View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13248_high_9 (Length: 281)

Name: NF13248_high_9
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13248_high_9
NF13248_high_9
[»] chr3 (22 HSPs)
chr3 (1-160)||(25739560-25739718)
chr3 (1-34)||(15773182-15773215)
chr3 (1-34)||(42342523-42342556)
chr3 (1-32)||(12747887-12747918)
chr3 (1-31)||(8327897-8327927)
chr3 (4-34)||(39914242-39914272)
chr3 (1-35)||(43346639-43346673)
chr3 (4-34)||(53577354-53577384)
chr3 (1-34)||(1634450-1634483)
chr3 (1-34)||(3135596-3135629)
chr3 (1-34)||(15772844-15772877)
chr3 (1-34)||(22304083-22304116)
chr3 (1-34)||(29644716-29644749)
chr3 (1-34)||(29645037-29645070)
chr3 (1-34)||(31190007-31190040)
chr3 (1-34)||(32462694-32462727)
chr3 (1-34)||(32463036-32463069)
chr3 (1-34)||(43346926-43346959)
chr3 (1-34)||(45901703-45901736)
chr3 (1-34)||(52634666-52634699)
chr3 (3-32)||(54017953-54017982)
chr3 (1-29)||(39336364-39336392)
[»] chr7 (16 HSPs)
chr7 (1-35)||(30245483-30245517)
chr7 (1-34)||(1085751-1085784)
chr7 (1-34)||(7517570-7517603)
chr7 (1-34)||(7554015-7554048)
chr7 (1-34)||(30244691-30244724)
chr7 (1-36)||(118436-118471)
chr7 (1-31)||(8128576-8128606)
chr7 (1-35)||(24177424-24177458)
chr7 (4-34)||(40094912-40094942)
chr7 (1-34)||(30244260-30244293)
chr7 (1-34)||(30255329-30255362)
chr7 (1-34)||(36622950-36622983)
chr7 (1-34)||(41910729-41910762)
chr7 (5-34)||(43241485-43241514)
chr7 (1-33)||(36939868-36939900)
chr7 (3-31)||(40094531-40094559)
[»] chr4 (20 HSPs)
chr4 (3-37)||(36608796-36608830)
chr4 (1-34)||(3341118-3341151)
chr4 (1-34)||(52884877-52884910)
chr4 (1-31)||(2740693-2740723)
chr4 (4-34)||(4955453-4955483)
chr4 (4-34)||(25483326-25483356)
chr4 (1-31)||(52884688-52884718)
chr4 (1-34)||(1731780-1731813)
chr4 (3-32)||(3700357-3700386)
chr4 (1-34)||(10245910-10245943)
chr4 (1-34)||(22028094-22028127)
chr4 (1-34)||(22183397-22183430)
chr4 (5-34)||(23817783-23817812)
chr4 (1-34)||(34646782-34646815)
chr4 (1-34)||(36572009-36572042)
chr4 (1-34)||(39404388-39404421)
chr4 (1-38)||(41707597-41707634)
chr4 (1-30)||(44620654-44620683)
chr4 (5-34)||(49076585-49076614)
chr4 (4-32)||(45050593-45050621)
[»] chr1 (16 HSPs)
chr1 (1-35)||(37850735-37850769)
chr1 (1-34)||(35154174-35154207)
chr1 (1-32)||(41157367-41157398)
chr1 (1-31)||(19283590-19283620)
chr1 (1-31)||(22077257-22077287)
chr1 (1-31)||(24600449-24600479)
chr1 (4-34)||(34364497-34364527)
chr1 (4-34)||(34364915-34364945)
chr1 (4-34)||(41184563-41184593)
chr1 (1-31)||(44685449-44685479)
chr1 (1-34)||(21378176-21378209)
chr1 (1-34)||(26661657-26661690)
chr1 (1-34)||(37556101-37556134)
chr1 (1-34)||(41142362-41142395)
chr1 (1-34)||(41156981-41157014)
chr1 (3-31)||(50469218-50469246)
[»] chr8 (11 HSPs)
chr8 (1-34)||(147819-147852)
chr8 (1-34)||(9309345-9309378)
chr8 (1-31)||(4154801-4154831)
chr8 (3-33)||(5915863-5915893)
chr8 (1-31)||(9608738-9608768)
chr8 (1-31)||(41972151-41972181)
chr8 (1-34)||(3038425-3038458)
chr8 (1-34)||(8918899-8918932)
chr8 (1-34)||(34834866-34834899)
chr8 (1-34)||(45122996-45123029)
chr8 (3-31)||(9308970-9308998)
[»] chr6 (5 HSPs)
chr6 (1-34)||(2580007-2580040)
chr6 (1-32)||(6071124-6071155)
chr6 (1-32)||(7588359-7588390)
chr6 (1-34)||(2578577-2578610)
chr6 (3-32)||(8481919-8481948)
[»] chr5 (14 HSPs)
chr5 (1-34)||(12662787-12662820)
chr5 (1-34)||(15370089-15370122)
chr5 (1-34)||(35150737-35150770)
chr5 (1-34)||(35151028-35151061)
chr5 (1-36)||(40296450-40296485)
chr5 (1-31)||(13415895-13415925)
chr5 (1-31)||(36568702-36568732)
chr5 (1-34)||(299479-299512)
chr5 (1-34)||(6224186-6224219)
chr5 (1-34)||(26074917-26074950)
chr5 (1-34)||(36492352-36492385)
chr5 (3-36)||(42405733-42405766)
chr5 (4-32)||(31509615-31509643)
chr5 (1-29)||(35150002-35150030)
[»] chr2 (14 HSPs)
chr2 (1-34)||(3673075-3673108)
chr2 (1-34)||(31468881-31468914)
chr2 (1-34)||(36785698-36785731)
chr2 (1-34)||(38796353-38796386)
chr2 (1-34)||(38796755-38796788)
chr2 (1-31)||(16590881-16590911)
chr2 (1-31)||(28531449-28531479)
chr2 (1-31)||(33954396-33954426)
chr2 (1-34)||(3672709-3672742)
chr2 (1-34)||(16542439-16542472)
chr2 (1-34)||(29676893-29676926)
chr2 (1-34)||(36006014-36006047)
chr2 (1-29)||(35580858-35580886)
chr2 (3-31)||(37632734-37632762)
[»] scaffold0734 (2 HSPs)
scaffold0734 (3-34)||(5386-5417)
scaffold0734 (4-34)||(5767-5797)
[»] scaffold0171 (1 HSPs)
scaffold0171 (4-34)||(17594-17624)
[»] scaffold0391 (2 HSPs)
scaffold0391 (1-34)||(1241-1274)
scaffold0391 (1-34)||(3120-3153)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 25739560 - 25739718
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacagagtaatctataaatacatttatatcagtgttctctaatcctcaagttttgttctcgctcgcaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25739560 tgggacatataactcacacttgcacacaacaacagagtaatctataaatacatttatatcagtgttctctaatcctcaagttttgttctcgctcgcgata 25739659  T
Q  101 cggaacctcgagattcaaatcatgtatagcaagtatttttgttattcacattataagttc 160  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25739660 c-gaacctcgagattcaaatcatgtatagcaagtatttttgttattcacattataagttc 25739718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15773215 - 15773182
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  15773215 tgggacatataactcacacttgcacacaacaaca 15773182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42342523 - 42342556
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  42342523 tgggacatataactcacacttgcacacaacaaca 42342556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12747887 - 12747918
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  12747887 tgggacatataactcacacttgcacacaacaa 12747918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8327927 - 8327897
