View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13245_low_40 (Length: 204)

Name: NF13245_low_40
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13245_low_40
NF13245_low_40
[»] chr8 (3 HSPs)
chr8 (18-147)||(32914626-32914755)
chr8 (174-204)||(16383411-16383441)
chr8 (174-204)||(34307250-34307280)
[»] chr7 (3 HSPs)
chr7 (157-204)||(27744345-27744392)
chr7 (174-204)||(22343395-22343425)
chr7 (174-204)||(32564462-32564492)
[»] scaffold0018 (1 HSPs)
scaffold0018 (174-204)||(152532-152562)
[»] chr6 (3 HSPs)
chr6 (174-204)||(15508060-15508090)
chr6 (174-204)||(15990078-15990108)
chr6 (174-204)||(30341396-30341426)
[»] chr5 (2 HSPs)
chr5 (174-204)||(2252204-2252234)
chr5 (174-204)||(3921301-3921331)
[»] chr4 (3 HSPs)
chr4 (174-204)||(17983779-17983809)
chr4 (174-204)||(50813928-50813958)
chr4 (174-203)||(29589777-29589806)
[»] chr2 (4 HSPs)
chr2 (174-204)||(2997523-2997553)
chr2 (174-204)||(17820040-17820070)
chr2 (174-204)||(43490155-43490185)
chr2 (176-204)||(13365389-13365417)
[»] chr1 (1 HSPs)
chr1 (174-204)||(50591036-50591066)
[»] chr3 (1 HSPs)
chr3 (175-204)||(36331365-36331394)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 32914626 - 32914755
Alignment:
Q  18 agaatttcataatagaaaggttcagaatatcaagtttaccttgtatgtcttctttgtttcagctgatgttagtgttgcctcgcatgactgcttctggcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32914626 agaatttcataatagaaaggttcagaatatcaagtttaccttgtatgtcttctttgtttcagctgatgttagtgttgcctcgcatgactgcttctggcta 32914725  T
Q  118 attataggtgtcgtggggttggaaggttcg 147  Q
    ||| ||||||||||||||||||||||||||    
T  32914726 attttaggtgtcgtggggttggaaggttcg 32914755  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 16383411 - 16383441
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  16383411 acaccccttgacacccacacaaaaatctgac 16383441  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 34307250 - 34307280
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  34307250 acaccccttgacacccacacaaaaatctgac 34307280  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 27744392 - 27744345
Alignment:
Q  157 agagttatgatacataaacaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||||    
T  27744392 agagttatgatacatagacaccctttgatacccacacaaaaatctgac 27744345  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 22343395 - 22343425
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  22343395 acaccccttgacacccacacaaaaatctgac 22343425  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 32564492 - 32564462
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  32564492 acaccccttgacacccacacaaaaatctgac 32564462  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 152532 - 152562
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  152532 acaccccttgacacccacacaaaaatctgac 152562  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 15508090 - 15508060
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  15508090 acaccccttgacacccacacaaaaatctgac 15508060  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 15990108 - 15990078
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  15990108 acaccccttgacacccacacaaaaatctgac 15990078  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 30341426 - 30341396
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  30341426 acaccccttgacacccacacaaaaatctgac 30341396  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 2252234 - 2252204
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  2252234 acaccccttgacacccacacaaaaatctgac 2252204  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 3921331 - 3921301
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  3921331 acaccccttgacacccacacaaaaatctgac 3921301  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 17983809 - 17983779
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  17983809 acaccccttgacacccacacaaaaatctgac 17983779  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 50813958 - 50813928
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  50813958 acaccccttgacacccacacaaaaatctgac 50813928  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 203
Target Start/End: Complemental strand, 29589806 - 29589777
Alignment:
Q  174 acaccccttgacacccacacaaaaatctga 203  Q
    ||||||||||||||||||||||||||||||    
T  29589806 acaccccttgacacccacacaaaaatctga 29589777  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 2997553 - 2997523
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  2997553 acaccccttgacacccacacaaaaatctgac 2997523  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 17820070 - 17820040
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  17820070 acaccccttgacacccacacaaaaatctgac 17820040  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 43490155 - 43490185
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  43490155 acaccccttgacacccacacaaaaatctgac 43490185  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 13365389 - 13365417
Alignment:
Q  176 accccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||    
T  13365389 accccttgacacccacacaaaaatctgac 13365417  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 50591066 - 50591036
Alignment:
Q  174 acaccccttgacacccacacaaaaatctgac 204  Q
    |||||||||||||||||||||||||||||||    
T  50591066 acaccccttgacacccacacaaaaatctgac 50591036  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 36331394 - 36331365
Alignment:
Q  175 caccccttgacacccacacaaaaatctgac 204  Q
    ||||||||||||||||||||||||||||||    
T  36331394 caccccttgacacccacacaaaaatctgac 36331365  T

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