ||| || | ||||| |||||  |||||||||||||||||||||||| || |||    
T  23232034 gacattactaaatgtgtctca-----------tgatccaaaaaataattaacagcggagaagaatagggccacatgatcctaaatgcgtctcacatcggt 23232122  T
Q  279 ttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttg 331  Q
    || ||||||||||||| || |||||| ||| |||||||||||||| |||||||    
T  23232123 tttatgatcatgaatgtgtttcacatgattctgcattatcaaattcaattttg 23232175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 261 - 472
Target Start/End: Original strand, 24190187 - 24190395
Alignment:
Q  261 aatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttg 360  Q
    |||| |||||| || || ||||||||| ||||||||||||  || || ||||| ||||| ||| ||||||| |||||||  |||  |||||  |||||||    
T  24190187 aatgtgtctcacatcggattcatgatcttgaatgcgtctcgtatgatcttgcaatatcatattcaattttgcaatcctttcaatccattcaaaaaagttg 24190286  T
Q  361 acattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaatataattagt 460  Q
    ||||||| ||| | |||||||||| |||||||||||| |  |||||||| ||||| ||||| |||     || | ||||||||| |||||||||||| ||    
T  24190287 acattacaatattgatataatttatttttttgaaaccatagaaagacaaaattaagattaacttc---gtagactcattttcaactaaaatataatttgt 24190383  T
Q  461 ttggttataaaa 472  Q
    || |||||||||    
T  24190384 tttgttataaaa 24190395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 472
Target Start/End: Original strand, 28374489 - 28374615
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaag 445  Q
    ||||| ||||||||| ||||| ||| | |||||||||||||||||  ||| ||||||| |||||||||| |||||||||||||  |  | |||||||||     
T  28374489 attcaagaaagttgaaattactatattgatataatttaatttttttgaacatttaaaaaacaagattaagattaatttctctagtaaactcattttcaac 28374588  T
Q  446 taaaatataattagtttggttataaaa 472  Q
    ||||||||||||  |||||||||||||    
T  28374589 taaaatataatttatttggttataaaa 28374615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 9381777 - 9381872
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 174  Q
    |||||||||||||||||||| ||||||||||||| |||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||    
T  9381777 agacaccaaaacaaaataaagtatcgtagaagtatagaacaatagcacatgcgaagtagactgaaattttagcacctaagaataataacacaaaaa 9381872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 9137780 - 9137593
Alignment:
Q  277 gtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattat 376  Q
    |||||||||||||||||||||||| ||| || || || ||| ||||| ||||||| |||||||  |||  ||||| |||  |||||||||  ||| | ||    
T  9137780 gtttcatgatcatgaatgcgtctcgcatgatcttacaatattaaattcaattttgaaatcctttcaatcaattcaagaattttgacattataatattgat 9137681  T
Q  377 ataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||| | ||||||  ||||||  |||||||||||||| |||||    |  | |||| ||||||||| |||||||||||| |||| |||||    
T  9137680 ataattaattttttttgaaccttagaaagacaagattaagattaa----tacataggctcattttcaactaaaatataatttgttttgttat 9137593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 11648049 - 11648148
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagt 178  Q
    |||||| ||||||||||||||||   || |||||| ||||||||| |  || ||||||||||| |||||   ||||||||||||||||||||||||||||    
T  11648049 agacacaaaaacaaaataaaatactataaaagtagtgaacaataacacatgcgaagtagactgaaattttagcacctaagaataataacaccaaaaaagt 11648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 23232178 - 23232274
Alignment:
Q  377 ataatttaattttttgaaacctttaaaagacaagattaaaattaatttc-tctaaaggcccattttcaagtaaaatataa-ttagtttggttataaa 471  Q
    |||||||||||||||| ||| ||| ||||| |||||||||||||||||| ||   |||| ||||||||| |||||||||| ||| ||||||||||||    
T  23232178 ataatttaattttttggaacatttgaaagaaaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaa 23232274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 1981762 - 1981695
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  || |||||||||||||| |||||    
T  1981762 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 1981695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 16729895 - 16729829
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |  || ||||||||||| |||||    
T  16729895 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgcgaagtagactgaaattt 16729829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 24682904 - 24682815
Alignment:
Q  249 cacatgatcctaaatgcgtctcaaattg-gtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatcc 337  Q
    ||||||||||||||||| | ||| || | |||||||||||||||||| ||||  ||| || ||||||||||||||| |||| || |||||    
T  24682904 cacatgatcctaaatgcatgtcacatcgtgtttcatgatcatgaatgtgtcttgcatcatcttgcattatcaaattcaattctgcaatcc 24682815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 602067 - 602166
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    ||||| |||||||||||||||||| || ||||||||||||||||  ||||   |||||  ||  |||||   || |||||||||||||||||||||||||    
T  602067 agacaacaaaacaaaataaaatattgttgaagtagagaacaatagcatctacaaagtaagcttaaattttagcaactaagaataataacaccaaaaaagt 602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 328
Target Start/End: Original strand, 961163 - 961243
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaatt 328  Q
    ||||||| ||||| |||| ||||| || |||||||||||||  |||||||| |||||| | ||| ||||||||||| ||||    
T  961163 ccacatggtcctacatgcatctcacatcggtttcatgatcacaaatgcgtcccacatattcttgtattatcaaattcaatt 961243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 468
Target Start/End: Original strand, 11994691 - 11994758
Alignment:
Q  402 aaagacaagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||| ||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||| |||||    
T  11994691 aaaggcaatattaagattaatttttctaataggcccattttcaagtaaaatattattcgttttgttat 11994758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 7263571 - 7263612
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  7263571 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 7263612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 28509370 - 28509309
Alignment:
Q  408 aagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||| |||||||| ||||  |||||||||||||| |||||||||||| |||| |||||    
T  28509370 aagattaagattaatttttctagtaggcccattttcaactaaaatataatttgttttgttat 28509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 462
Target Start/End: Complemental strand, 32073413 - 32073322
Alignment:
Q  375 atataatttaatt-ttttgaaacctttaaaagacaagattaaaattaatttctctaa---aggcccattttcaagtaaaatataattagttt 462  Q
    |||||||||| || ||||| ||||||| || ||||||||||| ||||||||||||||     | |||||||||| |||||||||||| ||||    
T  32073413 atataatttatttattttggaacctttgaacgacaagattaagattaatttctctaatatgtgtccattttcaactaaaatataattcgttt 32073322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 23231934 - 23231970
Alignment:
Q  47 gacaccaaaagaaaataaaataccgtagaagttgaga 83  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagaga 23231970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 226 - 422
Target Start/End: Original strand, 31548966 - 31549162
Alignment:
Q  226 ttagcacccgagaacaatagacccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaattta 325  Q
    ||||||||||||||||||||   ||||||||||||||||||||| | || ||||||||||||| ||||| || || ||| ||| |||||||||||||| |    
T  31548966 ttagcacccgagaacaatagggacacatgatcctaaatgcgtcttacatcggtttcatgatcacgaatgtgtttcgcatgattgtgcattatcaaattca 31549065  T
Q  326 attttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaat 422  Q
    |||||| |||| || ||||  |||||  |||||||||||||| ||||| |||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  31549066 attttgcaatctttttaatcaattcaaaaaagttgacattactataatgatataatttaattttttggaacctttgaaaaacaagattaaaattaat 31549162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 468
Target Start/End: Original strand, 19091009 - 19091229
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    |||||||||||||||||||||||  || |||||||||| | |||||||| ||| ||| || ||||||||||||||| ||||||  |||||||  |||  |    
