View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13247_low_1 (Length: 249)
Name: NF13247_low_1
Description: NF13247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13247_low_1 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 6069593 - 6069358
Alignment:
| Q |
14 |
agatgatgggaaaaaccaaacacatttcattcagtaacagcttgaatttggatggacattcacttagccttataatgaaaagtctcaatttaacaatgat |
113 |
Q |
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| T |
6069593 |
agatgatgggaaaaaccaaacacatttcattcagtaacagcttgaatttggatggacattcacttacccttataatgaaaagtctcaatttaacaatgat |
6069494 |
T |
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| Q |
114 |
gagtgctgtgtttcaaaatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatc |
213 |
Q |
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| T |
6069493 |
gagtgctgtgtttcaaaatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatc |
6069394 |
T |
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| Q |
214 |
ccgagtctgttgcaatgtcaaatagctactgactcc |
249 |
Q |
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| T |
6069393 |
ccgagtctgttgcaatgtcaaatagctactgactcc |
6069358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 6193979 - 6193745
Alignment:
| Q |
14 |
agatgatgggaaaaaccaaacacatttcattcagtaacagcttgaatttggatggacattcacttagccttataatgaaaagtctcaatttaacaatgat |
113 |
Q |
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||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||| |
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| T |
6193979 |
agatgatcggaaaaaccaaacatatttcattcagcaacagcttgaatttggacggacattcacttggacttataatggaaagtctcaatttaacaatgat |
6193880 |
T |
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| Q |
114 |
gagtgctgtgtttcaaaatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatc |
213 |
Q |
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| T |
6193879 |
gagtgctgtgtttcataatgtgtctgtaagaagactccgtgtggccgtccgcagctacaactataacagtgttgatgcttgtcaactaggaacaagtatc |
6193780 |
T |
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| Q |
214 |
ccgagtctgttgcaatgtcaaatagctactgactc |
248 |
Q |
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| T |
6193779 |
ccgaggctattccaatgtctaacagcttctgactc |
6193745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 37452996 - 37453230
Alignment:
| Q |
15 |
gatgatgggaaaaaccaaacacatttcattcagtaacagcttgaatttggatggacattcacttagccttataatgaaaagtctcaatttaacaatgatg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |
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| T |
37452996 |
gatgatgggaaaaaccaaacacatttcattcagtaacagcttgaatttggatggacattcactcagccttataatggaaaatctcaatttaacaatgatg |
37453095 |
T |
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| Q |
115 |
agtgctgtgtttcaaaatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||| ||||| |||||||||| |||||| |
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| T |
37453096 |
agtgctgtgtttcaaaatgtgtctgtaagaagactccgtgtgaaagttcacagctacaactataacagtgttgatgcttgtcgaccaggaacaagtatcc |
37453195 |
T |
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| Q |
215 |
cgagtctgttgcaatgtcaaatagctactgactcc |
249 |
Q |
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|||| ||||| ||||||||| |||| |||||||| |
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| T |
37453196 |
cgaggctgttcaaatgtcaaacagctgctgactcc |
37453230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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