View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13246_low_4 (Length: 422)

Name: NF13246_low_4
Description: NF13246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13246_low_4
NF13246_low_4
[»] scaffold0288 (2 HSPs)
scaffold0288 (44-190)||(5856-6002)
scaffold0288 (359-416)||(5626-5683)
[»] chr5 (2 HSPs)
chr5 (45-204)||(26469664-26469823)
chr5 (45-151)||(26498488-26498593)
[»] chr3 (5 HSPs)
chr3 (45-204)||(8833815-8833975)
chr3 (47-204)||(55307727-55307884)
chr3 (47-151)||(55312585-55312688)
chr3 (45-151)||(8838648-8838754)
chr3 (44-139)||(7745280-7745376)
[»] chr2 (1 HSPs)
chr2 (45-204)||(13128352-13128512)
[»] chr7 (1 HSPs)
chr7 (44-151)||(28238705-28238812)
[»] scaffold0172 (1 HSPs)
scaffold0172 (45-151)||(35273-35379)


Alignment Details
Target: scaffold0288 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 6002 - 5856
Alignment:
Q  44 atgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacactt 143  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6002 atgtagtacagttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacactt 5903  T
Q  144 tcttaatatggtatcagttttctttttctctcctttttatgagagag 190  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||    
T  5902 tcttaatatggtatcagttttctttctctctccttttcatgagagag 5856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 5683 - 5626
Alignment:
Q  359 gaattgaattttctgcaatttcttattgcatactctgtttttcacttcatattcttcg 416  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  5683 gaattgaattttctgcaatttctcattgcatactctgtttttcacttcatcttcttcg 5626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 26469664 - 26469823
Alignment:
Q  45 tgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacacttt 144  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||    
T  26469664 tgtagtacaattcatattagcaagtacaattctcaattgtatatatacattgatgtaac-acatttccaattaatgaatcaattcactttttcacacttt 26469762  T
Q  145 cttaatatggtatc-agttttctttttctctcctttttatgagagagttagttacgatccg 204  Q
    |||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||    
T  26469763 cttaatatggtatcaatttttctttctctctccttttcatgagagagttagttacgatccg 26469823  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 26498488 - 26498593
Alignment:
Q  45 tgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacacttt 144  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||    
T  26498488 tgtagtacaattcatattagcaagtacaattctcaattgtatatatacattgatgtaac-acatttccaattaatgaatcaattcactttttcacacttt 26498586  T
Q  145 cttaata 151  Q
    |||||||    
T  26498587 cttaata 26498593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 8833815 - 8833975
Alignment:
Q  45 tgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacacttt 144  Q
    ||||||||| |||| |||| |||||||||||||||| |||||| |||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||    
T  8833815 tgtagtacaattcacattaacaagtacaattctcaattgtatatataccttgctgtaacaccttttcaatctaatgaatcaattcactttttcacacttt 8833914  T
Q  145 cttaatatggtatcag-ttttctttttctctcctttttatgagagagttagttacgatccg 204  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  8833915 cttaatatggtatcagtttttctttctctctccttttcatgagagagttagttacgatccg 8833975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 55307727 - 55307884
Alignment:
Q  47 tagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacactttct 146  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |  |||||||||||||||||||||||||||||||    
T  55307727 tagtacaattcatattagcaagtacaattctcaattgtatatatacattgatgtaaca-catttccaattaatgaatcaattcactttttcacactttct 55307825  T
Q  147 taatatggtatcag-ttttctttttctctcctttttatgagagagttagttacgatccg 204  Q
    |||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||    
T  55307826 taatatggtatcagtttttctttctctctctttttcatgagagagttagttacgatccg 55307884  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 55312585 - 55312688
Alignment:
Q  47 tagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacactttct 146  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  55312585 tagtacaattcatattagcaagtacaattctcaattgtatatatacattgatgtaac-acatttccaattaatgaatcaattcactttttcacactttct 55312683  T
Q  147 taata 151  Q
    |||||    
T  55312684 taata 55312688  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 8838648 - 8838754
Alignment:
Q  45 tgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacacttt 144  Q
    ||||||||| |||| |||| |||||||||||||||| |||||| |||| ||| ||||||| | ||||||||||||||||||||| |||||||||||||||    
T  8838648 tgtagtacaattcacattaacaagtacaattctcaattgtatatataccttgctgtaacaccttttcaatctaatgaatcaattaactttttcacacttt 8838747  T
Q  145 cttaata 151  Q
    |||||||    
T  8838748 cttaata 8838754  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 7745280 - 7745376
Alignment:
Q  44 atgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattc-actttttcac 139  Q
    |||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||  ||||||| |||||||||| |||| ||||||||||    
T  7745280 atgtagtacacttcatattagctagtacatttcacaaatgtataaatacattgatgtaacacaatttcaaactaatgaatcgattctactttttcac 7745376  T

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Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 13128352 - 13128512
Alignment:
Q  45 tgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacacttt 144  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||| |||||||   ||||||  |||||||||  |||||| ||||| | |||    
T  13128352 tgtagtacaattcatattagcaagtacaattctctattgtataaatacattgctgtaacacattttcaagttaatgaatcttttcactctttcaaagttt 13128451  T
Q  145 cttaatatggtatcag-ttttctttttctctcctttttatgagagagttagttacgatccg 204  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  13128452 cttaatatggtatcagtttttctttctctctccttttcatgagagagttagttacgatccg 13128512  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 28238812 - 28238705
Alignment:
Q  44 atgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacactt 143  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |||||| ||||||| ||    
T  28238812 atgtagtacaatccatattagcaagtaaaattctcaaatgtataaatacattgctgtaacaacttttcaatctagtgaatcatttcactctttcacattt 28238713  T
Q  144 tcttaata 151  Q
    ||||||||    
T  28238712 tcttaata 28238705  T

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Target: scaffold0172 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 35379 - 35273
Alignment:
Q  45 tgtagtacatttcatattagcaagtacaattctcaaatgtataaatacattgatgtaacaacatttcaatctaatgaatcaattcactttttcacacttt 144  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||| |||||||   ||||||   ||||||||  |||||| ||||| | |||    
T  35379 tgtagtacaattcatattagcaagtacaattctctattgtataaatacattgctgtaacacattttcaagtgaatgaatcttttcactctttcaaagttt 35280  T
Q  145 cttaata 151  Q
    |||||||    
T  35279 cttaata 35273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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