T  19091009 ccacatgatcctaaatgcgtctcgcatcggtttcatgaacgtgaatgcgactcgcatgatcttgcattatcaaattcaatttttcaatcctttcaatcaa 19091108  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||| |||| |||||||||| ||| | ||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||  |||||||||||||| |    
T  19091109 ttcatgaaatttgacattactatattgatataattt-attttttgaaacctttgaaagataagattaagattaatttctctagtaggcccattttcaact 19091207  T
Q  447 aaaatataattagtttggttat 468  Q
    ||||||||||| |||| |||||    
T  19091208 aaaatataatttgttttgttat 19091229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 248 - 472
Target Start/End: Original strand, 13597700 - 13597925
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||| |||||||||||||||| ||  |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||| ||||  |    
T  13597700 ccacatgttcctaaatgcgtctcacatcagtttcatgatcatgaatgtgtctcgcatgattttgcattatcaaatttaattttgcaatccttttaatcaa 13597799  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaattt-ctctaaaggcccattttcaagt 446  Q
    || |  |||| ||| ||||| ||||| |||||||| ||||||||| | |||||||| ||||||||||| |||||||| ||    |||  ||||||||| |    
T  13597800 tttaaaaaagatgaaattactataatcatataattaaattttttggatcctttaaatgacaagattaatattaatttgcttagtaggttcattttcaact 13597899  T
Q  447 aaaatataattagtttggttataaaa 472  Q
    ||||||||||| |||| |||||||||    
T  13597900 aaaatataatttgttttgttataaaa 13597925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 462
Target Start/End: Complemental strand, 25621678 - 25621502
Alignment:
Q  287 catgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaat 386  Q
    |||||||| ||||| ||| || ||||||||||||||| || | || ||| |||  |||  ||||| ||||||||||||||| ||  |||||||||||| |    
T  25621678 catgaatgtgtctcgcatgatcttgcattatcaaattcaactatgcaattctttcaatcaattcaagaaagttgacattactatttttatataatttatt 25621579  T
Q  387 tttttgaaacctttaaaagacaagattaaaattaatttctc-taaaggcccattttcaagtaaaatataattagttt 462  Q
    ||||||||||||||||||||||||||||| |||||||| || |  ||| |||||||||| |||||||||||| ||||    
T  25621578 tttttgaaacctttaaaagacaagattaagattaatttatcttgtaggtccattttcaactaaaatataatttgttt 25621502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 347 - 472
Target Start/End: Complemental strand, 30387033 - 30386907
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaag 445  Q
    ||||| ||||||||||||||| ||| | |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||  | ||||||||| ||     
T  30387033 attcaagaaagttgacattactatattgatataatttaattttttggaacctttaaaagacaagattaagattaatttatctagtaagcccatttttaac 30386934  T
Q  446 taaaatataattagtttggttataaaa 472  Q
    |||||||||||| |||| |||||||||    
T  30386933 taaaatataatttgttttgttataaaa 30386907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 462
Target Start/End: Complemental strand, 14904261 - 14904088
Alignment:
Q  290 gaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaatttt 389  Q
    ||||| ||||| ||| || ||||||||||||||| ||   || |||||||  |||  ||||| ||||||||||||||| ||| | || ||||||| ||||    
T  14904261 gaatgtgtctcgcatgatcttgcattatcaaattcaaccatgcaatcctttcaatcaattcaagaaagttgacattactatattgatgtaatttattttt 14904162  T
Q  390 ttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagttt 462  Q
    ||| ||||||| ||||||||||||||||||||||| ||||  ||| | |||||||| |||||||||||| ||||    
T  14904161 ttgtaacctttgaaagacaagattaaaattaatttttctagtaggtctattttcaactaaaatataatttgttt 14904088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 31548801 - 31548920
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagttt 180  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |  || ||||||||||| |||||   |||| |||||||||||||| |||||||||     
T  31548801 acaccaaaacaaaataaaatatcatagaagtagagaacaatagcacttgcgaagtagactgaaattttaccaccaaagaataataacacaaaaaaagttg 31548900  T
Q  181 acattactaaacgcgtctca 200  Q
    |||||||||||  |||||||    
T  31548901 acattactaaattcgtctca 31548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 427
Target Start/End: Complemental strand, 6883278 - 6883100
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||  ||||  || ||| |||||||||||||||| ||||| ||||||| | || || ||| |||||||| |||| |  |||||||  |||  |    
T  6883278 ccacatgatctcaaatatgtttcacattggtttcatgatcaagaatgtgtctcacgtgatcttccataatcaaattcaattctagaatcctttcaatcaa 6883179  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctc 427  Q
    |||| ||||||||||||||| |||   || |||||| |||||||| ||||||||||| |||||||||| |||||||||||    
T  6883178 ttcaagaaagttgacattactatatcgatgtaattt-attttttggaacctttaaaaaacaagattaagattaatttctc 6883100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 267 - 462
Target Start/End: Original strand, 11199129 - 11199325
Alignment:
Q  267 tctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacatta 366  Q
    ||||| || |||||||| || |||| || || |||||| || ||| ||||||||||| |||| |  |||||||  |||  || || |||| |||||||||    
T  11199129 tctcacatcggtttcataatgatgagtgtgtttcacatgatcttgaattatcaaattcaattctacaatcctttcaatcaatacaagaaaattgacatta 11199228  T
Q  367 ccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagttt 462  Q
    | ||| | |||| ||||| |||||||||| |||| ||| |||||||||| |||||||||||||  | |||||||||||| ||||||| |||| ||||    
T  11199229 ctatattgatatgatttatttttttgaaatctttgaaaaacaagattaagattaatttctctagtatgcccattttcaactaaaatagaatttgttt 11199325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 9057561 - 9057496
Alignment:
Q  364 ttaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta 429  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||    
T  9057561 ttaccataatgatataatttaattttttggaacctttgaaagacaatattaagattaatttctcta 9057496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 429
Target Start/End: Complemental strand, 10023090 - 10023008
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta 429  Q
    ||||| ||||||||||||||  |||   |||||||||  ||||||||||||||||||||||| |||||| |||||||||||||    
T  10023090 attcaagaaagttgacattattatatagatataatttgtttttttgaaacctttaaaagacatgattaagattaatttctcta 10023008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 25621987 - 25621891
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaatttac--acctaagaataataacaccaaaaaagt 178  Q
    |||||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||| |||||    || |||||||||||||||||| |||||    
T  25621987 acaccaaaacaaaataaaatatcgtaaaagtatagaacaataatca-tgtgaagtagactgaaattttagaacttaagaataataacaccaacaaagt 25621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 43673105 - 43673191
Alignment:
Q  251 catgatcctaaatgcgtctcaaattg-gtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatc 336  Q
    ||||||| |||||| |||||| |||| |||||||||||| ||||| |||| |||| || ||||||||||||||| ||||||||||||    
T  43673105 catgatcgtaaatgtgtctcacattgtgtttcatgatcaagaatgtgtcttacatgatcttgcattatcaaattcaattttgtaatc 43673191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 6883802 - 6883759
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  6883802 agacaccaaaacaaaataagatatcgtagaagtagagaacaata 6883759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 7444087 - 7444046
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7444087 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 7444046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 44322160 - 44322227
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  44322160 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 44322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 468
Target Start/End: Original strand, 7880344 - 7880405
Alignment:
Q  408 aagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||| |||||||||||||  |||||||||||||| |||||||||||| |||| |||||    
T  7880344 aagattaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgttat 7880405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 29303287 - 29303231
