View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_16 (Length: 452)
Name: NF13245_low_16
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 42376781 - 42376433
Alignment:
| Q |
20 |
ttcagaactatggattttgaagtgaccattgatattaggggaaagtttttccatcccttaattatttatgatcattttagcttagtagagtttgttagtg |
119 |
Q |
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| T |
42376781 |
ttcagaactatggattttgaagtgaccattgatattaggggaaagtttttccatcccttaattatttatgatcattttagcttagtagagtttgttagtg |
42376682 |
T |
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| Q |
120 |
actaaatttagcttggttactctccaactagatttagattttaagcttattttgnnnnnnnnncatatcttatactagtggaagatatatgttatgacct |
219 |
Q |
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| T |
42376681 |
actaaatttagcttggttacactccaactagatttagattttaagcttattttgtttttttttcatatcttatactagtggaagatatatgttatgacct |
42376582 |
T |
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| Q |
220 |
tgatatagtagttaaagtgtggtgagtgcaaatattgtaatgggtttgatttgaggtttgtgagtgttatagttagggtttgcagttttgaagaaacttg |
319 |
Q |
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| T |
42376581 |
tgatatagtagttaaagtgtggtgagtgcaaatattgtaatgggtttgatttgaggtttgtgagtgttatagttagggtttgcagttttgaagaaacttg |
42376482 |
T |
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| Q |
320 |
tactgtttgttaagtagtcaccttgtgagaaaataaagtcataaatatg |
368 |
Q |
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| T |
42376481 |
tactgtttgttaagtagtcaccttgagagaaaataaagtcataaatatg |
42376433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 20320820 - 20320899
Alignment:
| Q |
94 |
ttttagcttagtagagtttgttagtgactaaatttagcttggttactctccaactagatttagattttaagcttattttg |
173 |
Q |
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| T |
20320820 |
ttttagcttagtagagtttgatagtgactaaatttagcttggttactctccaacgatatttagattttaagctgattttg |
20320899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 34151565 - 34151644
Alignment:
| Q |
94 |
ttttagcttagtagagtttgttagtgactaaatttagcttggttactctccaactagatttagattttaagcttattttg |
173 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
34151565 |
ttttagcttagtagagtttgatagtgactaaatttagcttggttactctccaacgatatttagattttaagctgattttg |
34151644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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