View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_42 (Length: 202)
Name: NF13245_low_42
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 2373923 - 2373994
Alignment:
| Q |
13 |
gcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg |
84 |
Q |
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| T |
2373923 |
gcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg |
2373994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 2382148 - 2382077
Alignment:
| Q |
13 |
gcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg |
84 |
Q |
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| T |
2382148 |
gcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg |
2382077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 2839426 - 2839355
Alignment:
| Q |
13 |
gcaaaggcaaaggattaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg |
84 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839426 |
gcaaaggcaaaggagtaatgaatatttcaagaattagagaaggactagatttgcactattatgtttttcatg |
2839355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 2374052 - 2374096
Alignment:
| Q |
143 |
ttgagaagattgttatgttatctctctgttctgtgggttgttttt |
187 |
Q |
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| T |
2374052 |
ttgagaagattgttatgttatctctctgttctgtgggttgttttt |
2374096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 2382019 - 2381975
Alignment:
| Q |
143 |
ttgagaagattgttatgttatctctctgttctgtgggttgttttt |
187 |
Q |
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| T |
2382019 |
ttgagaagattgttatgttatctctctgttctgtgggttgttttt |
2381975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 2839303 - 2839259
Alignment:
| Q |
143 |
ttgagaagattgttatgttatctctctgttctgtgggttgttttt |
187 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2839303 |
ttgagaagattgttatgttatctctctgttccgtgggttgttttt |
2839259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 1525897 - 1525868
Alignment:
| Q |
30 |
atgaatatttcaagaattagagaaggacta |
59 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1525897 |
atgaatatttcaagaattagagaaggacta |
1525868 |
T |
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