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  8327927 tgggacatataactcacacttgcacacaaca 8327897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 39914272 - 39914242
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  39914272 gacatataactcacacttgcacacaacaaca 39914242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43346673 - 43346639
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacag 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  43346673 tgggacatacaactcacacttgcacacaacaacag 43346639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 53577384 - 53577354
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  53577384 gacatataactcacacttgcacacaacaaca 53577354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1634450 - 1634483
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||| |||||    
T  1634450 tgggacatataactcacacttgcacacagcaaca 1634483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3135596 - 3135629
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  3135596 tgggacatataactcacacttgtacacaacaaca 3135629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15772877 - 15772844
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  15772877 tgggacatataactcacacttgcacacgacaaca 15772844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22304083 - 22304116
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  22304083 tgggacatataactcacacttgtacacaacaaca 22304116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29644716 - 29644749
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  29644716 tgggacatataactcacacttgcacacaaaaaca 29644749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29645037 - 29645070
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||| |||||||||||||||||||    
T  29645037 tgggacatataacttacacttgcacacaacaaca 29645070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31190040 - 31190007
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||| |||||||||||||||||||||||    
T  31190040 tgggacatatcactcacacttgcacacaacaaca 31190007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32462694 - 32462727
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  32462694 tgggacatataactcacacttgtacacaacaaca 32462727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32463036 - 32463069
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  32463036 tgggacatataactcacacttgtacacaacaaca 32463069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43346926 - 43346959
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  43346926 tgggacatataactcacacttgtacacaacaaca 43346959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45901736 - 45901703
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  45901736 tgggacatataactcacacttgtacacaacaaca 45901703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52634699 - 52634666
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  52634699 tgggacatataactcacacttgtacacaacaaca 52634666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 54017953 - 54017982
Alignment:
Q  3 ggacatataactcacacttgcacacaacaa 32  Q
    ||||||||||||||||||||||||||||||    
T  54017953 ggacatataactcacacttgcacacaacaa 54017982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39336364 - 39336392
Alignment:
Q  1 tgggacatataactcacacttgcacacaa 29  Q
    |||||||||||||||||||||||||||||    
T  39336364 tgggacatataactcacacttgcacacaa 39336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30245517 - 30245483
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacag 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30245517 tgggacatataactcacacttgcacacaacaacag 30245483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1085751 - 1085784
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  1085751 tgggacatataactcacacttgcacacaacaaca 1085784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7517603 - 7517570
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  7517603 tgggacatataactcacacttgcacacaacaaca 7517570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7554048 - 7554015
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  7554048 tgggacatataactcacacttgcacacaacaaca 7554015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30244724 - 30244691
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30244724 tgggacatataactcacacttgcacacaacaaca 30244691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 118436 - 118471
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacaga 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  118436 tgggacatataacttacacttgcacacaacaacaga 118471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8128576 - 8128606
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  8128576 tgggacatataactcacacttgcacacaaca 8128606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24177458 - 24177424
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacag 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  24177458 tgggacatataactcatacttgcacacaacaacag 24177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 40094912 - 40094942
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  40094912 gacatataactcacacttgcacacaacaaca 40094942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30244293 - 30244260
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  30244293 tgggacatataactcacacttgtacacaacaaca 30244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30255362 - 30255329
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  30255362 tgggacatataacgcacacttgcacacaacaaca 30255329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36622983 - 36622950
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  36622983 tgggacatataactcacacttgcacacaataaca 36622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41910729 - 41910762
