View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13245_low_35 (Length: 236)

Name: NF13245_low_35
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13245_low_35
NF13245_low_35
[»] chr4 (5 HSPs)
chr4 (15-233)||(8818627-8818847)
chr4 (46-219)||(10032578-10032751)
chr4 (125-219)||(18812561-18812655)
chr4 (140-234)||(8678659-8678755)
chr4 (186-219)||(18789220-18789253)
[»] scaffold0245 (2 HSPs)
scaffold0245 (46-236)||(11132-11324)
scaffold0245 (46-236)||(9510-9702)
[»] chr1 (2 HSPs)
chr1 (46-236)||(1284865-1285057)
chr1 (101-220)||(35891392-35891511)
[»] chr5 (1 HSPs)
chr5 (15-219)||(4897322-4897526)
[»] scaffold0229 (1 HSPs)
scaffold0229 (46-236)||(9838-10030)
[»] chr3 (4 HSPs)
chr3 (131-219)||(34143069-34143157)
chr3 (55-219)||(548138-548302)
chr3 (58-129)||(25836417-25836489)
chr3 (25-117)||(26667113-26667207)
[»] chr6 (4 HSPs)
chr6 (125-219)||(25050979-25051073)
chr6 (156-219)||(6257979-6258042)
chr6 (186-219)||(6271321-6271354)
chr6 (36-88)||(26857843-26857895)
[»] chr7 (1 HSPs)
chr7 (56-129)||(3232944-3233018)
[»] chr8 (3 HSPs)
chr8 (15-52)||(10884016-10884053)
chr8 (18-90)||(29456302-29456375)
chr8 (15-90)||(35674978-35675054)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 8818847 - 8818627
Alignment:
Q  15 ataaatcatggttagttaatagtaaattagagttagttcattggttaagtagttaggaattagttagactaactcatctttataaaaactctcatcattg 114  Q
    |||||||||||||||||||||||||| ||||||| |||  |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||     
T  8818847 ataaatcatggttagttaatagtaaactagagtttgtttgttggttaagtagttaaaaattagttagactaactcatctttataaaaactcttatcatta 8818748  T
Q  115 tactttcttattatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatctt 214  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  8818747 tactttcctattatccttttctatctaattcaatataaatcataaggattattcctttgtatcaatctctcatgcctacttctcctataaacttcatctt 8818648  T
Q  215 ca--tcttcgatcctatcatt 233  Q
    ||  |||||||||| ||||||    
T  8818647 catctcttcgatccgatcatt 8818627  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 10032751 - 10032578
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| || |  |||||||||||||| | | ||||| ||||||||  |||||||| |||  ||||| |||||  |||||||    
T  10032751 gttagttggttggttaggtagttaagagtcggttagactaactcaccct-ataaataactctcactattgtactctctagttatctttttcattctaatt 10032653  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    |||||| ||||| ||||| |||| |||||| || ||| || ||||||||||||||||| ||||||||||||||||    
T  10032652 caatatgaattacaaggactattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatct 10032578  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 18812655 - 18812561
Alignment:
Q  125 ttatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||| ||||| |||||||||||||| ||||| ||||||||||  ||||| || ||| |||||||||||||||||||| ||||||||||||||||    
T  18812655 ttatctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctcatgcctacttctcctatgaacttcatcttcatct 18812561  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 8678659 - 8678755
Alignment:
Q  140 taattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatc--ttcgatcctatcattt 234  Q
    ||||| ||||| ||||| ||||||||||||||  | || |||  ||| ||||||||||||||| || ||||||||||||  ||||||||||||||||    
T  8678659 taattgaatatgaattacaaggattatttcttattttctacctatcaagcctacttctcctatgaatttcatcttcatctattcgatcctatcattt 8678755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 18789253 - 18789220
Alignment:
Q  186 atgcctacttctcctataaacttcatcttcatct 219  Q
    ||||||||||||||||| ||||||||||||||||    
T  18789253 atgcctacttctcctatgaacttcatcttcatct 18789220  T

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Target: scaffold0245 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 11132 - 11324
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| || ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  11132 gttagttggttggttaggtagttaagagttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 11230  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttca--tcttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| |||||| || ||| || | ||||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  11231 caatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctcttcgatcctatcgtttct 11324  T

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Target: scaffold0245; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 9510 - 9702
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| |  ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  9510 gttagttggttggttaggtagttaagtgttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 9608  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatc--ttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| || ||| || ||| || | ||||||||||||||| |||||||||||| ||  |||||||||||| |||||    
T  9609 caatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttcgtctattcgatcctatcgtttct 9702  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 1284865 - 1285057
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| || ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  1284865 gttagttggttggttaggtagttaagagttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 1284963  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttca--tcttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| |||||| || ||| || | ||||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  1284964 caatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctcttcgatcctatcgtttct 1285057  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 35891511 - 35891392
Alignment:
Q  101 aactctcatcattgtactttcttattatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcct 200  Q
    |||||||| | || |||| |||| || ||||||||   |||||||||||||||| | |||||||||| ||||||||||||| |||||| |||||||||||    
T  35891511 aactctcacctttttactctcttgttgtccttttcatcctaattcaatataaatgacaaggattattcctttgtatcaacctctcatgtctacttctcct 35891412  T
Q  201 ataaacttcatcttcatctt 220  Q
    || ||||||| ||| |||||    
T  35891411 atgaacttcacctttatctt 35891392  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 4897526 - 4897322
Alignment:
Q  15 ataaatcatggttagttaatagtaaattagagttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcatt 113  Q
    ||||| ||| ||||| |||| ||||| ||  |||||||  ||| ||| ||||||| || ||||||||||||||||| | | ||||| ||||||||  |||    
T  4897526 ataaaccatagttagataatggtaaactatggttagttggttgattaggtagttaagagttagttagactaactcaccct-ataaataactctcaatatt 4897428  T
Q  114 gtactttcttattatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatct 213  Q
    ||||| |||  ||| | |||||  ||||||||||||| ||||| |||||||||| |||||| || ||| || ||||||||||||||||| || |||||||    
T  4897427 gtactctctagttagctttttcattctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaagttcatct 4897328  T
Q  214 tcatct 219  Q
    ||||||    
T  4897327 tcatct 4897322  T

