View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_17 (Length: 440)
Name: NF13245_low_17
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_17 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 12552144 - 12551722
Alignment:
| Q |
18 |
atttcaatatcattttctacataagaaaaaacaagttaagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctg |
117 |
Q |
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| T |
12552144 |
atttcaatatcattttctacataagaaaaaacaagataagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatcag |
12552045 |
T |
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| Q |
118 |
tgaatttccctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttcc |
217 |
Q |
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| T |
12552044 |
tgaatttccctctcttgatatcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttcc |
12551945 |
T |
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| Q |
218 |
ccaatttccatggccatgtttgttgatataatcaatcagcttctcatcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggt |
317 |
Q |
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| T |
12551944 |
ccaatttccatggccatgtttgttgatataatcaatcagcttctcatcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggt |
12551845 |
T |
|
| Q |
318 |
gacctacccataataatattgcacaatgaattaatgttccaagacaaaactataggttataggaaacttagcataggttgcatattatgtgggattttat |
417 |
Q |
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| T |
12551844 |
gacctacccataataatattgcacaatgaattaatgttccaagacaaaactataggttataggaaacttagcataggttgcatattatgtgggattttat |
12551745 |
T |
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| Q |
418 |
aggtgtagtatgccatcattttt |
440 |
Q |
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| T |
12551744 |
aggtgtagtatgccatcattttt |
12551722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 1281457 - 1281336
Alignment:
| Q |
63 |
tacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtgaatttccctctcttgatgtcaggcctcaaataatttgtccacc |
162 |
Q |
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| T |
1281457 |
tacttatttccaagaactgaatgtaaattgatgatgagttcctcttcttcatcagaaaatttccctcttttaatatcaggacttaaataatttgtccatc |
1281358 |
T |
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| Q |
163 |
ttaacctacaactcttcccaca |
184 |
Q |
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| T |
1281357 |
ttaacctacaactctttccaca |
1281336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 1319261 - 1319436
Alignment:
| Q |
63 |
tacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtgaatttccctctcttgatgtcaggcctcaaataatttgtccacc |
162 |
Q |
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| T |
1319261 |
tacttatttccaagaactgaatgtaaattgatgatgagattttcttcttcatcagagaattttcctcttctaatatcaggccttagataattattccatc |
1319360 |
T |
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| Q |
163 |
ttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttccccaatttccatggccatgttt |
238 |
Q |
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| | ||||||||||| ||||| |||||||| || ||| | |||| ||| | || |||| |||||||||||||||| |
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| T |
1319361 |
taagtctacaactctttccacatctattcaatcctgcaagctttggaagagctctccaacttccatggccatgttt |
1319436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 2590895 - 2590846
Alignment:
| Q |
138 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacct |
187 |
Q |
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| T |
2590895 |
tcaggccttaaataatttatccatctcaacctacaactcttaccacacct |
2590846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 30007328 - 30007195
Alignment:
| Q |
105 |
tcttcttcatctgtgaatttccctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgtt |
204 |
Q |
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||||||||||||||||||| ||||| ||||| ||||| || ||||| || |||||||||| || ||||| |||||||| || ||||| || || | | |
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| T |
30007328 |
tcttcttcatctgtgaattgtcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatctgttcaatcctgctagct |
30007229 |
T |
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| Q |
205 |
ttgaaagtgttccccaatttccatggccatgttt |
238 |
Q |
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||| ||||| || |||| |||||||||||||||| |
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| T |
30007228 |
ttggaagtgctctccaacttccatggccatgttt |
30007195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 33695415 - 33695345
Alignment:
| Q |
120 |
aatttccctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctatt |
190 |
Q |
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| T |
33695415 |
aattttcctctcttaatatcaggccttaaataattggtccaccttagcctacaactctttccacatctatt |
33695345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 37962917 - 37962859
Alignment:
| Q |
138 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaacc |
196 |
Q |
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| T |
37962917 |
tcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaaacc |
37962859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 3910341 - 3910285
Alignment:
| Q |
263 |
atcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtga |
319 |
Q |
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|||||||||| | |||||||| |||||||||| ||||| || |||||||||||||| |
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| T |
3910341 |
atcttcttctggagtccatggacctttctttaaaccaactttgtcacaacatggtga |
3910285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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