View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13246_low_8 (Length: 265)

Name: NF13246_low_8
Description: NF13246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13246_low_8
NF13246_low_8
[»] chr4 (4 HSPs)
chr4 (24-259)||(23596537-23596772)
chr4 (24-259)||(23587685-23587920)
chr4 (24-253)||(54396404-54396633)
chr4 (190-239)||(35132595-35132644)
[»] chr7 (6 HSPs)
chr7 (24-259)||(8102648-8102883)
chr7 (24-227)||(8017397-8017600)
chr7 (28-233)||(39985631-39985836)
chr7 (25-236)||(8382851-8383062)
chr7 (202-236)||(8602133-8602167)
chr7 (25-134)||(7877810-7877919)
[»] chr2 (7 HSPs)
chr2 (25-233)||(17716665-17716873)
chr2 (25-233)||(17717926-17718137)
chr2 (26-146)||(17622010-17622130)
chr2 (26-146)||(17648106-17648226)
chr2 (26-146)||(17705803-17705923)
chr2 (25-200)||(17666694-17666869)
chr2 (26-146)||(17704120-17704240)
[»] chr1 (1 HSPs)
chr1 (34-98)||(34466906-34466970)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 23596772 - 23596537
Alignment:
Q  24 tctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596772 tctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatc 23596673  T
Q  124 ctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596672 ctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttc 23596573  T
Q  224 caccaccaagatcgaaaataagaacgttcttctcac 259  Q
    ||||||||||||||||||||||||||||||||||||    
T  23596572 caccaccaagatcgaaaataagaacgttcttctcac 23596537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 23587920 - 23587685
Alignment:
Q  24 tctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatc 123  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23587920 tctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatc 23587821  T
Q  124 ctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  23587820 ctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttc 23587721  T
Q  224 caccaccaagatcgaaaataagaacgttcttctcac 259  Q
    ||||||||||||||||||||||||||||||||||||    
T  23587720 caccaccaagatcgaaaataagaacgttcttctcac 23587685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 54396404 - 54396633
Alignment:
Q  24 tctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatc 123  Q
    |||||||||||| ||||| || || || | ||| |||| ||| ||||||||||| |||||||| |||||| | || ||   ||||||||| ||||||||     
T  54396404 tctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccatt 54396503  T
Q  124 ctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttc 223  Q
    |||||||||||||||||||| || | ||| ||||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |||||||| |||||||    
T  54396504 ctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttc 54396603  T
Q  224 caccaccaagatcgaaaataagaacgttct 253  Q
    |||| || |  || |||||||| |||||||    
T  54396604 cacctcccaagtcaaaaataagcacgttct 54396633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 35132595 - 35132644
Alignment:
Q  190 tcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaa 239  Q
    |||| ||||||||| | ||||||||||||||| |||||||||||||||||    
T  35132595 tccttaatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaa 35132644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 8102648 - 8102883
Alignment:
Q  24 tctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatc 123  Q
    ||||||||| || |||||||| || ||||| ||||| || ||||| |||||||| ||||| ||||||||||| || ||||||||||||||| | |||||     
T  8102648 tctctcacatgcggttctcaatctcctaagtgccctagggtttccgctaatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccatt 8102747  T
Q  124 ctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttc 223  Q
    |||||||||||||||||||| || | ||| |||||||| || ||||| || || ||||| ||||| || ||||||||||||||||| ||||||||||| |    
T  8102748 ctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtac 8102847  T
Q  224 caccaccaagatcgaaaataagaacgttcttctcac 259  Q
    ||||||| | ||| || || |  |||||||||||||    
T  8102848 caccacccaaatcaaagatcaacacgttcttctcac 8102883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 8017600 - 8017397
Alignment:
Q  24 tctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatc 123  Q
    |||||||||||| || |||||||| ||||| || || || |||||||||||||| ||||| ||||||||||| || || ||||||||||| || |||||     
T  8017600 tctctcacaagctgtcctcaacctcctaagtgctctagggtttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccatt 8017501  T
Q  124 ctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttc 223  Q
    ||||| |||||||||||||| || | ||| ||||||||||| ||||| || || ||||| ||||| || |||||||||||||| || ||||||||||| |    
T  8017500 ctgttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtac 8017401  T
Q  224 cacc 227  Q
    ||||    
T  8017400 cacc 8017397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 39985631 - 39985836
Alignment:
Q  28 tcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgt 127  Q
    ||||||||||| |||||||| |||||||| || || || ||||| || || ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||    
T  39985631 tcacaagcagtcctcaacctcctaagagctctggggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgt 39985730  T
Q  128 tatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccacc 227  Q
    | |||||||| |||||||| | ||| || || || ||||| |||||||||||||||||||| || |||||||| || |  || ||||||||||| |||||    
T  39985731 tgtcaaaatcctcacctccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccacc 39985830  T
Q  228 accaag 233  Q
    ||||||    
T  39985831 accaag 39985836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 8383062 - 8382851
Alignment:
Q  25 ctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcc 124  Q
    ||||| ||||| ||||| ||||||||||||||| |||| || |||||||| || || |||| |||||||||||| || | |||||| |  ||||| || |    
T  8383062 ctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtccttattatgcttcctcttgaactcgtcaacaaagtacttcacgattc 8382963  T
