View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13245_low_3 (Length: 745)
Name: NF13245_low_3
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 18 - 733
Target Start/End: Complemental strand, 5380279 - 5379563
Alignment:
| Q |
18 |
acaatagtatagtatgcttctcaataaggaaaagataagagtgactattacttgtctaatacaacccaactagcttgtcctttcttggcttctgcagcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5380279 |
acaatagtatagtatgcttctcaataaggaaaagataagagtgactattacttgtctaatacaacccaactagcttgtcctttcttggcttctgcagcca |
5380180 |
T |
|
| Q |
118 |
ctgatccgcaaggtgatccggaaacaattttaatcctgacatttatctgttcgaaaaggtttaacatgaggattagtatcttcatcaatgaatttgcatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5380179 |
ctgatccgcaaggtgatccggaaacaattttaatcctgacatttatctgttcgaaaaggtttaacatgaggattagtatcttcatcaatcaatttgcatg |
5380080 |
T |
|
| Q |
218 |
aaccttttacacatcaaaaccaaggctactaaccttatttggatcatatacatcatggagctgaaggttcatctgagagcaagaatcagtgatatcactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5380079 |
aaccttttacacatcaaaaccaaggctactaaccttatttggatcatagacatcatggagctgaaggatcatctgagagcaagaatcagtgatatcactc |
5379980 |
T |
|
| Q |
318 |
ttctgctctaaaattgttcctggaggatacttcttaataccactggcacagtcaccagcaaatcttggaaaaccccattttctacctgtacaatagtaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5379979 |
ttctgctctaaaattgttcctggaggatacttcttaataccactggcacagtcaccagcaaatcttggaaaaccccattttctacctgtacaatagtaga |
5379880 |
T |
|
| Q |
418 |
aaaactgtcaattacatatgtttacattacaatttgcccctag-aaaaacaatagaatttaatttgtatacactgacaatgtaaaatagttttacacaat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5379879 |
aaaactgtcaattacatatgtttacattacaatttgccactagaaaaaacaatagagtttaatttgtatacactgacaatgtaaaatagttttacacaat |
5379780 |
T |
|
| Q |
517 |
caatataacaagtaaaaagaagcacaaaaccaaaagaaggaatcacctgaactttgtgaaggaacaaccactagaagtgtaatgcaatcaccaggttgaa |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5379779 |
caatataacaagtaaaaagaagcacaaaaccaaaagaaggaatcacctgaactttgtgaaggaacaaccaccagaagtgtaatgcaatcaccaggttgaa |
5379680 |
T |
|
| Q |
617 |
caacatgagtcagtgaccaaacaagagctgtcttcggaatttcctttgtcgatgccttaacagcaacaataaccttctcagcaccatcacagcctttctc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5379679 |
caacatgagtcagtgaccaaacaagagctgtcttcggaatttcctttgtcgatgccttaacagcaacaataaccttctcagcaccatcacagcctttctc |
5379580 |
T |
|
| Q |
717 |
ttgcttccccctcttct |
733 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5379579 |
ttgcttccccctcttct |
5379563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 561 - 725
Target Start/End: Original strand, 43074189 - 43074350
Alignment:
| Q |
561 |
acctgaactttgtgaaggaacaaccactagaagtgtaatgcaatcaccaggttgaacaacatgagtcagtgaccaaacaagagctgtcttcggaatttcc |
660 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||| |
|
|
| T |
43074189 |
acctgaactttgtgaaggtacaaccactagcaatgtaatgcaatcaccaggttgaacaacatgagttagagaccaaacaagagcactctttggaatttcc |
43074288 |
T |
|
| Q |
661 |
tttgtcgatgccttaacagcaacaataaccttctcagcaccatcacagcctttctcttgcttccc |
725 |
Q |
| |
|
| |||| ||||| ||||||||||||||||| ||||||||||| | ||||| || |||||||| |
|
|
| T |
43074289 |
t---tcgacgccttgacagcaacaataacctttccagcaccatcagaacctttttcatgcttccc |
43074350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 43073343 - 43073450
Alignment:
| Q |
60 |
gactattacttgtctaatacaacccaactagcttgtcctttcttggcttctgcagccactgatccgcaaggtgatccggaaacaattttaatcctgacat |
159 |
Q |
| |
|
||||||||||| |||||||| |||||| | ||||| |||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
43073343 |
gactattacttatctaatacgacccaattggcttgagctttcttggcttctgcggccactgctccacaaggtgatccagaaacaattttaatcctgacat |
43073442 |
T |
|
| Q |
160 |
ttatctgt |
167 |
Q |
| |
|
|||||||| |
|
|
| T |
43073443 |
ttatctgt |
43073450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 43073517 - 43073592
Alignment:
| Q |
239 |
aaggctactaaccttatttggatcatatacatcatggagctgaaggttcatctgagagcaagaatcagtgatatca |
314 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
43073517 |
aaggctactaaccttctttggatcatagacatcatggagctgaaggatcatttgagagcaagaatcagttatatca |
43073592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 702
Target Start/End: Original strand, 46538228 - 46538308
Alignment:
| Q |
618 |
aacatgagtcagtgaccaaacaagagctgtcttcggaatttcctttgtcgatgccttaacagcaacaataaccttctcagcacca |
702 |
Q |
| |
|
||||| ||||| ||||||||||||||| | ||| |||||||||||| |||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
46538228 |
aacataagtcaatgaccaaacaagagcagcctttggaatttccttt---gatgccttaacaacaacaat-accttctcagcacca |
46538308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 510
Target Start/End: Original strand, 7352094 - 7352132
Alignment:
| Q |
472 |
aatttaatttgtatacactgacaatgtaaaatagtttta |
510 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7352094 |
aatttaatttgtatacagtgacagtgtaaaatagtttta |
7352132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University