View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13246_low_6 (Length: 394)
Name: NF13246_low_6
Description: NF13246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13246_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 4152926 - 4152562
Alignment:
| Q |
12 |
atatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatggaaatgagaccagtttggaagagc |
111 |
Q |
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| T |
4152926 |
atatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatggaaatgagaccagtttggaagagc |
4152827 |
T |
|
| Q |
112 |
cttacaagatcgttcactataaaatcagcacaaaaaggacatagactttcatagtagattgacatggttactttcttgtcataattagaggaagatgaag |
211 |
Q |
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| T |
4152826 |
cttacaagatcgttcactataaaatcagcacaaaaaggacatagactttcatagtagattgacatggttactttcttgtcataattagaggaagatgaag |
4152727 |
T |
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| Q |
212 |
aagaagaaggtgctactaagagcaatagcaaaagcaaaagtggaagaaggaggaaacaaaagaagaatgatcgtggaggtaaagaacctagaaaagaagg |
311 |
Q |
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| T |
4152726 |
aagaagaaggtgctactaagagcaatagcaaaagcaaaagtggaagaaggaggaaacaaaagaagaatgatcgtggaggtaaagaacctagaaaagaagg |
4152627 |
T |
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| Q |
312 |
cattttcatttttgtgatatagaaaatggaagaagaaaaaagaatgagtttatttgggatatggt |
376 |
Q |
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| T |
4152626 |
cattttcatttttgtgatatagaaaatggaagaagaaaaaagaatgagtttatttgggatatggt |
4152562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 4160125 - 4159788
Alignment:
| Q |
13 |
tatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatggaaatgagaccagtttggaagagcc |
112 |
Q |
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| T |
4160125 |
tatacctgacaaacaaaagtgccattagttgcaatcctagcatttccccaagggaccattttaagattcacaattgaaatgagattggtttgaaagagct |
4160026 |
T |
|
| Q |
113 |
ttacaagatcgttcactataaaatcagcacaaaaaggacatagactttcatagtagattgacatggttactttcttgtcataattagaggaagatgaaga |
212 |
Q |
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| T |
4160025 |
tcacaagatggttcactatgaaatcagcagaataagggcatagactttcatagtagattgacatggttactttcttctcatttttagaggaagttgatga |
4159926 |
T |
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| Q |
213 |
agaagaaggtgctactaagagcaatagcaaaagcaaaagtggaagaaggaggaaacaaaagaagaatgatcgtggaggtaaagaacctagaaaagaaggc |
312 |
Q |
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|||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||| |||||| | | |||||||| || ||||||| |
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| T |
4159925 |
agaagaaggtgctactaatagcaatagc------aaaattggaagaaggatgaaacaaaagaagaatgagcgtggatgaatagaacctaaaagagaaggc |
4159832 |
T |
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| Q |
313 |
attttcatttttgtgatatagaaaatggaagaagaaaaaagaatgag |
359 |
Q |
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| T |
4159831 |
attttcatttttgtgctat-ggaaatggaaga--aaaaaagaatgag |
4159788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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