View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13245_low_6 (Length: 662)

Name: NF13245_low_6
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13245_low_6
NF13245_low_6
[»] chr1 (2 HSPs)
chr1 (1-647)||(40628533-40629179)
chr1 (535-647)||(40635953-40636065)


Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Original strand, 40628533 - 40629179
Alignment:
Q  1 cagacaataacttgatacagcggggaactcaattggaataggagtgctatctggtacgggataaaaaataacaagatgaaaatcactaaaagaattaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40628533 cagacaataacttgatacagcggggaactcaattggaataggagtgctatctggtacgggataaaaaataacaagatgaaaatcactaaaagaattaaag 40628632  T
Q  101 tgtaagtgaagaagctcgaggtcagcagccttaatattgctccnnnnnnnngattcagtttacgtgctcttactggtcctcgtattgaaacaattccgaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40628633 agtaagtgaagaagctcgaggtcagcagccttaatattgctccttttttttgattcagtttacgtgctcttactggtcctcgtattgaaacaattccgaa 40628732  T
Q  201 agcttgagatattactacaattaagatgacccctgccaagccaacacttttactactaatatgactcagaagaaacaattcagcagtataagcaatagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40628733 agcttgagatattactacaattaagatgacccctgccaagccaacacttttactactaatatgactcagaagaaacaattcagcagtataagcaatagag 40628832  T
Q  301 aaagggatgagttctgatattatcaaaatctccattgacaagtcttgaacgggtgttgatctttttgttctttcattcatgtctcccactcccacaactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40628833 aaagggatgagttctgatattatcaaaatctccattgacaagtcttgaacgggtgttgatctttttgttctttcattcatgtctcccactcccacaactt 40628932  T
Q  401 cataagtcaaacttctgccaagtgcatctccaatttgaatactaacatgcttcatctgcttcttaaattcccatgaggaagtatcgtgataaaggacctt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40628933 cataagtcaaacttctgccaagtgcatctccaatttgaatactaacatgcttcatctgcttcttaaattcccatgaggaagtatcgtgataaaggacctt 40629032  T
Q  501 cctcataagactaagacgacgactactcatttggaaccatttttctcttcttgcaatgaaatttccagcaacttctgccatgtaatcacaaacttcgttc 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  40629033 cctcataagactaagacgacgactactcatttggaaccatttttctcttcttgcaatgaaatcttcagcaacttctgccatgtaatcacaaacttcgttc 40629132  T
Q  601 acctgttccaaccacacggtttctctttcatttgttgacttcaattt 647  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  40629133 acctgttccaaccacacaatttctctttcatttgttgacttcaattt 40629179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 535 - 647
Target Start/End: Complemental strand, 40636065 - 40635953
Alignment:
Q  535 aaccatttttctcttcttgcaatgaaatttccagcaacttctgccatgtaatcacaaacttcgttcacctgttccaaccacacggtttctctttcatttg 634  Q
    ||||||||||||||| ||| |||||||||||||||||||| | ||  ||||| ||| ||||||||||||| |||||||||||| |||||||||| |||||    
T  40636065 aaccatttttctcttgttgaaatgaaatttccagcaactttttccgagtaattacagacttcgttcacctcttccaaccacacagtttctctttgatttg 40635966  T
Q  635 ttgacttcaattt 647  Q
    |||||||||||||    
T  40635965 ttgacttcaattt 40635953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University