View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_2 (Length: 778)
Name: NF13245_low_2
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 4632842 - 4632367
Alignment:
| Q |
19 |
aaatgtgatcaagtttccttattatttgataatggatttgagaacctgcctgagccttttcgactcttatagccttaaagagattcaacttgatgcattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4632842 |
aaatgtgatcaagtttccttattatttgataatggatttgagaacctgcctgagcctttttgactcttatagccttaaagagattcaacttgatgcattt |
4632743 |
T |
|
| Q |
119 |
gtaacatgttatttatgttataattcttatctcatttttgtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaaagaaaataaagatgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4632742 |
gtaacatgttatttatgttataattcttatctcatttttgtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaaagaaagtaaagatgc |
4632643 |
T |
|
| Q |
219 |
attatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaattacaagaaacaggttca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632642 |
attatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactc--atacaaataatgctgggaaaaaattacaagaaacaggttca |
4632545 |
T |
|
| Q |
319 |
actttcttgagtggattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctccccccactaactatagcatctcattct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632544 |
actttcttgagtggattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctccccccactaactatagcatctcattct |
4632445 |
T |
|
| Q |
419 |
ctcaaaattccatttttgaatccattcccaactatctcacatgtgacttctttatgagcagtattttagttgcatcag |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632444 |
ctcaaaattccatttttgaatccattcccaactatctcacatgtgacttctttatgagcagtattttagttgcatcag |
4632367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 556 - 768
Target Start/End: Complemental strand, 4632307 - 4632096
Alignment:
| Q |
556 |
caataagctcatgaatttataagatatttttaggcttatttcaataagctatcttggagataagctcaaataagttatttctataaaatctctaaaacta |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4632307 |
caataagctcatgaatttataagatatttttaggcttatttcaataagctatcttggagataagctcaa-taagttatttctataaaatctctaaaacta |
4632209 |
T |
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| Q |
656 |
tctcacaagttctgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgat |
755 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4632208 |
tctcacaagttctgatgctagagacgtgatcgccgggaaatcgaaagatttaaaagagaattctgaagagaaatggtatgtgattgatttgaaagatgat |
4632109 |
T |
|
| Q |
756 |
aagagtttgatga |
768 |
Q |
| |
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||||||||||||| |
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| T |
4632108 |
aagagtttgatga |
4632096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 592
Target Start/End: Complemental strand, 32443778 - 32443749
Alignment:
| Q |
563 |
ctcatgaatttataagatatttttaggctt |
592 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
32443778 |
ctcatgaatttataagatatttttaggctt |
32443749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 27590958 - 27590643
Alignment:
| Q |
19 |
aaatgtgatcaagtttccttattatttgataatggatttgagaacctgcctgagccttttcgactcttatagcct-taaagagattcaacttgatgcatt |
117 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
27590958 |
aaatgtgatcaaggctccttattatttgataatggatttgagaacctgcctgagccttttggactcttatagcctctaaagagattcaacttgatgcatt |
27590859 |
T |
|
| Q |
118 |
tgtaacatgttatttatgttataattcttatctcattttt-gtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaaagaaaataaagat |
216 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||||| |||||| |
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| T |
27590858 |
tgtaacatgttatttatgttgtaattcttatctcattttttgtgtgaaaggatgagatatttcaactcataaagctccaaatggcaaagaaagtaaagac |
27590759 |
T |
|
| Q |
217 |
gcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaattacaagaaacaggtt |
316 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||| || |
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| T |
27590758 |
gcattgtatgttttctgcaatatgcagagaaatcagtggattt--ctttgatcttactcatatacaaataatgctcgaaaaaaattacatgaaacatgtc |
27590661 |
T |
|
| Q |
317 |
caactttcttgagtggat |
334 |
Q |
| |
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|||||||||||||||||| |
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| T |
27590660 |
caactttcttgagtggat |
27590643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 668 - 768
Target Start/End: Complemental strand, 48250458 - 48250358
Alignment:
| Q |
668 |
tgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatg |
767 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
48250458 |
tgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatg |
48250359 |
T |
|
| Q |
768 |
a |
768 |
Q |
| |
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| |
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|
| T |
48250358 |
a |
48250358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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