View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13246_low_3 (Length: 424)
Name: NF13246_low_3
Description: NF13246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13246_low_3 |
 | |
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| [»] scaffold0003 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 24495065 - 24495421
Alignment:
| Q |
20 |
gtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtaccc |
119 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495065 |
gtttccactatagatcatctatcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtaccc |
24495164 |
T |
|
| Q |
120 |
ctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24495165 |
ctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaa |
24495264 |
T |
|
| Q |
220 |
gaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24495265 |
gaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatat |
24495364 |
T |
|
| Q |
320 |
accttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24495365 |
accttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24495421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 136 - 376
Target Start/End: Original strand, 24491623 - 24491863
Alignment:
| Q |
136 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacact |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24491623 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacact |
24491722 |
T |
|
| Q |
236 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491723 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
24491822 |
T |
|
| Q |
336 |
agcaaaaaatcattattccttacatatcattattccttata |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491823 |
agcaaaaaatcattattccttacatatcattattccttata |
24491863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 2810226 - 2810371
Alignment:
| Q |
183 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
282 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2810226 |
tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt |
2810325 |
T |
|
| Q |
283 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtga |
328 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2810326 |
aggacaacaaatatgtttctatatattgtaccaatataccttgtga |
2810371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 2810031 - 2810071
Alignment:
| Q |
135 |
gtgttaaggttacaggaccaaggcttttaaattaagagata |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2810031 |
gtgttaaggttacaagaccaaggcttttaaattaagagata |
2810071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 18556927 - 18556573
Alignment:
| Q |
20 |
gtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtaccc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
18556927 |
gtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatatgacggtaccc |
18556828 |
T |
|
| Q |
120 |
ctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
18556827 |
ctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagata-ttctagtattaagcatttaagatgagagttattctgtgatcaa |
18556729 |
T |
|
| Q |
220 |
gaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatat |
319 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18556728 |
gaaataatatcacactataattgactagagaaagtcaaaccatagctggaggaagcaattattaggacagcaaatatgtttctatatattgtaccaatat |
18556629 |
T |
|
| Q |
320 |
accttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
376 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18556628 |
accttgtgaatgatatagc-aaaaatcattattccatacatatcattattccttata |
18556573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 136 - 376
Target Start/End: Original strand, 24358936 - 24359176
Alignment:
| Q |
136 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacact |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24358936 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacact |
24359035 |
T |
|
| Q |
236 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24359036 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
24359135 |
T |
|
| Q |
336 |
agcaaaaaatcattattccttacatatcattattccttata |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359136 |
agcaaaaaatcattattccttacatatcattattccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 151 - 377
Target Start/End: Original strand, 86693 - 86922
Alignment:
| Q |
151 |
accaaggcttttaaattaagagatactag----tattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta |
246 |
Q |
| |
|
|||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
86693 |
accaaggcttttaaattaagtgatattatattctagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta |
86792 |
T |
|
| Q |
247 |
gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
86793 |
gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatc |
86891 |
T |
|
| Q |
347 |
attattccttacatatcattattccttatac |
377 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
86892 |
attattccttatatatcattattccttatac |
86922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 86530 - 86677
Alignment:
| Q |
20 |
gtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtaccc |
119 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
86530 |
gtttccactacagatcagctaacagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggtaccc |
86629 |
T |
|
| Q |
120 |
ctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaatt |
167 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86630 |
ctatcttgcaggggcgtgttaaggttacaggaccaaggcttttaaatt |
86677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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