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Target: scaffold0229 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 9838 - 10030
Alignment:
Q  46 gttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaatt 144  Q
    |||||||  ||||||| ||||||| |  ||||||||||||||||| | | ||||| |||| |||  |||||||| |||  ||||| ||||| ||||||||    
T  9838 gttagttggttggttaggtagttaagtgttagttagactaactcaccct-ataaataactatcactattgtactctctagttatctttttcaatctaatt 9936  T
Q  145 caatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatc--ttcgatcctatcatttct 236  Q
    |||||| ||||| |||||||||| || ||| || ||| || | ||||||||||||||| |||||||||||| ||  |||||||||||| |||||    
T  9937 caatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttcgtctattcgatcctatcgtttct 10030  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 34143069 - 34143157
Alignment:
Q  131 ttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||| |||||||||||||| ||||| |||||||||| |||||| || ||| || ||||||||||||||||| ||||||| ||||||||    
T  34143069 ttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaacttcaccttcatct 34143157  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 548138 - 548302
Alignment:
Q  55 ttggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatccttttctatctaattcaatataaa 153  Q
    ||||||| ||||||| || ||||||||||||||||| |  |||||| |||| | |  |||||||| ||| |||||| |||||  ||||||||||||| ||    
T  548138 ttggttaggtagttaagagttagttagactaactca-cactataaataactttaaatattgtactctctaattatctttttcattctaattcaatatgaa 548236  T
Q  154 ttataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||| |||||||||| |||||| || | | || ||| | ||||||||||| || |||||||||||||    
T  548237 ttacaaggattattcctttgtttctatctctaatgtccacttctcctatgaagttcatcttcatct 548302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 25836417 - 25836489
Alignment:
Q  58 gttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatc 129  Q
    |||| |||||||||| ||||||||||||  ||||| ||||||| |||||||| ||||||||| |||| |||||    
T  25836417 gttaggtagttaggagttagttagactagttcatccttataaataactctcaccattgtactctcttgttatc 25836489  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 26667207 - 26667113
Alignment:
Q  25 gttagttaata-gtaaattagagttagttcattggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtac 117  Q
    ||||||||||| ||||||||  |||||||  || |||| ||||||| || ||||||||||||||||| |  |||||| |||||||| ||||||||    
T  26667207 gttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataactctcaccattgtac 26667113  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 25050979 - 25051073
Alignment:
Q  125 ttatccttttctatctaattcaatataaattataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||| ||||| || ||||||||||| ||||| || ||||||| |||||| || ||| || ||||||||||||||||| ||||||||||||||||    
T  25050979 ttatctttttcaatttaattcaatatgaattacaaagattattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatct 25051073  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 6257979 - 6258042
Alignment:
Q  156 ataaggattatttctttgtatcaaccgctcatgcctacttctcctataaacttcatcttcatct 219  Q
    ||||||| |||| ||||||||||| |  ||| ||||||||||||||| || |||||||||||||    
T  6257979 ataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaattcatcttcatct 6258042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 6271354 - 6271321
Alignment:
Q  186 atgcctacttctcctataaacttcatcttcatct 219  Q
    ||||||||||||||||| ||||||||||||||||    
T  6271354 atgcctacttctcctatgaacttcatcttcatct 6271321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 26857843 - 26857895
Alignment:
Q  36 gtaaattagagttagttcattggttaagtagttaggaattagttagactaact 88  Q
    |||||||||||||| ||  ||||||| ||||||| || |||||||||||||||    
T  26857843 gtaaattagagttaattggttggttaggtagttaagagttagttagactaact 26857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 3232944 - 3233018
Alignment:
Q  56 tggttaagtagttaggaattagttagactaactcatctttataaa-aactctcatcattgtactttcttattatc 129  Q
    |||||| ||||||| || || |||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  3232944 tggttaggtagttaagagtttgttacactaactcatccttataaataactctcatcattgtattttcttattatc 3233018  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 10884016 - 10884053
Alignment:
Q  15 ataaatcatggttagttaatagtaaattagagttagtt 52  Q
    |||||||||||||||||||||||||| |||||||||||    
T  10884016 ataaatcatggttagttaatagtaaactagagttagtt 10884053  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 29456375 - 29456302
Alignment:
Q  18 aatcatggttagttaata-gtaaattagagttagttcattggttaagtagttaggaattagttagactaactca 90  Q
    |||||| |||||| |||| ||||| || |||||||| |||||||| ||||||| || ||| |||||||||||||    
T  29456375 aatcatagttagtcaataagtaaactatagttagttaattggttaggtagttatgagttatttagactaactca 29456302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 35675054 - 35674978
Alignment:
Q  15 ataaatcatggttagttaata-gtaaattagagttagttcattggttaagtagttaggaattagttagactaactca 90  Q
    ||||||||| ||||||||||| ||||| ||  |||||||  || ||||  ||||||||| |||||||||||||||||    
T  35675054 ataaatcatagttagttaatatgtaaactatggttagttggttagttagatagttaggagttagttagactaactca 35674978  T

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