View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13246_low_2 (Length: 631)
Name: NF13246_low_2
Description: NF13246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13246_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Complemental strand, 54225029 - 54224418
Alignment:
| Q |
19 |
taactttgtttaatccgtgatataaccaatgtatatattctaaaatacaattttgttatttggggttgttgtagatatgagtagaccagtaaagtagtac |
118 |
Q |
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| T |
54225029 |
taactttgtttaatccgtgatataaccaatgtatatattctaaaatacaattttgttatttggggttgttgtagatatgagtagaccagtaaagtagtac |
54224930 |
T |
|
| Q |
119 |
tggtacagctgtgcatattattatgctactatgcatttgatttggatgcaacattatttcatggtagaaggtaaacatcatgagattctttgctatttag |
218 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54224929 |
tggtacagttgtgcatattattctgctactatgcatttgatttggatgcaacattatttcatggtagaaggtaaacatcatgagattctttgctatttag |
54224830 |
T |
|
| Q |
219 |
tatatgaaacagaaacaaaaaagtgtctttggcagaatgatgtattcttaggttttgagttgactgaagatgaacatggtaataggcaatatgaaattat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54224829 |
tatatgaaacagaaacaaaaaagtgtctttggcagaatgatgtattcttaggttttgagttgactgaagatgaacatggcaataggcaatatgaaattat |
54224730 |
T |
|
| Q |
319 |
ctttagtgttgttttggttacattgatgttcaaacatgtgtaaggtatgagttaaggtcacggtctaagctttcatacctcaactgttaagggtcatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54224729 |
ctttagtgttgttttggttacattgatgttcaaacatgtgaaaggtatgagttaaggtcacggtctaagctttcatacctcaactgttaagggtcatttt |
54224630 |
T |
|
| Q |
419 |
caatctgatggttttgcagggtcacgcccctattctttttctttatttggtgtctttttctatgctcc---------ctgtcttgtttcttatcttcact |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54224629 |
caatctgatggttttgcagggtcacgcccctattctttttctttatttggtgtctttttctatgctcctttgcctttctgtcttgtttcttatcttcact |
54224530 |
T |
|
| Q |
510 |
ggtcactgctttagtcggtattgtcttgtttccttttagtacccagacctcagtagctgtttttctttgactctttgcagcttcctaaattgtatttttc |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54224529 |
ggtcactgctttagtcggtattgtcttgtttccttttagtacccagacctcagtagctgtttttctttgactctttgcagcttcctaaattgtatttttc |
54224430 |
T |
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| Q |
610 |
gttgcacctatg |
621 |
Q |
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|||||||||||| |
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| T |
54224429 |
gttgcacctatg |
54224418 |
T |
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