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  41910729 tgggacatataactcacacttacacacaacaaca 41910762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 43241514 - 43241485
Alignment:
Q  5 acatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||    
T  43241514 acatataactcacacttgcacacaacaaca 43241485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36939868 - 36939900
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaac 33  Q
    |||||||||||||||||||||||||| ||||||    
T  36939868 tgggacatataactcacacttgcacagaacaac 36939900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 40094531 - 40094559
Alignment:
Q  3 ggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||    
T  40094531 ggacatataactcacacttgcacacaaca 40094559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 36608796 - 36608830
Alignment:
Q  3 ggacatataactcacacttgcacacaacaacagag 37  Q
    |||||||||||||||||||||||||||||||||||    
T  36608796 ggacatataactcacacttgcacacaacaacagag 36608830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3341151 - 3341118
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3341151 tgggacatataactcacacttgcacacaacaaca 3341118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52884910 - 52884877
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  52884910 tgggacatataactcacacttgcacacaacaaca 52884877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 2740723 - 2740693
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  2740723 tgggacatataactcacacttgcacacaaca 2740693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 4955453 - 4955483
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  4955453 gacatataactcacacttgcacacaacaaca 4955483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 25483356 - 25483326
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  25483356 gacatataactcacacttgcacacaacaaca 25483326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 52884718 - 52884688
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  52884718 tgggacatataactcacacttgcacacaaca 52884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1731780 - 1731813
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||| |||||||||||||||    
T  1731780 tgggacatataactcacatttgcacacaacaaca 1731813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 3700386 - 3700357
Alignment:
Q  3 ggacatataactcacacttgcacacaacaa 32  Q
    ||||||||||||||||||||||||||||||    
T  3700386 ggacatataactcacacttgcacacaacaa 3700357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10245943 - 10245910
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||| |||||||||||||||||||||||||||||    
T  10245943 tggggcatataactcacacttgcacacaacaaca 10245910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22028094 - 22028127
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||| |||||||||||||||||||||    
T  22028094 tgggacatataagtcacacttgcacacaacaaca 22028127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22183397 - 22183430
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  22183397 tgggatatataactcacacttgcacacaacaaca 22183430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 23817783 - 23817812
Alignment:
Q  5 acatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||    
T  23817783 acatataactcacacttgcacacaacaaca 23817812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34646782 - 34646815
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  34646782 tgggacatataactcacacttgtacacaacaaca 34646815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36572042 - 36572009
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  36572042 tgggacatataactcacacttgtacacaacaaca 36572009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39404421 - 39404388
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  39404421 tgggacatataactcacacttgtacacaacaaca 39404388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41707597 - 41707634
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacagagt 38  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  41707597 tgggacatataactcacacttgtacacaacaatagagt 41707634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 44620683 - 44620654
Alignment:
Q  1 tgggacatataactcacacttgcacacaac 30  Q
    ||||||||||||||||||||||||||||||    
T  44620683 tgggacatataactcacacttgcacacaac 44620654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 49076585 - 49076614
Alignment:
Q  5 acatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||    
T  49076585 acatataactcacacttgcacacaacaaca 49076614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 45050621 - 45050593
Alignment:
Q  4 gacatataactcacacttgcacacaacaa 32  Q
    |||||||||||||||||||||||||||||    
T  45050621 gacatataactcacacttgcacacaacaa 45050593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37850735 - 37850769
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacag 35  Q
    |||||||||||||||||||||||||||||||||||    
T  37850735 tgggacatataactcacacttgcacacaacaacag 37850769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35154174 - 35154207
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35154174 tgggacatataactcacacttgcacacaacaaca 35154207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41157398 - 41157367
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  41157398 tgggacatataactcacacttgcacacaacaa 41157367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 19283590 - 19283620
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  19283590 tgggacatataactcacacttgcacacaaca 19283620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 22077257 - 22077287
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  22077257 tgggacatataactcacacttgcacacaaca 22077287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 24600449 - 24600479