Alignment:
Q  407 caagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagttt 462  Q
    ||||||||| |||||||||||||  |||||||||||||| |||||||||||| ||||    
T  29303287 caagattaagattaatttctctagtaggcccattttcaactaaaatataatttgttt 29303231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 38566131 - 38566206
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttc 425  Q
    ||||| |||| |||||||||| ||| | |||||||||   |||||||||||||  |||||||||||||| |||||||||    
T  38566131 attcaagaaatttgacattacaatattgatataattt---tttttgaaaccttagaaagacaagattaagattaatttc 38566206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 6221552 - 6221485
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  6221552 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 6221485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 33015131 - 33015198
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  33015131 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 33015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 38422792 - 38422843
Alignment:
Q  277 gtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaatt 328  Q
    |||||| ||||||||||| ||||||||| || ||||||||||||||| ||||    
T  38422792 gtttcacgatcatgaatgtgtctcacatgatcttgcattatcaaattcaatt 38422843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 44313981 - 44314048
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  44313981 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcaaatgtgaagtagactgaaattt 44314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 2554221 - 2554155
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||| ||||||| || |||||||||| ||||  |  |||||||||||||| |||||    
T  2554221 acaccaaaacaaaatgaaatatcctacaagtagagaaaaatagcacatgtgaagtagactgaaattt 2554155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 19678139 - 19678077
Alignment:
Q  407 caagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||| |||||||||||||  || ||||||||||| |||||||||||| |||| |||||    
T  19678139 caagattaagattaatttctctagtagacccattttcaactaaaatataatttgttttgttat 19678077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 384
Target Start/End: Complemental strand, 24484734 - 24484616
Alignment:
Q  266 gtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacatt 365  Q
    |||||| || |||||||| || ||||||||||||| | | || ||||| ||||||||| ||||||| ||| |||  ||   ||||| |||| ||||||||    
T  24484734 gtctcacatcggtttcattattatgaatgcgtctcgcttgatcttgcaatatcaaattcaattttgcaatgctttcaaccaattcaagaaatttgacatt 24484635  T
Q  366 accataattatataattta 384  Q
    || ||| | ||||||||||    
T  24484634 acaatattgatataattta 24484616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 25416047 - 25416096
Alignment:
Q  409 agattaaaattaatttctctaa-aggcccattttcaagtaaaatataatt 457  Q
    ||||||| |||||||||||||| ||| |||||||||| ||||||||||||    
T  25416047 agattaagattaatttctctaataggtccattttcaactaaaatataatt 25416096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 255 - 472
Target Start/End: Original strand, 41509027 - 41509244
Alignment:
Q  255 atcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacga 354  Q
    ||||||||||||||||| || |||||||||||| ||||   ||||| ||| ||||| |||||||||||| |||||||||||| || ||| | ||||| ||    
T  41509027 atcctaaatgcgtctcatatcggtttcatgatcgtgaacatgtctcgcatgattttccattatcaaattcaattttgtaatcattttaa-taattcaaga 41509125  T
Q  355 aagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaa-aggcccattttcaagtaaaatat 453  Q
    ||||||||||||| || || |||||||||||||||||| ||||||| ||| | |  ||||| |||||||||||||| ||||  |||||||| ||||||||    
T  41509126 aagttgacattactattatgatataatttaattttttggaacctttgaaaaagaccattaagattaatttctctaataggcagattttcaactaaaatat 41509225  T
Q  454 aattagtttggttataaaa 472  Q
    |||| |||| |||||||||    
T  41509226 aatttgtttagttataaaa 41509244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 249 - 472
Target Start/End: Original strand, 10373196 - 10373422
Alignment:
Q  249 cacatgatcctaaatgcgtctcaaattggtttcat-gatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||| ||||||||||| ||||| ||  ||||||  |||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||||||  |||  |    
T  10373196 cacattatcctaaatgcatctcatatcagtttcaacgatcatgaatacgtctcgcatgattttgcattattaaattcaattttgcaatcctttaaatcaa 10373295  T
Q  348 ttcacgaaagttgacattaccataattatataatttaa-ttttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaag 445  Q
    |||| ||||||||||||||  ||||| ||||||||||| ||||||| || ||||||| |||||||||||||||||||| ||||  ||| ||||||||||     
T  10373296 ttcaagaaagttgacattattataatgatataatttaatttttttggaagctttaaatgacaagattaaaattaatttttctagtaggtccattttcaac 10373395  T
Q  446 taaaatataattagtttggttataaaa 472  Q
    |||||||||||| ||||  ||||||||    
T  10373396 taaaatataatttgttttattataaaa 10373422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 261 - 468
Target Start/End: Original strand, 1843000 - 1843204
Alignment:
Q  261 aatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttg 360  Q
    |||| |||||| || | |||||||||| |||||||||||| ||| || ||||| ||||| ||| ||||||| | || ||  |||  ||||| ||||||||    
T  1843000 aatgtgtctcacatcgatttcatgatcttgaatgcgtctcgcatgatcttgcaatatcatattcaattttgcagtcttttcaatcaattcaagaaagttg 1843099  T
Q  361 acattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaatataattagt 460  Q
    ||||||| ||| |||||||||||| ||||||| ||||||  |||||||||||||| |||||||||   | |||| |||||||||  ||||||||||| ||    
T  1843100 acattacaatatttatataatttatttttttggaaccttagaaagacaagattaagattaatttc---ataggctcattttcaacaaaaatataatttgt 1843196  T
Q  461 ttggttat 468  Q
    || |||||    
T  1843197 tttgttat 1843204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 347 - 468
Target Start/End: Complemental strand, 10142323 - 10142201
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaag 445  Q
    ||||| ||||||||||||||| ||| | || ||||||| ||||||| ||||||||||||| |||||||| |||||||||||||  || ||||||||||||    
T  10142323 attcaagaaagttgacattactatattgatgtaatttatttttttgcaacctttaaaagataagattaagattaatttctctagtagacccattttcaag 10142224  T
Q  446 taaaatataattagtttggttat 468  Q
    |||||||||||| |||| |||||    
T  10142223 taaaatataatttgttttgttat 10142201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 462
Target Start/End: Original strand, 9921694 - 9921891
Alignment:
Q  261 aatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttg 360  Q
    ||||||||||| || |||||||||||| |||||  ||||| ||| || ||||| ||||| ||| ||||||| |||||||  |||  |||||  ||||||     
T  9921694 aatgcgtctcacatcggtttcatgatcttgaatatgtctcgcatgatcttgcaatatcatattcaattttgaaatcctttaaatcaattcaa-aaagttt 9921792  T
Q  361 acattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaatataattagt 460  Q
    ||||||| ||| | |||||||||| | ||||||||||||  |||||||||||||| |||||||||   | |||| ||||||||| |||||||||||| ||    
T  9921793 acattacaatattgatataatttattattttgaaaccttagaaagacaagattaagattaatttc---ataggctcattttcaactaaaatataatttgt 9921889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 468
Target Start/End: Complemental strand, 52459276 - 52459074
Alignment:
Q  267 tctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacatta 366  Q
    ||||| ||||||||||| || || |||| || |||||| || ||||||||||||||| |||| || |||||||   ||  | ||| ||||||||||||||    
T  52459276 tctcacattggtttcataatgataaatgtgtttcacatgatcttgcattatcaaattcaattctgcaatcctttctataaagtcaagaaagttgacatta 52459177  T
Q  367 ccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctct-aaaggcccattttcaagtaaaatataattagtttggt 465  Q
    |  || | |||||||||| ||||||| || |||| ||||||||||||||  |||||||||||   |||||||||||||| ||||||| |||| |||| ||    
T  52459176 ctgtattgatataatttatttttttggaatctttgaaagacaagattaaggttaatttctctggtaggcccattttcaactaaaatagaatttgttttgt 52459077  T
Q  466 tat 468  Q
    |||    
T  52459076 tat 52459074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 468
