View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13246_low_1 (Length: 1012)
Name: NF13246_low_1
Description: NF13246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13246_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 878; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 878; E-Value: 0
Query Start/End: Original strand, 32 - 997
Target Start/End: Complemental strand, 55337457 - 55336496
Alignment:
| Q |
32 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337457 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
55337358 |
T |
|
| Q |
132 |
atctaagaacctatttgtttaatacctcccataactctt-gtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337357 |
atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
55337258 |
T |
|
| Q |
231 |
tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
330 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337257 |
tagtata-----tatataaacctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
55337163 |
T |
|
| Q |
331 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337162 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
55337063 |
T |
|
| Q |
431 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgnnnnnnntgtcatcaataggacacataatttacacc |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55337062 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgaaaaaaatgtcatcaataggacacataatttacacc |
55336963 |
T |
|
| Q |
531 |
atgatttatccaattctacaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctg |
630 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
55336962 |
atgatttatccaattcttcaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatcgg |
55336863 |
T |
|
| Q |
631 |
cgaacagcgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgct |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55336862 |
cgaacagcgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaacttgtattgcagccgcaactggtgct |
55336763 |
T |
|
| Q |
731 |
gatggtgcacaactgttggctctgaaactatcatccactcttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagc |
830 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55336762 |
gatggtgcacaactgttggctctgaaactatcatccactcttctgttttcagcagcaactggtatgttgcttatcatgaacaagattcagccttcgcagc |
55336663 |
T |
|
| Q |
831 |
tcgctgaggaacagcgcagtgctacaagattgttcaaacaactatggactcaaatccaaaccaaaatcaatcttggtaatcttattacggaggaagatgt |
930 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55336662 |
tcgctgaggaacagcgcaatgctacaagattgttcaaacaactatggactcaaatccaaaccaaaatcaatcttggtaatcttattactgaggaagatgt |
55336563 |
T |
|
| Q |
931 |
ggaatcttcattggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatg |
997 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55336562 |
ggaatcttcattggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatg |
55336496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 570 - 870
Target Start/End: Complemental strand, 55331485 - 55331185
Alignment:
| Q |
570 |
tgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctgcgaacagcgtcaaaattggaacaacctacttctaaacaa |
669 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||| ||||||||||| ||| || || ||||||| || |||||||||||||||||||||||||| |
|
|
| T |
55331485 |
tgcaactctatgcaattttagattctgtatccgacagaatcgaaatgcacaacaacctcagccaacagcgacagaattggaacaacctacttctaaacaa |
55331386 |
T |
|
| Q |
670 |
cattaacatgattacactcactgctacaacattaactggtattgcagccgcaactggtgctgatggtgcacaactgttggctctgaaactatcatccact |
769 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||| ||| ||| || |||| ||||||| ||| | | ||| |||||||| |||||||||||||| |
|
|
| T |
55331385 |
catcaacatgatcacacttactgctacaacattaaccggtgttgtggctgcaagtggtgctattggcaccccacttttggctcttaaactatcatccaca |
55331286 |
T |
|
| Q |
770 |
cttctgttttcagcagcaacttgtatgttgcttatcatgaacaagattcagccttcgcagctcgctgaggaacagcgcagtgctacaagattgttcaaac |
869 |
Q |
| |
|
||| | ||||| ||||| || |||| | ||||| |||||||| |||||||||||||| ||||| || ||||| | | ||||||||||| ||||||| |
|
|
| T |
55331285 |
cttttattttctgcagctacaagtatacttcttattatgaacaaaattcagccttcgcaactcgcggaagaacaaagaaacgctacaagattattcaaac |
55331186 |
T |
|
| Q |
870 |
a |
870 |
Q |
| |
|
| |
|
|
| T |
55331185 |
a |
55331185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 942 - 982
Target Start/End: Complemental strand, 55331116 - 55331076
Alignment:
| Q |
942 |
tggagaaagtgttggcacttgacaaagcttatccacttcct |
982 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55331116 |
tggagaaagttttggcacttgacaaagcttatccacttcct |
55331076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University