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  24600449 tgggacatataactcacacttgcacacaaca 24600479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 34364527 - 34364497
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  34364527 gacatataactcacacttgcacacaacaaca 34364497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 34364945 - 34364915
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  34364945 gacatataactcacacttgcacacaacaaca 34364915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 41184563 - 41184593
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  41184563 gacatataactcacacttgcacacaacaaca 41184593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 44685479 - 44685449
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  44685479 tgggacatataactcacacttgcacacaaca 44685449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21378176 - 21378209
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||| |||||||||||||||||||    
T  21378176 tgggacatataactgacacttgcacacaacaaca 21378209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26661657 - 26661690
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  26661657 tgggacatataactcacacttgtacacaacaaca 26661690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37556134 - 37556101
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  37556134 tgggacatataactcacacttgtacacaacaaca 37556101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41142395 - 41142362
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||| |||||||    
T  41142395 tgggacatataactcacacttgcacagaacaaca 41142362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41157014 - 41156981
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||| |||||||||||||||||||||    
T  41157014 tgggacatataattcacacttgcacacaacaaca 41156981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 50469218 - 50469246
Alignment:
Q  3 ggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||    
T  50469218 ggacatataactcacacttgcacacaaca 50469246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 147852 - 147819
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  147852 tgggacatataactcacacttgcacacaacaaca 147819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9309378 - 9309345
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9309378 tgggacatataactcacacttgcacacaacaaca 9309345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 4154801 - 4154831
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  4154801 tgggacatataactcacacttgcacacaaca 4154831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 5915893 - 5915863
Alignment:
Q  3 ggacatataactcacacttgcacacaacaac 33  Q
    |||||||||||||||||||||||||||||||    
T  5915893 ggacatataactcacacttgcacacaacaac 5915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9608768 - 9608738
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  9608768 tgggacatataactcacacttgcacacaaca 9608738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 41972181 - 41972151
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  41972181 tgggacatataactcacacttgcacacaaca 41972151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3038425 - 3038458
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  3038425 tgggacatataactcacacttgtacacaacaaca 3038458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8918899 - 8918932
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||| |||||||||||||||||||||||||    
T  8918899 tgggacatgtaactcacacttgcacacaacaaca 8918932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34834899 - 34834866
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  34834899 tgggacatataactcacacttgtacacaacaaca 34834866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45123029 - 45122996
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||| |||||    
T  45123029 tgggacatataactcacacttgcacacagcaaca 45122996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 9308998 - 9308970
Alignment:
Q  3 ggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||    
T  9308998 ggacatataactcacacttgcacacaaca 9308970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2580007 - 2580040
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  2580007 tgggacatataactcacacttgcacacaacaaca 2580040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6071155 - 6071124
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  6071155 tgggacatataactcacacttgcacacaacaa 6071124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 7588359 - 7588390
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  7588359 tgggacatataactcacacttgcacacaacaa 7588390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2578577 - 2578610
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  2578577 tgggacatataactcacacttgtacacaacaaca 2578610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 8481948 - 8481919
Alignment:
Q  3 ggacatataactcacacttgcacacaacaa 32  Q
    ||||||||||||||||||||||||||||||    
T  8481948 ggacatataactcacacttgcacacaacaa 8481919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12662787 - 12662820
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12662787 tgggacatataactcacacttgcacacaacaaca 12662820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15370122 - 15370089
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  15370122 tgggacatataactcacacttgcacacaacaaca 15370089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35150770 - 35150737
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35150770 tgggacatataactcacacttgcacacaacaaca 35150737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35151061 - 35151028
