View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13248_low_10 (Length: 263)

Name: NF13248_low_10
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13248_low_10
NF13248_low_10
[»] chr1 (6 HSPs)
chr1 (11-246)||(44088339-44088574)
chr1 (44-120)||(44050303-44050382)
chr1 (157-246)||(44068260-44068347)
chr1 (157-246)||(44080280-44080367)
chr1 (157-246)||(44088254-44088338)
chr1 (87-127)||(44089748-44089788)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 44088339 - 44088574
Alignment:
Q  11 ttatactttattctgcttaaatgaaaattttctcaatgctagctatcgcaacttctcaaattcacacagtcgctactagatattaataaatttcttcatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088339 ttatactttattctgcttaaatgaaaattttctcaatgctagctatcgcaacttctcaaattcacacagtcgctactagatattaataaatttcttcatt 44088438  T
Q  111 tgatatttctatatattatgtttttcggttttgtttaacgcgatacattgctttttaataaagtgcttgttttcttattgatatggtttacgacatactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088439 tgatatttctatatattatgtttttcggttttgtttaacgcgatacattgctttttaataaagtgcttgttttcttattgatatggtttacgacatactt 44088538  T
Q  211 tattatattgtttctcttaatttaactatgcatagt 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  44088539 tattatattgtttctcttaatttaactatgcatagt 44088574  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 44050303 - 44050382
Alignment:
Q  44 caatgctagctatcgcaacttctcaaattcacacagtcgctactagatat---taataaatttcttcatttgatatttct 120  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||    
T  44050303 caatgctagctattgcaacttctcaaattcacacagtcaatactagatattagtaataaatttcttcatttgatatttct 44050382  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 44068260 - 44068347
Alignment:
Q  157 attgctttttaataaagtg-cttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagt 246  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||   |||||||||||||||| |||||||| ||||||||    
T  44068260 attgctttctaataaagtggcttgttttcttattgatattgtttacgacatact---ttatattgtttctctttatttaactgtgcatagt 44068347  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 44080280 - 44080367
Alignment:
Q  157 attgctttttaataaagtg-cttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagt 246  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||  |||||||||||   |||||||||||| |||||||||||||||||    
T  44080280 attgctttctaataaagtggcttgttttcttattgatattgtttagaacatactttat---attgtttctctttatttaactatgcatagt 44080367  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 44088254 - 44088338
Alignment:
Q  157 attgctttttaataaagtgc-ttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagt 246  Q
    |||||||| ||||||||||| |||||||||||||||||| | |||| ||||||||||      |||||||||| |||||||| ||||||||    
T  44088254 attgctttctaataaagtgcattgttttcttattgatattgcttactacatacttta------tgtttctcttgatttaactgtgcatagt 44088338  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 44089748 - 44089788
Alignment:
Q  87 tagatattaataaatttcttcatttgatatttctatatatt 127  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  44089748 tagatattaatgaatttcttcatttgatatttctgtatatt 44089788  T

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