Target Start/End: Complemental strand, 52460533 - 52460331
Alignment:
Q  267 tctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacatta 366  Q
    ||||| ||||||||||| || || |||| || |||||| || ||||||||||||||| |||| || |||||||   ||  | ||| ||||||||||||||    
T  52460533 tctcacattggtttcataatgataaatgtgtttcacatgatcttgcattatcaaattcaattctgcaatcctttctataaagtcaagaaagttgacatta 52460434  T
Q  367 ccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctct-aaaggcccattttcaagtaaaatataattagtttggt 465  Q
    |  || | |||||||||| ||||||| || |||| ||||||||||||||  |||||||||||   |||||||||||||| ||||||| |||| |||| ||    
T  52460433 ctgtattgatataatttatttttttggaatctttgaaagacaagattaaggttaatttctctggtaggcccattttcaactaaaatagaatttgttttgt 52460334  T
Q  466 tat 468  Q
    |||    
T  52460333 tat 52460331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 472
Target Start/End: Complemental strand, 21320192 - 21320066
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaag 445  Q
    ||||| ||||||||||||||| ||| |  ||||||||||||||||| ||||||| ||| | |||||||| |||||||| ||||  | ||||||||||||     
T  21320192 attcaagaaagttgacattactatattggtataatttaattttttggaacctttgaaaaataagattaagattaatttatctagtaagcccattttcaac 21320093  T
Q  446 taaaatataattagtttggttataaaa 472  Q
    |||||||||||| |||| |||||||||    
T  21320092 taaaatataatttgttttgttataaaa 21320066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 10142684 - 10142585
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    |||||||||||||||||||||| ||||||||||| |||||||||  |  |||||||||||||| |||||   ||||| ||||||||||||||||||||||    
T  10142684 agacaccaaaacaaaataaaatgtcgtagaagtatagaacaatagcacatgtgaagtagactgaaattttagcacctgagaataataacaccaaaaaagt 10142585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 468
Target Start/End: Original strand, 24611216 - 24611397
Alignment:
Q  288 atgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaatt 387  Q
    ||||||| || |||||| || || |||||||||||| |||| || ||||| |  |||  ||||| ||||||||||| ||| ||| | ||| |||||| ||    
T  24611216 atgaatgtgtgtcacatgatcttccattatcaaattcaattctgcaatcccttcaatcaattcaagaaagttgacaatactatattaataaaatttattt 24611315  T
Q  388 ttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||| || |||| ||||||||||||||  ||||||| ||||  ||||| |||||||| ||||||| |||| |||| |||||    
T  24611316 ttttggaatctttgaaagacaagattaaggttaatttttctagtaggccaattttcaactaaaatagaatttgttttgttat 24611397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 25201272 - 25201197
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatt 323  Q
    |||||||||||||||| ||||||| ||   ||||||||||||||||||||||||||| ||  ||||||||||||||    
T  25201272 ccacatgatcctaaatacgtctcacatcattttcatgatcatgaatgcgtctcacatgatcatgcattatcaaatt 25201197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 29282952 - 29283017
Alignment:
Q  364 ttaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta 429  Q
    |||||||||| |||||||||||||||||| ||||||| ||| |||| ||||| |||||||||||||    
T  29282952 ttaccataatgatataatttaattttttggaacctttgaaaaacaatattaagattaatttctcta 29283017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 13957785 - 13957694
Alignment:
Q  85 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 174  Q
    |||||||||||||||||||||||||||||| |||||||||  |  ||  |||||||||| |||||   |||||||||||||||| |||||||    
T  13957785 accaaaacaaaataaaatatcgtagaagtatagaacaatagcacgtgcaaagtagactgaaatttgagcacctaagaataataataccaaaa 13957694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 52460708 - 52460640
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |  || ||||||||||| |||||    
T  52460708 agacaccgaaacaaaataaaataccgtagaagtagagaacaataacacatgcgaagtagactgaaattt 52460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 42512194 - 42512277
Alignment:
Q  386 ttttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||  |||  ||||||||| |||||||||||| |||| |||||    
T  42512194 ttttttgaaacctttgaaagacaagattaagattaatttctttagtaggttcattttcaactaaaatataatttgttttgttat 42512277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 3665324 - 3665406
Alignment:
Q  309 ttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaatttttt 391  Q
    ||||||||||||||| ||||||| |||||||  |||  ||||| ||||||||||||||| ||| | |||||||||| ||||||    
T  3665324 ttgcattatcaaattcaattttgcaatcctttcaatcaattcaagaaagttgacattactatattgatataatttattttttt 3665406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 9896383 - 9896460
Alignment:
Q  261 aatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatcctt 339  Q
    ||||||||||| || |||||||||| |||||||||||||| ||| || ||||| ||||||||| ||||||| |||||||    
T  9896383 aatgcgtctcacatcggtttcatgaacatgaatgcgtctcgcat-atcttgcaatatcaaattcaattttgcaatcctt 9896460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 25201833 - 25201776
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagta 138  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||| || |||||||    
T  25201833 agacaccaacacaagataaaataccgtagaagtagagaacaataatacctttgaagta 25201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 25201183 - 25201111
Alignment:
Q  354 aaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttct 426  Q
    |||||||||||||| ||| | |||||||||| ||||||| ||| ||| |||||||||||||| ||||| ||||    
T  25201183 aaagttgacattactatattgatataatttatttttttggaacttttgaaagacaagattaagattaaattct 25201111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 3665085 - 3665128
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  3665085 agacaccaaaacaaaataaaataccatagaagtagagaacaata 3665128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 6830670 - 6830723
Alignment:
Q  277 gtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaatttt 330  Q
    ||||||||||| | |||||||||||||| || ||||||||||||||| ||||||    
T  6830670 gtttcatgatcctaaatgcgtctcacatgatcttgcattatcaaattcaatttt 6830723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 24611029 - 24611065
Alignment:
Q  85 accaaaacaaaataaaatatcgtagaagtagagaaca 121  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24611029 accaaaacaaaataaaataccgtagaagtagagaaca 24611065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 10094960 - 10095027
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  10094960 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 10095027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 42511284 - 42511377
Alignment:
Q  87 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    ||||||| |||||||||||||||||||| |||||||||  |   |  |||||||||| |||||   ||||||| |||| |||||||||||||||    
T  42511284 caaaacataataaaatatcgtagaagtatagaacaatagcacacgcaaagtagactgaaattttagcacctaaaaatattaacaccaaaaaagt 42511377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 31915633 - 31915592
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||| | |||||||||| |||||||    
T  31915633 acaccaaaacaaaataaaataccatagaagtagacaacaata 31915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 248 - 457
Target Start/End: Original strand, 5509680 - 5509890
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||  |||| ||||||| ||  |||||||||| ||||||||||||||||| || ||||||||||||||| |||| || |||| || ||||  |    
T  5509680 ccacatgatctcaaatacgtctcacatcagtttcatgattatgaatgcgtctcacatgatcttgcattatcaaattcaattctgcaatctttttaatcaa 5509779  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||| ||||||||||||||| ||| | ||||||||||| |||||| || |||| |||||||||||||| |||||||| ||||  |||| ||||||||  |    
T  5509780 ttcaagaaagttgacattactatattgatataatttaaatttttggaatctttgaaagacaagattaagattaatttatctagtaggcacattttcatct 5509879  T
Q  447 aaaatataatt 457  Q
    |||||| ||||    
T  5509880 aaaatagaatt 5509890  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 472
Target Start/End: Original strand, 24185519 - 24185715
Alignment:
