View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13248_high_1 (Length: 706)
Name: NF13248_high_1
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13248_high_1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 661; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 14 - 706
Target Start/End: Complemental strand, 414636 - 413944
Alignment:
| Q |
14 |
atcatcaaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
113 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414636 |
atcataaaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
414537 |
T |
|
| Q |
114 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatcagttgcttcttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414536 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatcagttgcttcttt |
414437 |
T |
|
| Q |
214 |
caattcaagaaatattactttaaccttctctgtcagttcctccttccttgcttcccatttgttcaaatctctttcagcagcttcagtcaccaacctaacg |
313 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
414436 |
caattcatgaaatatttctttaaccttctctgtcagttcctccttccttgcttcccatttgttcaaatctctttcagcagcttcagtcaccatcctaacg |
414337 |
T |
|
| Q |
314 |
ctgtctgtatcctgtatcagcttgcaagtctgcttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagccattcaacatccacgttct |
413 |
Q |
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| T |
414336 |
ctgtctgtttcctgtatcagcttgcaagtctgcttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagccattcaacatccacgttct |
414237 |
T |
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| Q |
414 |
ggttttttatataactcacgacgtcaatcttcttttccaggtttttgcttgagatgttagcaatactagcattctttttgtccaactctgctatgatttc |
513 |
Q |
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| T |
414236 |
ggttttttatataactcacgacgtcaatcttcttttccaggtttttgcttgagatgttagcaatactagcattctttttgtccaactctgctatgatttc |
414137 |
T |
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| Q |
514 |
acagattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggc |
613 |
Q |
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| T |
414136 |
acaaattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggc |
414037 |
T |
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| Q |
614 |
atatgttccgactttatttgatattctttaatattgtccttaggccgggtttgtatttcggaatcaagctcatcatcatcttcctcttccgcc |
706 |
Q |
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| T |
414036 |
atatgttccgactttatttgatattctttaatattgtccttaggccggctttgtatttcggaatcaagctcatcatcatcttcctcttccgcc |
413944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 606
Target Start/End: Original strand, 7527762 - 7527817
Alignment:
| Q |
551 |
aactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaa |
606 |
Q |
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| T |
7527762 |
aactttgaagtgcaattcttcgcaatatctccatgcttgccgataacttttcttaa |
7527817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 7527576 - 7527612
Alignment:
| Q |
360 |
ttgcctcaagtatctcagttagcctgctgtgaagcca |
396 |
Q |
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| T |
7527576 |
ttgcctcaagtatgtcagttagcctactgtgaagcca |
7527612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 37211616 - 37211772
Alignment:
| Q |
46 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatc |
145 |
Q |
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| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
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| Q |
146 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
202 |
Q |
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||||||||||||| ||| |||| |||||| ||||| |||||||| || |||||| |
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| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatca |
37211772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 37217299 - 37217454
Alignment:
| Q |
47 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatct |
146 |
Q |
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| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
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| Q |
147 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
202 |
Q |
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| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatca |
37217454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 346 - 690
Target Start/End: Original strand, 37211916 - 37212254
Alignment:
| Q |
346 |
cttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagccattcaacatccacgttctggttttttatataactcacgacgtcaatcttc |
445 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||| | |||||||| | | | ||| | | ||||| |
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| T |
37211916 |
cttaagaatctgccttgcctcaagtatctcagttagcctggtgtgaagccactcaacttccactttcagattttttatgtcattaacgtcaccgatctta |
37212015 |
T |
|
| Q |
446 |
ttttccaggtttttgcttgagatgttagcaatactagcattctttttgtccaactctgctatgatttcacagattgcctccaagaacaatgaacggaact |
545 |
Q |
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||| ||||| || | | |||||||||||| || |||||||||||| |||| ||| ||||||||||| | |||||||| |||||| || | |
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| T |
37212016 |
attttcaggtcatttcctttgatgttagcaat------atcctttttgtccaaatctgatattatttcacagatcgtatccaagaaagctgaacgaaatt |
37212109 |
T |
|
| Q |
546 |
tcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggcatatgttccgactttatttgatattctttaat |
645 |
Q |
| |
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|||| |||||||| || ||||| |||||||||||| |||||||| ||||||||||||| || |||| ||| | ||| | ||||||| |||| |
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| T |
37212110 |
tcaccgactttgtcacacaattcttggtaatatctccatgtttgccgataatttttcttaatatcgacataaattctggcttcacttgatatatattaac |
37212209 |
T |
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| Q |
646 |
attgtccttaggccgggtttgtatttcggaatcaagctcatcatc |
690 |
Q |
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| T |
37212210 |
catgtcctcaggctggctttgcatttcagaatcaacctcatcatc |
37212254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 616
Target Start/End: Original strand, 37183604 - 37183737
Alignment:
| Q |
483 |
cattctttttgtccaactctgctatgatttcacagattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctcc |
582 |
Q |
| |
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||||||||| |||||| |||| ||| ||| ||||||| |||||| |||| |||||||| || ||| |||||| | ||| ||||| |||||||||| |
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| T |
37183604 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
37183703 |
T |
|
| Q |
583 |
atgcttgccgatgatttttcttaataccggcata |
616 |
Q |
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| T |
37183704 |
atgcttaccgataatttttcttaacatcggcata |
37183737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 616
Target Start/End: Original strand, 37194736 - 37194869
Alignment:
| Q |
483 |
cattctttttgtccaactctgctatgatttcacagattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctcc |
582 |
Q |
| |
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||||||||| |||||| |||| ||| ||| ||||||| |||||| |||| |||||||| || ||| |||||| | ||| ||||| |||||||||| |
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| T |
37194736 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
37194835 |
T |
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| Q |
583 |
atgcttgccgatgatttttcttaataccggcata |
616 |
Q |
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|||||| ||||| ||||||||||| | ||||||| |
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| T |
37194836 |
atgcttaccgataatttttcttaacatcggcata |
37194869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 37217573 - 37217627
Alignment:
| Q |
342 |
tctgcttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagcca |
396 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||||||||| | |||||||| |
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|
| T |
37217573 |
tctgcttaagaatctgccttgcctcaagtattccagttagcctggtttgaagcca |
37217627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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