View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_24 (Length: 364)
Name: NF13245_low_24
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 31788484 - 31788613
Alignment:
| Q |
72 |
ttgatcaacttggccttgactagtcaatgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttataatt |
171 |
Q |
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| T |
31788484 |
ttgatcaacttggccttgactagtcaatgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttataa-t |
31788582 |
T |
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| Q |
172 |
tcttcttcacaaacaaaaaataacgtgaagt |
202 |
Q |
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| T |
31788583 |
tcttcttcacaaacaaaaaataacgtgaagt |
31788613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 31788469 - 31788391
Alignment:
| Q |
1 |
tagtggtggtgggatgaccggggctactggtcatggtcatggacatcatcaacaacatcatggagttggagttgatcaa |
79 |
Q |
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| T |
31788469 |
tagtggtggtgggatgaccggtgctactggtcatggtcatggacatcatcaacaacatcatggagttggagttgatcaa |
31788391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 31788669 - 31788732
Alignment:
| Q |
280 |
tttgatgtggttaaggtggtgtaacatgttgtgtttttataggcaaatcaaagtatgtgacatg |
343 |
Q |
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| T |
31788669 |
tttgatgtggttgaggtggtggaacatgttgtgtttttataggcaaatcaaagtatgtgacatg |
31788732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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