View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_8 (Length: 611)
Name: NF13245_low_8
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 66 - 595
Target Start/End: Original strand, 54985440 - 54985975
Alignment:
| Q |
66 |
accatgaccacatgcttaagggacacatttatcttctaaatgtgccacactatgttagttctagaattaattttttcctctccgaaattgtagccaaaca |
165 |
Q |
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| T |
54985440 |
accatgaccacatgcttaagggacacatttatcttctaaatgtgccacactatgttagttctagaattaattttttcctctccgaaattgtagccaaaca |
54985539 |
T |
|
| Q |
166 |
tagactatactaaaactagaatatgagacttttgcatcaagtaagattcttgcttttgaaatacggaaatattgatttagtactgaatg-agaatttaaa |
264 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54985540 |
tagactatattaaagctagaatatgagacttttgcatcaagtaagattcttgcttttgaaatacggaaatattgatttagtactgaatggagaatttaaa |
54985639 |
T |
|
| Q |
265 |
ctgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985640 |
ctgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaac |
54985739 |
T |
|
| Q |
365 |
ctgctttcagtgttcttgtatcaagattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcacttgc |
464 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985740 |
ctgctttcagtgttcttgtatcaaaattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcacttgc |
54985839 |
T |
|
| Q |
465 |
tgctgtcacagaacttaatttcaatatgattggtaagactacattcactt-----atttacatggttgattttcagatgctgattgtgttcttctatcat |
559 |
Q |
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| T |
54985840 |
tgctgtcacagaacttaatttcaatatgattggtaagactacattcacttatttaatttacatggttgattttcagatgctgattgtgttcttctatcat |
54985939 |
T |
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| Q |
560 |
agtagattgaggtgatattggatgctgaatctgtat |
595 |
Q |
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| T |
54985940 |
agtagattgagttgatataggatgctgaatctgtat |
54985975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 54985416 - 54985444
Alignment:
| Q |
19 |
cttacctcttttaaaaagtgctctaccat |
47 |
Q |
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| T |
54985416 |
cttacctcttttaaaaagtgctctaccat |
54985444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 269 - 499
Target Start/End: Original strand, 7883207 - 7883437
Alignment:
| Q |
269 |
aggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaacctgc |
368 |
Q |
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|||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||| || |
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| T |
7883207 |
aggtagctgtggcacacacaattgggcatgttgctgcaactgtgagtatgtccaaagtagcagtttcattcactcacatcatcaagagtggagaaccagc |
7883306 |
T |
|
| Q |
369 |
tttcagtgttcttgtatcaagattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcacttgctgct |
468 |
Q |
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||||||||| || |||||||||||||||||||| ||||| |||||| | | ||||||||| ||| | | ||||| ||||| ||||||||||| |||||| |
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| T |
7883307 |
tttcagtgtgctagtatcaagattcttgcttggagaagcattccctatgccagtttacctctcattgttgccaataattggtggttgtgcactagctgct |
7883406 |
T |
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| Q |
469 |
gtcacagaacttaatttcaatatgattggta |
499 |
Q |
| |
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|| |||||||| ||||||||||||||||||| |
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| T |
7883407 |
gtaacagaactcaatttcaatatgattggta |
7883437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 500
Target Start/End: Original strand, 18395987 - 18396224
Alignment:
| Q |
263 |
aactgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggaga |
362 |
Q |
| |
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|||| ||||||||||| ||||| |||||||| ||||| |||||||| || |||||||||||||| || || || |||||||| || ||||| ||||| || |
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| T |
18395987 |
aacttcaggttgctgttgcacacacaattggacatgtcgcggctacggttagtatgtccaaagtggctgtgtcgtttacacatatcatcaagagtggcga |
18396086 |
T |
|
| Q |
363 |
acctgctttcagtgttcttgtatcaagattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcactt |
462 |
Q |
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|||||||| |||||||| || || ||||| | | |||||| | ||||| | | ||| || || || || | ||||| ||||| || ||||||||| |
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| T |
18396087 |
gcctgcttttagtgttctggtttcgagatttatcttgggtgaaaccttccccgtgccagtctatctgtctttaattccaatcattggtggatgtgcactt |
18396186 |
T |
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| Q |
463 |
gctgctgtcacagaacttaatttcaatatgattggtaa |
500 |
Q |
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|||||||| || ||||| |||||||||||||||||||| |
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| T |
18396187 |
gctgctgtgactgaactcaatttcaatatgattggtaa |
18396224 |
T |
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