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35151061 tgggacatataactcacacttgcacacaacaaca 35151028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40296450 - 40296485
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaacaga 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  40296450 tgggacatataactcacacttgcacacaccaacaga 40296485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13415895 - 13415925
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  13415895 tgggacatataactcacacttgcacacaaca 13415925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36568702 - 36568732
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  36568702 tgggacatataactcacacttgcacacaaca 36568732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 299512 - 299479
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  299512 tgggacatataactcacacttgcgcacaacaaca 299479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6224219 - 6224186
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  6224219 tgggacatataactcacacttgtacacaacaaca 6224186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26074917 - 26074950
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  26074917 tgggacatataactcacacttgtacacaacaaca 26074950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36492352 - 36492385
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  36492352 tgggacatataactcacacttgcaaacaacaaca 36492385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 42405733 - 42405766
Alignment:
Q  3 ggacatataactcacacttgcacacaacaacaga 36  Q
    |||||||||||||||||||| |||||||||||||    
T  42405733 ggacatataactcacacttgtacacaacaacaga 42405766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 31509643 - 31509615
Alignment:
Q  4 gacatataactcacacttgcacacaacaa 32  Q
    |||||||||||||||||||||||||||||    
T  31509643 gacatataactcacacttgcacacaacaa 31509615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35150030 - 35150002
Alignment:
Q  1 tgggacatataactcacacttgcacacaa 29  Q
    |||||||||||||||||||||||||||||    
T  35150030 tgggacatataactcacacttgcacacaa 35150002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3673108 - 3673075
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3673108 tgggacatataactcacacttgcacacaacaaca 3673075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31468881 - 31468914
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31468881 tgggacatataactcacacttgcacacaacaaca 31468914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36785698 - 36785731
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  36785698 tgggacatataactcacacttgcacacaacaaca 36785731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38796353 - 38796386
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38796353 tgggacatataactcacacttgcacacaacaaca 38796386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38796755 - 38796788
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38796755 tgggacatataactcacacttgcacacaacaaca 38796788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 16590911 - 16590881
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  16590911 tgggacatataactcacacttgcacacaaca 16590881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 28531449 - 28531479
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  28531449 tgggacatataactcacacttgcacacaaca 28531479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33954396 - 33954426
Alignment:
Q  1 tgggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  33954396 tgggacatataactcacacttgcacacaaca 33954426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3672742 - 3672709
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||| |||||||||||||||||    
T  3672742 tgggacatataactcatacttgcacacaacaaca 3672709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16542472 - 16542439
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  16542472 tgggacttataactcacacttgcacacaacaaca 16542439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29676926 - 29676893
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  29676926 tgggacatataactcacacctgcacacaacaaca 29676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36006014 - 36006047
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  36006014 tgggacatataactcacacttgtacacaacaaca 36006047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35580858 - 35580886
Alignment:
Q  1 tgggacatataactcacacttgcacacaa 29  Q
    |||||||||||||||||||||||||||||    
T  35580858 tgggacatataactcacacttgcacacaa 35580886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 37632734 - 37632762
Alignment:
Q  3 ggacatataactcacacttgcacacaaca 31  Q
    |||||||||||||||||||||||||||||    
T  37632734 ggacatataactcacacttgcacacaaca 37632762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 5417 - 5386
Alignment:
Q  3 ggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||||||||||||||||    
T  5417 ggacatataactcacacttgcacacaacaaca 5386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 5797 - 5767
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  5797 gacatataactcacacttgcacacaacaaca 5767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 17594 - 17624
Alignment:
Q  4 gacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||||||||||||    
T  17594 gacatataactcacacttgcacacaacaaca 17624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1241 - 1274
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  1241 tgggacatataactcacacttgtacacaacaaca 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3120 - 3153
Alignment:
Q  1 tgggacatataactcacacttgcacacaacaaca 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  3120 tgggacatataactcacacctgcacacaacaaca 3153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University