Q  125 tgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttcc 224  Q
    ||||||| || ||||||||||| | ||| || || || || || || |||||  |||||| |   | || ||| || || || || ||||||||||||||    
T  8382962 tgttatctaagtcttcacctcctagatgagtgtctccggcagtggccttcacaacaaagacattattcttaattgtgaggagagacacatcaaaagttcc 8382863  T
Q  225 accaccaagatc 236  Q
    ||||||||||||    
T  8382862 accaccaagatc 8382851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 8602133 - 8602167
Alignment:
Q  202 agaagtgaaacatcaaaagttccaccaccaagatc 236  Q
    ||||| |||||||||||||||||||||||||||||    
T  8602133 agaagagaaacatcaaaagttccaccaccaagatc 8602167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 7877919 - 7877810
Alignment:
Q  25 ctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcc 124  Q
    |||||||| |||||||||||||| ||||| ||||| || ||||||| ||| ||    |||||||||||||| || ||    || |||||||||| ||| |    
T  7877919 ctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattc 7877820  T
Q  125 tgttatcaaa 134  Q
    ||||||||||    
T  7877819 tgttatcaaa 7877810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 17716873 - 17716665
Alignment:
Q  25 ctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcc 124  Q
    |||||||||||||| ||||||||  ||||||| ||||| || |||||||| || ||||| ||||| |||||||| ||| ||||||| ||||||||||| |    
T  17716873 ctctcacaagcagtcctcaacctcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattc 17716774  T
Q  125 tgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttcc 224  Q
    |||||| |||||| |||||||| | ||| |  || || ||||||||||| |||| |||| |||  || |||||||| || |  || ||||||||||| ||    
T  17716773 tgttattaaaatcctcacctccaagatgggcgtctccggctgtagctttaacctgaaagttacactcttcaatagttagcaaagagacatcaaaagtacc 17716674  T
Q  225 accaccaag 233  Q
    |||||||||    
T  17716673 accaccaag 17716665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 17718137 - 17717926
Alignment:
Q  25 ctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcc 124  Q
    |||||||||||||| |||||| |  ||||||| ||||| || |||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| |    
T  17718137 ctctcacaagcagtcctcaacttcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattc 17718038  T
Q  125 tgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagta---agaagtgaaacatcaaaagt 221  Q
    |||||| |||||| |||||||| | ||| |  || || ||||||||||| |||| |||| |||  || |||||||||   || |  || |||||||||||    
T  17718037 tgttattaaaatcctcacctccaagatgggcgtctccggctgtagctttaacctgaaagttacactcttcaatagtagttagcaaagagacatcaaaagt 17717938  T
Q  222 tccaccaccaag 233  Q
     |||||||||||    
T  17717937 accaccaccaag 17717926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 17622130 - 17622010
Alignment:
Q  26 tctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcct 125  Q
    ||||||||||||| ||||||||  ||||||| ||||| || ||||| || || ||||| ||||| |||||||| ||||||||||| ||||||||||| ||    
T  17622130 tctcacaagcagtcctcaacctcataagagctcttgggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattct 17622031  T
Q  126 gttatcaaaatcttcacctcc 146  Q
    ||||| |||||| ||||||||    
T  17622030 gttattaaaatcctcacctcc 17622010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 17648226 - 17648106
Alignment:
Q  26 tctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcct 125  Q
    ||||||||||||| ||||||||  ||||||| ||||| || |||||||| || ||||| ||||| ||||||||  |||||||||| || |||||||| ||    
T  17648226 tctcacaagcagtcctcaacctcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaacacttgaacaaagtgattcaccattct 17648127  T
Q  126 gttatcaaaatcttcacctcc 146  Q
    ||||| |||||| ||||||||    
T  17648126 gttattaaaatcctcacctcc 17648106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 17705923 - 17705803
Alignment:
Q  26 tctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcct 125  Q
    ||||||||||||| ||| |||   ||||||| | ||| || |||||||| || ||||| ||||| |||||||| |||| |||||| ||||||||||| ||    
T  17705923 tctcacaagcagtcctcgaccacataagagctcatgggttgccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattct 17705824  T
Q  126 gttatcaaaatcttcacctcc 146  Q
    ||||| |||||| ||||||||    
T  17705823 gttattaaaatcctcacctcc 17705803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 17666869 - 17666694
Alignment:
Q  25 ctctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcc 124  Q
    |||||||||||||| | ||||||  ||||||| ||||| || ||||| || || || || ||||| || ||||| ||||||||||| || |||||||| |    
T  17666869 ctctcacaagcagtccccaacctcataagagctcttgggttgccactgatgtccttgttgttctttcttttgaactcttgaacaaagtgattcaccattc 17666770  T
Q  125 tgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagt 200  Q
    |||||| |||||| |||||||| | ||| |  || || | ||||||||| ||| ||| |||||| || ||||||||    
T  17666769 tgttattaaaatcctcacctccaagatgggggtctccggttgtagctttaaccccaatgataccctcttcaatagt 17666694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 17704240 - 17704120
Alignment:
Q  26 tctcacaagcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcct 125  Q
    ||||||||||||| ||||||||  ||||||| ||| | |  ||||| || || ||| | ||||| |||||||| ||||||||||| | ||||||||| ||    
T  17704240 tctcacaagcagtcctcaacctcataagagctctttggtcgccactgatgtccttcctgttctttctcttgaactcttgaacaaagtagttcaccattct 17704141  T
Q  126 gttatcaaaatcttcacctcc 146  Q
    ||||| |||||| ||||||||    
T  17704140 gttattaaaatcctcacctcc 17704120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 34466970 - 34466906
Alignment:
Q  34 gcagttctcaaccttctaagagcccttggatttccactaatatctttcttattcttcctcttgaa 98  Q
    |||||||||||||| || | ||| || || |||||||||||||| || |||| ||||||||||||    
T  34466970 gcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaa 34466906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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