Q  277 gtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattat 376  Q
    ||||||||||||||||||||| | |||| |||||| ||||||||||| ||||||  ||||||| ||| | ||||| | ||||| ||||||| ||| | ||    
T  24185519 gtttcatgatcatgaatgcgttttacatgattttgtattatcaaattcaattttacaatccttttaactaattcaagcaagtttacattactatattgat 24185618  T
Q  377 ataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttataaaa 472  Q
    |||||||||||||||| ||| | | |||||||||||||| ||||||||  |||  || ||||||||||| |||||||||||| |||| |||||||||    
T  24185619 ataatttaattttttggaacttctgaaagacaagattaagattaattttgctagtagacccattttcaactaaaatataatttgttttgttataaaa 24185715  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 472
Target Start/End: Original strand, 47559476 - 47559601
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaag 445  Q
    ||||| ||||||||||||||| ||| | ||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||  | || |||||| ||     
T  47559476 attcaagaaagttgacattactatattgatataatttaattttttgaaa-ctttgaaagacaatattaagattaatttctctagtaagcacatttttaac 47559574  T
Q  446 taaaatataattagtttggttataaaa 472  Q
    |||||||||||| |||| |||||||||    
T  47559575 taaaatataatttgttttgttataaaa 47559601  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 12028297 - 12028198
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    |||||| |||||||||||||||||| |||||||| ||||||| || |  |||||||||||||| |||||   ||||||| ||||||||||||||||||||    
T  12028297 agacacaaaaacaaaataaaatatcctagaagtatagaacaacaacacatgtgaagtagactgaaattttagcacctaaaaataataacaccaaaaaagt 12028198  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 468
Target Start/End: Original strand, 5209545 - 5209726
Alignment:
Q  288 atgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaatt 387  Q
    ||||||| ||||| ||| || |||||||||||||||  |   || |||||||  |||  ||||| ||||||||||||||| ||| | || |||| || ||    
T  5209545 atgaatgtgtctcgcatgatcttgcattatcaaattcgaccatgcaatcctttcaatcaattcaagaaagttgacattactatattgatgtaatatattt 5209644  T
Q  388 ttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||||||| ||| |||||||||| |||||||||| ||  |||   |||||||| |||||||||||| |||| |||||    
T  5209645 ttttgaaacctttgaaaaacaagattaagattaatttctttagtaggtatattttcaactaaaatataatttgttttgttat 5209726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 9023591 - 9023523
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  || |||||| |||| |||||    
T  9023591 agacaccaaaacaaaataaaatatcgtaaaagtagagaacaataatacatgcgaagtatactgaaattt 9023523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 468
Target Start/End: Complemental strand, 12028027 - 12027845
Alignment:
Q  287 catgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttat-aatttattcacgaaagttgacattaccataattatataatttaa 385  Q
    |||||||| ||||| |||||| |||||||||||||||||| | || ||| ||| | |||  ||| | ||||| || |||||| |||   ||  ||||||     
T  12028027 catgaatgtgtctcgcataatcttgcattatcaaatttaactatgcaattcttttcaatcaattgaagaaagctggcattacaatatcgatgcaatttat 12027928  T
Q  386 ttttttgaaacctttaaaagacaagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||||| ||| |||||||||| |||||| ||||| |||| |||||    
T  12027927 ttttttgaa-cctttgaaagacaatattaagattaatttctctaataggtccattttcaactaaaatctaatttgttttgttat 12027845  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 44310813 - 44310772
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44310813 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 44310772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 42055752 - 42055796
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 125  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagagaacaataa 42055796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 47397450 - 47397528
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaatttttt-gaaacctttaaaagacaagattaaaattaattt 424  Q
    ||||| ||||||||||||||| ||| | |||||||||| |||||| | ||||||| |||||||||||||| ||||||||    
T  47397450 attcaagaaagttgacattactatattgatataatttattttttttggaacctttgaaagacaagattaagattaattt 47397528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 48646465 - 48646364
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaaca--ataata---tctgtgaagtagactgcaattta-cacctaagaataataacaccaaaaaa 176  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||||   | || ||| ||||||  | |||| ||||||||||||||||||||||||||    
T  48646465 acaccaacacaaaataaaatatcgtagaagtatagaacaatataatagattatgcgaaatagactaaattttagcacctaagaataataacaccaaaaaa 48646366  T
Q  177 gt 178  Q
    ||    
T  48646365 gt 48646364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 23664046 - 23664079
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtaga 116  Q
    ||||||||||||||||||||||||||||||||||    
T  23664046 acaccaaaacaaaataaaatatcgtagaagtaga 23664079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 5208382 - 5208422
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaat 123  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  5208382 acaccaaaataaaataaaatatcgtagaagtatagaacaat 5208422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 21906545 - 21906478
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  21906545 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 21906478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 34307384 - 34307451
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  |  ||||||||||| || |||||    
T  34307384 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcacatgtgaagtagaatgaaattt 34307451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 48596290 - 48596357
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  48596290 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 48596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 468
Target Start/End: Complemental strand, 9023365 - 9023271
Alignment:
Q  375 atataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||||| ||||||| || |||||||||||||||||    ||||||||||||  || | ||||||||| ||||||| |||| |||| |||||    
T  9023365 atataatttatttttttggaatctttaaaagacaagattttggttaatttctctagtagactcattttcaactaaaatagaatttgttttgttat 9023271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 36296788 - 36296751
Alignment:
Q  431 aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  36296788 aggcccattttcaactaaaatataatttgtttggttat 36296751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 42055752 - 42055789
Alignment:
Q  46 agacaccaaaagaaaataaaataccgtagaagttgaga 83  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagaga 42055789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 42722323 - 42722286
Alignment:
Q  431 aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  42722323 aggcccattttcaactaaaatataatttgtttggttat 42722286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 25095331 - 25095299
Alignment:
Q  84 caccaaaacaaaataaaatatcgtagaagtaga 116  Q
    ||||||||||||||||||||||||| |||||||    
T  25095331 caccaaaacaaaataaaatatcgtaaaagtaga 25095299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 44310647 - 44310547
Alignment:
Q  267 tctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacatta 366  Q
    ||||| || ||||| || || ||||||| || |||||| || ||||||||||||||| |||| || ||| |||  |||  ||||| ||||||||||||||    
T  44310647 tctcacatcggttttataatgatgaatgtgtttcacatgatcttgcattatcaaattcaattatgcaattctttcaatcaattcaagaaagttgacatta 44310548  T
Q  367 c 367  Q
    |    
T  44310547 c 44310547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 278 - 472
Target Start/End: Complemental strand, 40934297 - 40934102
Alignment:
Q  278 tttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattata 377  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||  ||||||| |||  || ||||  ||| | ||||||||||||||| ||||| |||    
T  40934297 tttcatgatcataaatgcatctcgcataattttgcattatcaaatccaattttgaaatttttttaatcaattgaagaaagttgacattactataatgata 40934198  T
