View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_32 (Length: 250)
Name: NF13245_low_32
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 49478525 - 49478755
Alignment:
| Q |
5 |
acaccaatggtttctattatatctagttctttagaaaaagaggttatgaggttatggtaatccaaaatctggtcataatgtaagtaaagtctaacttatg |
104 |
Q |
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| T |
49478525 |
acaccaatggtttctattagatctagttctttagaaaaagagg--------ttatggtaatccaaaatctggtcataatgtaagtaaagtctaactcatg |
49478616 |
T |
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| Q |
105 |
attgttcgttctataaccaaaatttgaacacaagttcttctaaatatttcaacactaataaaagttctttaaccatttgagttcaattatttaaatagta |
204 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49478617 |
attgttcattctataattaaaatttgaacacaagttcttctaaatatttcaacactaataaaagttctttaaccatttgagttcaattatttaaatagta |
49478716 |
T |
|
| Q |
205 |
actagtaagtctctcgttttaagtatacaatattcttcg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
49478717 |
actagtaagtctctcgttttaagtatacaatattcttcg |
49478755 |
T |
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