View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13245_low_9 (Length: 563)
Name: NF13245_low_9
Description: NF13245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13245_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 32560851 - 32560305
Alignment:
| Q |
1 |
ctgaaatgaattacctttatcatcatggctaccaacttttctaatcatagaggcaactctatcagcttcttgagtaaattcatcaaccaggactaagcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32560851 |
ctgaaatgaattacctttatcatcatggctaccaacttttctaatcatagaggcaactctatcagcttcttgagtaaattcatcaaccaggactaagcac |
32560752 |
T |
|
| Q |
101 |
tcaaaaacctttgcatagtccttaacaggccaatgatcatgccacaagaaagggtttttcccatcaatcttaatcacctcgatatcatcaaaagaaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32560751 |
tcaaaaacctttgcatagtccttaacaggccaatgatcatgccacaagaaagggtttttcccatcaatcttaatcacctcaatatcatcaaaagaaccat |
32560652 |
T |
|
| Q |
201 |
ttttatactgtctcaactgatccaaatccctttgaactgtccactttctaccacttcctttctgcaattcaaccacttgtgttctgttcaagagatcaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32560651 |
ttttatactgtctcaactgatccaaatccctttgaactgtccactttctaccacttcctttctgcaattcaaccacttgtgttctgttcaagagatcaga |
32560552 |
T |
|
| Q |
301 |
gtaacgaccctattgaacaaaaccactgcacagttcattaaatttatcaaattgaaacaccttatcaaatgaaatcggttgtaaaagatcgatttccttg |
400 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32560551 |
gtaacgacccaattgaacaaaaccactacacagttcattaaatttatcaaattgaaacaccttatcaaatgaaatcggttgtaaaagatcgatttccttg |
32560452 |
T |
|
| Q |
401 |
taaaacaaggaagcactaagactaggcatcaatagtgttctgttcaacattcttgcagtaagacaagcccttgcaaatgcaatcttttggttgtttaatc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32560451 |
taaaacaaggaagcactaagactaggcatcaatagtgttctgttcaacattcttgcagtaagacaagcccttgcaaatgcaatcttttggttgtttaatc |
32560352 |
T |
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| Q |
501 |
cccacacaatttgaggaacctccaaaaacttttgttgttgaacaaca |
547 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32560351 |
cccaaacaatttgaggaacctccaaaaacttttgttgttgaacaaca |
32560305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 531
Target Start/End: Complemental strand, 10751178 - 10750742
Alignment:
| Q |
95 |
aagcactcaaaaacctttgcatagtccttaacaggccaatgatcatgccacaagaaagggtttttcccatcaatcttaatcacctcgatatcatcaaaag |
194 |
Q |
| |
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|||||||||||||||||| |||||| || | |||||||||||||||||| ||||||||||||||||| ||| | ||| |||||| ||||||| ||| |
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| T |
10751178 |
aagcactcaaaaacctttccatagtttttcaaaggccaatgatcatgccataagaaagggtttttccctataatttcaattacctcgtaatcatcataag |
10751079 |
T |
|
| Q |
195 |
aaccatttttatactgtctcaactgatccaaatccctttgaactgtccactttctaccacttcctttctgcaattcaaccacttgtgttctgttcaagag |
294 |
Q |
| |
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| || || |||||| |||| || ||||| || | | ||||||||| || ||||| |||||| || ||||| |||| | ||||| ||||||| |
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| T |
10751078 |
agcctttactatactccttcaattgtgataaatctctctccaatgtccacttccttccactccctttcgtcatttcaagcactcgggttctattcaagac |
10750979 |
T |
|
| Q |
295 |
atcagagtaacgaccctattgaacaaaaccactgcacagttcattaaatttatcaaattgaaacaccttatcaaatgaaatcggttgtaaaagatcgatt |
394 |
Q |
| |
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|| || || || | |||||||||||||| || ||| ||||||| || |||||||| || || || ||||| |||||||||| || |||||||| |
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| T |
10750978 |
attgttataccggcctaactgaacaaaaccactacaaagtgcattaaacttttcaaattggaatactttctcaaacaaaatcggttgcaattgatcgatt |
10750879 |
T |
|
| Q |
395 |
tccttgtaaaacaaggaagcactaagactaggcatcaatagtgttctgttcaacattcttgcagtaagacaagcccttgcaaatgcaatcttttggttgt |
494 |
Q |
| |
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|| ||||| || | ||| ||||||| ||||||||||| || ||||| ||||||||||| ||||||||||||| |||||| || || || || || |||| |
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| T |
10750878 |
tctttgtagaatagggaggcactaaagctaggcatcaaaagggttctattcaacattctagcagtaagacaagaccttgcgaacgcgattttctgattgt |
10750779 |
T |
|
| Q |
495 |
ttaatccccacacaatttgaggaacctccaaaaactt |
531 |
Q |
| |
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|||||||||| |||| |||||||| |||||||||| |
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|
| T |
10750778 |
ttaatccccaaacaagctgaggaactaccaaaaactt |
10750742 |
T |
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