View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_26 (Length: 322)
Name: NF13245_low_26
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 3569621 - 3569313
Alignment:
| Q |
1 |
aaacttgaggattagctgtatatgtagtcacacagccaaattatggcccactacattagcttgtctcctagcgaactctaccaatgagtttggacaagta |
100 |
Q |
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| T |
3569621 |
aaacttgaggattagctgtatatgtagtcactcagccaaattatggaccactacattagcttgtcttctagcgaactctaccaatgagtttggacaagta |
3569522 |
T |
|
| Q |
101 |
ttgttaatgagcatctgannnnnnnaatgtatcagtcacacaacacaacttgagatgnnnnnnnn-gttttatttccattaaaaattacaatatgtttgt |
199 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3569521 |
ttgttaatgagcatctgatttttttaatgtatcagtcacacaacacaacttgagatgaaaaaaaatgttttatttccattaaaaattacaatatgtttgt |
3569422 |
T |
|
| Q |
200 |
gttgttgtcatgtatatttcatgaccattataagcaagaaaatcaaagagaaagatatgaagaaaaaattacctaaacaatagtttacagggacatcata |
299 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3569421 |
gttgttgtcatgtatatttcatgaccattaaaagcaagaaaatcaaagagaaagatatgaagaaaaaattacctaaacaatagtttacaggga---cata |
3569325 |
T |
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| Q |
300 |
gatgtgtttcat |
311 |
Q |
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|||||||||||| |
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| T |
3569324 |
gatgtgtttcat |
3569313 |
T |
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