Q  378 taatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttataaaa 472  Q
    |||||| |||||||| ||||||| |||||||||||||| ||||||||||| |  |  |||| |||||| ||||| |||||| |||| |||||||||    
T  40934197 taatttcattttttgtaacctttgaaagacaagattaagattaatttctccagtatacccaatttcaactaaaacataatttgttttgttataaaa 40934102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 429
Target Start/End: Complemental strand, 9420727 - 9420553
Alignment:
Q  255 atcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacga 354  Q
    |||| ||||||  |||| || |||||||||||||||||||| |||| ||| || ||||||||| ||||| |||| || |||| || ||||  ||||| ||    
T  9420727 atcccaaatgcacctcatatcggtttcatgatcatgaatgcctctcgcatgatcttgcattattaaattcaattctgcaatctttttaatcaattcaaga 9420628  T
Q  355 aagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta 429  Q
    ||||||||||||| | | | |||||||||| ||||||| || ||||||||||||||||||| |||| ||||||||    
T  9420627 aagttgacattactacattgatataatttatttttttggaatctttaaaagacaagattaagattattttctcta 9420553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 471
Target Start/End: Original strand, 45445899 - 45446117
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||  |||| ||||||| || |||||||||||||      |||||| ||| || ||||||||||||||| |||| |  |||| || ||||| |    
T  45445899 ccacatgatctcaaatacgtctcacatcggtttcatgatcac-----cgtctcgcatgatcttgcattatcaaattcaattctacaatctttttaattaa 45445993  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||  ||||| | ||||||| ||| | |||||||||  ||||||| ||||||| ||||| ||||||||||||||||||||||  ||||| |||||||| |    
T  45445994 ttcgagaaagctaacattactatattgatataatttt-ttttttggaacctttgaaagaaaagattaaaattaatttctctagtaggccaattttcaact 45446092  T
Q  447 aaaatataattagtttggttataaa 471  Q
    ||||||||||| ||||  |||||||    
T  45446093 aaaatataatttgttttcttataaa 45446117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 457
Target Start/End: Complemental strand, 21863877 - 21863668
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||| | |||||||||||| || | ||||||| ||| ||||| ||||| ||| || ||| ||||||||||| ||||||| |||| ||  |||  |    
T  21863877 ccacatgataccaaatgcgtctcacatcgatttcatggtcaagaatgtgtctcgcatgatcttggattatcaaattcaattttgcaatcatttcaatcaa 21863778  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    ||||  ||||||||||||||  || | ||||||||| |||||||| || |||| || |||| |||||| |||||||||||||   || |||||||||| |    
T  21863777 ttcaaaaaagttgacattactttattaatataattt-attttttggaatctttgaaggacatgattaagattaatttctctacttggtccattttcaact 21863679  T
Q  447 aaaatataatt 457  Q
    |||||||||||    
T  21863678 aaaatataatt 21863668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 472
Target Start/End: Original strand, 28460165 - 28460293
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaatttttt--gaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttca 443  Q
    ||||| ||||||||||||| | ||| | |||||||||||||||||  | |||||||||||||||| |||||||||||||| ||||  | |||||||||||    
T  28460165 attcaagaaagttgacattgctatattgatataatttaattttttttggaacctttaaaagacaatattaaaattaatttttctagtaagcccattttca 28460264  T
Q  444 agtaaaatataattagtttggttataaaa 472  Q
    | |||||||| ||| |||| |||| ||||    
T  28460265 actaaaatatcatttgttttgttaaaaaa 28460293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 39038847 - 39038936
Alignment:
Q  379 aatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggtta 467  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| ||||  ||||||||||| || |||||||||||| |||| ||||    
T  39038847 aatttaattttttgaaacctttaacagacaagattaagattaatttatctagtaggcccatttttaactaaaatataatttgttttgtta 39038936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 8113441 - 8113540
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || |||||| |||| |||||   ||||||||||||||||||| ||||||||    
T  8113441 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtacactgaaattttagcacctaagaataataacacaaaaaaagt 8113540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 457
Target Start/End: Complemental strand, 5771141 - 5770939
Alignment:
Q  252 atgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattca 351  Q
    |||||| | ||||| ||||| ||  ||||||||||||||||||| | || ||| || ||||| ||  ||||| | ||||| |||||||  |||  |||||    
T  5771141 atgatcatgaatgcatctcacatcagtttcatgatcatgaatgcatgtcgcatgatcttgcaatactaaattcatttttgcaatcctttcaatcaattca 5771042  T
Q  352 cgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaat 451  Q
     |||| |||||||||| ||| | |||||||||| | ||||| || |||  |||||||||||||| |||||||||     |||| ||||||||| ||||||    
T  5771041 agaaatttgacattacaatattgatataatttactcttttggaaacttagaaagacaagattaatattaatttc---gtaggctcattttcaactaaaat 5770945  T
Q  452 ataatt 457  Q
    ||||||    
T  5770944 ataatt 5770939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 43178549 - 43178638
Alignment:
Q  91 acaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    ||||||||||||||||||| |||| |||||||||  | || ||||||| ||| ||||||  ||||||||||| |||||||||||||||||    
T  43178549 acaaaataaaatatcgtaggagtaaagaacaatagcacctatgaagtaaactacaattttaacacctaagaacaataacaccaaaaaagt 43178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 472
Target Start/End: Original strand, 8604552 - 8604647
Alignment:
Q  378 taatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttataaaa 472  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||| || ||||  ||| | |||||||| ||||||||||||  ||| |||||||||    
T  8604552 taatttaattttttggaacctttgaaagacaagattaagattaacttatctagtaggtcaattttcaaataaaatataatttatttagttataaaa 8604647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 20394724 - 20394765
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20394724 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 20394765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 472
Target Start/End: Original strand, 35118193 - 35118298
Alignment:
Q  368 cataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggtt 466  Q
    |||||| ||||| |||||||||||| ||||||| |||||||| ||| | |||||||| | ||  ||||  |||||||| |||||||||||| |||| |||    
T  35118193 cataatgatatagtttaattttttggaacctttgaaagacaacattcagattaatttttttagtaggcttattttcaactaaaatataatttgttttgtt 35118292  T
Q  467 ataaaa 472  Q
    ||||||    
T  35118293 ataaaa 35118298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 24441602 - 24441697
Alignment:
Q  85 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    ||||||| | ||||||||||| |||||||| |||||||||  |  ||| |||||||||| ||| |  ||||||||||||||||||| |||||||||    
T  24441602 accaaaatagaataaaatatcatagaagtatagaacaatagcacatgtaaagtagactgaaatattaacacctaagaataataacagcaaaaaagt 24441697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 8389237 - 8389304
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  |||||||||||||| |||||    
T  8389237 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagactgaaattt 8389304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 39038750 - 39038829
Alignment:
Q  249 cacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaatt 328  Q
    |||||||||||||||| |||||| ||  |||||||||||| ||||  ||||| ||| || ||||||||||||||| ||||    
T  39038750 cacatgatcctaaatgtgtctcacatcagtttcatgatcaagaatatgtctcgcatgatcttgcattatcaaattcaatt 39038829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 8069691 - 8069629
Alignment:
Q  407 caagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||| |||||||||||||  |||||||||||||| |||||||||||| |||| |||||    
T  8069691 caagattaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgttat 8069629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 9420845 - 9420803
Alignment:
Q  82 gacaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  9420845 gacaccaacacataataaaatatcgtagaagtagagaacaata 9420803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 21864020 - 21863958
