View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_36 (Length: 236)
Name: NF13245_low_36
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_36 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 6152047 - 6151828
Alignment:
| Q |
17 |
aactactcggcgaagggtcaacttgtaaaccttgattagaagtttcacctctagttaatggatcaggtgatctacttctctttaaccgtgaactagcacg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6152047 |
aactactcggcgaagggtcaacttgtaaaccttgattagaagtttcacctctagttaatggatcatgtgatctacttctctttaaccgtgaactagcacg |
6151948 |
T |
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| Q |
117 |
aaacaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactcca |
216 |
Q |
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| T |
6151947 |
aaacaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactcca |
6151848 |
T |
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| Q |
217 |
cttctttgaaaatcagatcc |
236 |
Q |
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|||||||||||||||||||| |
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| T |
6151847 |
cttctttgaaaatcagatcc |
6151828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 6145611 - 6145409
Alignment:
| Q |
33 |
gtcaacttgtaaaccttgattagaagtttcacctctagttaatggatcaggtgatctacttctctttaaccgtgaactagcacgaaacaactcatcattt |
132 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||| |||||||||||||||||||||| |
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| T |
6145611 |
gtcaacttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaactcatcattc |
6145512 |
T |
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| Q |
133 |
ctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcag |
232 |
Q |
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| T |
6145511 |
ctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcctgcaacaactccacttcttggataatcag |
6145412 |
T |
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| Q |
233 |
atc |
235 |
Q |
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||| |
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| T |
6145411 |
atc |
6145409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 6126192 - 6125989
Alignment:
| Q |
33 |
gtcaacttgtaaaccttgattagaagtttcacctctagttaatggatcaggtgatctacttctctttaaccgtgaactagcacgaaacaactcatcattt |
132 |
Q |
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|||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||| |
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| T |
6126192 |
gtcaacttgtgaaccttgattagaagtttcacctctaatgaatggatcgggtgatctatttctctttaacaatgaattagcacgaaacaactcatcattc |
6126093 |
T |
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| Q |
133 |
ctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcag |
232 |
Q |
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||||||||| ||| | ||| ||||||| ||||| ||||||| ||||||||||||||||||||| | |||||| |||||| | ||||||||||| ||| || |
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| T |
6126092 |
ctagtaccaatagtaatggtgttaatttcatcgttgaatgacgaaatggaattcacattactattatttcctccaacaaatgcacttctttgataattag |
6125993 |
T |
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| Q |
233 |
atcc |
236 |
Q |
| |
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|||| |
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| T |
6125992 |
atcc |
6125989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 33802904 - 33803100
Alignment:
| Q |
34 |
tcaacttgtaaaccttgattagaagtttcacctctagttaatggatcaggtgatctacttctctttaaccgtgaactagcacgaaacaactcatcatttc |
133 |
Q |
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|||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| |||| || ||||||||||||| | |
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| T |
33802904 |
tcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggcgatctacttctcttgaatgatgaattagcctgacacaactcatcattcc |
33803003 |
T |
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| Q |
134 |
tagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatc |
230 |
Q |
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||| |||||||| ||||| ||||||| ||||| ||||||| |||| |||||| |||||||||| |||||| ||||| |||||||||||||| |||| |
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| T |
33803004 |
tagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatc |
33803100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 33731525 - 33731721
Alignment:
| Q |
34 |
tcaacttgtaaaccttgattagaagtttcacctctagttaatggatcaggtgatctacttctctttaaccgtgaactagcacgaaacaactcatcatttc |
133 |
Q |
| |
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|||| |||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||| |||| || ||||||||||||| | |
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| T |
33731525 |
tcaatttgtgaaccttgattagaagtttcccctctagtgaatggatcaggcgatctacttctcttgaatgatgaattagcctgacacaactcatcattcc |
33731624 |
T |
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| Q |
134 |
tagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatc |
230 |
Q |
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||| |||||||| ||||| ||||||| ||||| ||||||| |||| ||||| |||||||||| |||||| ||||| |||||||||||||| |||| |
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| T |
33731625 |
tagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacagaattagcattactactatttcctacaacatctccacttctttgataatc |
33731721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 6138548 - 6138490
Alignment:
| Q |
44 |
aaccttgattagaagtttcacctctagttaatggatcaggtgatctacttctctttaac |
102 |
Q |
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|||||||| |||||||||||||||| |||||| || |||||||| |||||||||||| |
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| T |
6138548 |
aaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaac |
6138490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 6138412 - 6138356
Alignment:
| Q |
168 |
gaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttg |
224 |
Q |
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|||||||||||||||||| |||||||||| ||||||||| | |||||||||||| |
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| T |
6138412 |
gaatgatgaaatggaattagcattactactatttcctgcaggaggtccacttctttg |
6138356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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