View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_27 (Length: 321)
Name: NF13245_low_27
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 130 - 321
Target Start/End: Original strand, 3569710 - 3569901
Alignment:
| Q |
130 |
ggattcatcttgactgtggatgtatctgattcttcaaaagatccatgcaaggatctgaaacatttaatagttgcctgaaattattgacaaaacatttcct |
229 |
Q |
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| T |
3569710 |
ggattcatcttgactgtggatgtatctgattcttcaaaagatccatgcaaggatctgaaacatttaatagttgcttgaaattattgacaaaacattttct |
3569809 |
T |
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| Q |
230 |
ttcccgtttgttcttggtcatatgtaattataaaactaaatttggaaagggttttatatttaccgaacaatattccataattagaggcaaag |
321 |
Q |
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| T |
3569810 |
ttcccgtttgttcttggtcatatgtaattatataactaaatttggaaagggttttatatttaccgaacaatattccataattagaggcaaag |
3569901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3569597 - 3569669
Alignment:
| Q |
1 |
acatatacagctaatcctcaagtttttgatgctgttccacattggtttcatgatattatcctgaatgaaatga |
73 |
Q |
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| T |
3569597 |
acatatacagctaatcctcaagtttttgatgttgttccacattgttttcatgatattatccttaatgaaatga |
3569669 |
T |
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