Alignment:
Q  87 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||| |||||||| || |||||    
T  21864020 caaaacaaaataaaataccgtagaagtagagaacaatagcacctgcgaagtagagtgaaattt 21863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 472
Target Start/End: Original strand, 43179378 - 43179475
Alignment:
Q  376 tataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttataaaa 472  Q
    |||||||||||||||   ||||||| ||||| |||||||| |||||||| | ||| || | |||||| || |||||||||||| |||| |||||||||    
T  43179378 tataatttaatttttgagaacctttgaaagataagattaagattaatttttttaatagactcatttttaactaaaatataatttgttttgttataaaa 43179475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 3123703 - 3123746
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||    
T  3123703 agacaccaaaacaaaataaaataccgtagaaatagataacaata 3123746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 13754280 - 13754214
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  13754280 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 13754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 48238570 - 48238508
Alignment:
Q  407 caagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    ||||||||| ||| |||||||||  |||||||||||||| |||||||||||| |||| |||||    
T  48238570 caagattaagatttatttctctagtaggcccattttcaactaaaatataatttgttttgttat 48238508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 6189387 - 6189448
Alignment:
Q  407 caagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggtta 467  Q
    ||||||||| |||||||||||||  | |||||||||||| |||||||||||| |||| ||||    
T  6189387 caagattaagattaatttctctagtatgcccattttcaactaaaatataatttgttttgtta 6189448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 35477916 - 35477957
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  35477916 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 35477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 48636788 - 48636751
Alignment:
Q  431 aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  48636788 aggcccattttcaactaaaatataatttgtttggttat 48636751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 248 - 457
Target Start/End: Original strand, 98176 - 98385
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||| |||||||||||| || |||||||| || ||||||| | ||| ||| || ||||||||||||||| || |||| |||||||   ||  |    
T  98176 ccacatgatcccaaatgcgtctcacatcggtttcataattatgaatgtg-ctcgcatgatcttgcattatcaaattcaaatttgcaatcctttcgatcaa 98274  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||| |||| |||||||||  ||| | |||||||||| ||||||| || |||| |||||||||||||| |||||||||||||  | || ||||||||| |    
T  98275 ttcaagaaatttgacattaatatattgatataatttatttttttggaatctttgaaagacaagattaagattaatttctctagcatgctcattttcaact 98374  T
Q  447 aaaatataatt 457  Q
    |||||| ||||    
T  98375 aaaatagaatt 98385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 472
Target Start/End: Original strand, 18424 - 18649
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||| |||||||||||| || | |||||| || ||||||  ||||| ||| || || |||||||||||| || | || ||||| |  |||  |    
T  18424 ccacatgatcccaaatgcgtctcacatcgatttcataattatgaatatgtctcgcatgatctttcattatcaaattcaaatatgcaatccattgaatcaa 18523  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||| |||| |||||||||| ||| | |||||||||| ||||||| || |||| |||||| ||||||| ||||| || ||||  |||| ||||||||| |    
T  18524 ttcaagaaatttgacattacaatattgatataatttatttttttggaatctttgaaagactagattaagattaagttttctagtaggctcattttcaact 18623  T
Q  447 aaaatataattagtttggttataaaa 472  Q
    |||||| |||| |||| |||||||||    
T  18624 aaaataaaatttgttttgttataaaa 18649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 18278 - 18346
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||| |||| |||||||||||| | ||||||||||||||||||| |  | |||||||||||| |||||    
T  18278 agacagcaaaccaaaataaaataccatagaagtagagaacaataacacttatgaagtagactgaaattt 18346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 1831304 - 1831209
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 176  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| |||||   || |||||||||||||||||||||||    
T  1831304 acaccaaaacaaaataaaataccgcagaagtagagaacaataacatctgcgaagtagactgaaattttagcatctaagaataataacaccaaaaaa 1831209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 15603721 - 15603824
Alignment:
Q  88 aaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttacatt 185  Q
    |||||||||||||||||| ||||||||||||||||||  | |||  ||||| | || |||||   |||||||||||||||||||||||||| ||||||||    
T  15603721 aaaacaaaataaaatatcatagaagtagagaacaatagcacctgcaaagtaaattgaaattttagcacctaagaataataacaccaaaaaactttacatt 15603820  T
Q  186 acta 189  Q
    ||||    
T  15603821 acta 15603824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 252 - 424
Target Start/End: Complemental strand, 22524988 - 22524816
Alignment:
Q  252 atgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattca 351  Q
    |||||| | |||| |||||| || ||||||||||||||||||| |||||| |||| |||||| | |  || | ||||||  |||| ||  |||  |||||    
T  22524988 atgatcatgaatgtgtctcacatcggtttcatgatcatgaatgtgtctcatataaatttgcaatgttgaagtcaattttacaatcttttcaatcaattca 22524889  T
Q  352 cgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaattt 424  Q
     |||||||| ||| || ||||| |||||||||| ||||||| |||||| ||||||||||||||| ||| ||||    
T  22524888 agaaagttgtcatcacaataatgatataatttatttttttggaaccttaaaaagacaagattaagattcattt 22524816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 468
Target Start/End: Original strand, 11680721 - 11680903
Alignment:
Q  287 catgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaat 386  Q
    |||||||| ||||  ||| || ||||||||||||||| || | || |||||||  |||  ||||| ||||||||||||||  ||| | || | ||||| |    
T  11680721 catgaatgtgtctagcatgatcttgcattatcaaattcaactatgcaatcctttcaatcaattcaagaaagttgacattattatattgatgtgatttatt 11680820  T
Q  387 tttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagtaaaatataattagtttggttat 468  Q
    | |||||||||||| ||||| |||||||| |||||||| ||||  |||  ||||||||| |||||||||||| |||| |||||    
T  11680821 tgtttgaaacctttgaaagataagattaagattaatttttctagtaggttcattttcaactaaaatataatttgttttgttat 11680903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 11680417 - 11680508
Alignment:
Q  89 aaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgca--atttacacctaagaataataacaccaaaaaagt 178  Q
    |||||||||||||||||||||||||| |||||||||  |  || |||||| |||| |  ||| |||||||||||||||||||||||||||||    
T  11680417 aaacaaaataaaatatcgtagaagtatagaacaatagcacatgcgaagtatactgaaatattaacacctaagaataataacaccaaaaaagt 11680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 1131939 - 1131873
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||| || |||||    
T  1131939 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagtacatgtgaagtagattgaaattt 1131873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 19108112 - 19108034
Alignment:
Q  347 attcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttc 425  Q
    ||||| ||||||||||||||| ||| | | |||||||| ||||||||||||||  ||||| |||||||| |||||||||    
T  19108112 attcaagaaagttgacattacaatattgaaataatttatttttttgaaaccttacaaagagaagattaagattaatttc 19108034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 13758522 - 13758583
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagact 142  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  |  |||||||||||||    
T  13758522 agacaccaaaacagaataaaataccgtagaagtagagaacaatagcacatgtgaagtagact 13758583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 15060310 - 15060267
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15060310 agacaccaaaacaaaataaaataccatagaagtagagaacaata 15060267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 22012054 - 22012121
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  22012054 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 22012121  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 26817778 - 26817743
Alignment:
Q  89 aaacaaaataaaatatcgtagaagtagagaacaata 124  Q
    ||||||||||||||||||||||||||||||||||||    
T  26817778 aaacaaaataaaatatcgtagaagtagagaacaata 26817743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 1423120 - 1423078
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 125  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  1423120 acaccaaaacaaaataaaatatcgtaggagtagagaaaaataa 1423078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 18675518 - 18675452
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    |||||||||||||||||||||||| || ||||||||| ||||| |  || ||||||||||| |||||    
T  18675518 acaccaaaacaaaataaaatatcgcaggagtagagaaaaataacacatgcgaagtagactgaaattt 18675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 468
Target Start/End: Original strand, 33516611 - 33516672
Alignment:
Q  408 aagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||||||| |||||||||||||  |||||||||||||| |||||||||||| |||| |||||    
T  33516611 aagattaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgttat 33516672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 34043710 - 34043643
Alignment:
Q  83 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  34043710 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 34043643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 20990604 - 20990538
Alignment:
Q  83 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  20990604 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 20990538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 457
Target Start/End: Complemental strand, 26817575 - 26817425
Alignment:
Q  309 ttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataat-ttaattttttgaaacctttaaaagac 407  Q
    ||||||||||||||| |||| || |||| ||  |||  ||||| ||||||| ||||||| ||| | ||| ||  ||  ||||||| || |||| ||||||    
T  26817575 ttgcattatcaaattcaattctgcaatcatttcaatcaattcaagaaagttaacattactatattgataaaaaatttgttttttggaatctttgaaagac 26817476  T
Q  408 aagattaaaattaatttctcta-aaggcccattttcaagtaaaatataatt 457  Q
    |||||||| |||||||||||||  | ||| |||||||| ||||||| ||||    
T  26817475 aagattaagattaatttctctagtatgcctattttcaactaaaatagaatt 26817425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 407
Target Start/End: Complemental strand, 1127 - 968
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||| ||||||||| || || |||||||| || ||||||||||||| ||| || ||| ||||||||||| || |||| |||| ||  |||  |    
T  1127 ccacatgatcccaaatgcgtcccacatcggtttcataattatgaatgcgtctcgcatgatcttgtattatcaaattcaaatttgcaatcatttcaatcaa 1028  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagac 407  Q
    |||| |||| |||||||||| ||| | |||||||||| ||||||| || |||| ||||||    
T  1027 ttcaagaaatttgacattactatattgatataatttatttttttggaatctttgaaagac 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 1274 - 1230
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 125  Q
    ||||| |||| |||||||||||| |||||||||||| ||||||||    
T  1274 agacatcaaaccaaaataaaataccgtagaagtagaaaacaataa 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 468
Target Start/End: Complemental strand, 1592 - 1371
Alignment:
Q  248 ccacatgatcctaaatgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataattta 347  Q
    ||||||||||| |||||||||||| || ||||| || || |||||| |||||| ||| || ||||||||| ||| | || | || ||||| |  |||  |    
T  1592 ccacatgatcccaaatgcgtctcacatcggttttataattatgaatacgtctcgcatgatcttgcattattaaagtcaaatatgcaatccattgaatcaa 1493  T
Q  348 ttcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctcta-aaggcccattttcaagt 446  Q
    |||| |||| |||||||||| ||| | |||||||||| | ||||| || |||| |||||| ||||||| ||||| || ||||  |||| ||||||||| |    
T  1492 ttcaagaaatttgacattacaatattgatataatttattattttggaatctttgaaagactagattaagattaagttttctagtaggctcattttcaact 1393  T
Q  447 aaaatataattagtttggttat 468  Q
    |||||| |||| |||| |||||    
T  1392 aaaatagaatttgttttgttat 1371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 1740 - 1672
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 149  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||| |  | |||||||||||| |||||    
T  1740 agacagcaaaccaaaataaaataccgtagaagtagagaacaataacacttatgaagtagactgaaattt 1672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 457
Target Start/End: Complemental strand, 25336 - 25187
Alignment:
Q  309 ttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaattttttgaaacctttaaaagaca 408  Q
    |||| |||||||||| |||| || |||||||  |||   |||| ||||||||||||||  ||| | |||||||||| |||| || ||||||| |||||||    
T  25336 ttgctttatcaaattcaattatgcaatcctttcaatcatttcaagaaagttgacattaatatattgatataatttatttttatggaacctttgaaagaca 25237  T
Q  409 agattaaaattaatttctctaa-aggcccattttcaagtaaaatataatt 457  Q
    ||||||  ||||| |||||||| | ||| |||||||| |||||| |||||    
T  25236 agattaggattaacttctctaatatgccaattttcaactaaaatttaatt 25187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 1135 - 1036
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 178  Q
    ||||||||||||||||||||||||| ||||| || |||||||||  |  ||  |||||||||  |||||  | ||||||||||||||||||| |||||||    
T  1135 agacaccaaaacaaaataaaatatcatagaaatatagaacaatagcacatgcaaagtagactaaaattttaaaacctaagaataataacacccaaaaagt 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 468
Target Start/End: Original strand, 2387 - 2475
Alignment:
Q  381 tttaattttttgaaacctttaaaagacaagattaaaattaatttctctaa-aggcccattttcaagtaaaatataattagtttggttat 468  Q
    |||| ||||||| || |||| |||||||||||||| |||||||||| ||| |||  ||||||||| |||||||||||| |||| |||||    
T  2387 tttatttttttggaaactttgaaagacaagattaagattaatttctataataggttcattttcaactaaaatataatttgttttgttat 2475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 468
Target Start/End: Complemental strand, 41076 - 40874
Alignment:
Q  263 tgcgtctcaaattggtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgac 362  Q
    ||||||||| || |||||||| || || |||||||||  | | || ||||| ||||||||| ||||||| ||| |||  ||   ||||| |||| |||||    
T  41076 tgcgtctcacatcggtttcattattataaatgcgtcttgcttgatcttgcaatatcaaattcaattttgcaatgctttcaaccaattcaagaaatttgac 40977  T
Q  363 attaccataattatataatttaattttttgaaacctttaaaagacaagattaaaattaatttctctaaaggcccattttcaagtaaaatataattagttt 462  Q
    ||||| ||| | |||||||||| | ||||  |||| |  |||||||||||||| ||||||||   |  || | ||||||||| |||||||||||| ||||    
T  40976 attacaatattgatataatttagtattttttaaccatagaaagacaagattaagattaattt---tgtagcctcattttcaactaaaatataatttgttt 40880  T
Q  463 ggttat 468  Q
     |||||    
T  40879 tgttat 40874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 112
Target Start/End: Complemental strand, 41139 - 41108
Alignment:
Q  81 agacaccaaaacaaaataaaatatcgtagaag 112  Q
    ||||||||||||||||||||||||||||||||    
T  41139 agacaccaaaacaaaataaaatatcgtagaag 41108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 391
Target Start/End: Original strand, 21299 - 21402
Alignment:
Q  288 atgaatgcgtctcacataattttgcattatcaaatttaattttgtaatccttataatttattcacgaaagttgacattaccataattatataatttaatt 387  Q
    ||||||||||||| ||| || ||||||||||||||| |||| |  ||| |||  |||  ||||| ||||||| ||||||  ||| | |||||||||||||    
T  21299 atgaatgcgtctcgcatgatcttgcattatcaaattcaattattcaattctttcaatcaattcaagaaagttcacattaatatattgatataatttaatt 21398  T
Q  388 tttt 391  Q
    ||||    
T  21399 tttt 21402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 10171 - 10224
Alignment:
Q  277 gtttcatgatcatgaatgcgtctcacataattttgcattatcaaatttaatttt 330  Q
    |||| |||||| | |||||||||||||| || ||||||||||||||| ||||||    
T  10171 gttttatgatcctaaatgcgtctcacatgatcttgcattatcaaattcaatttt 10224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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